View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17110_low_2 (Length: 438)
Name: NF17110_low_2
Description: NF17110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17110_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 88 - 422
Target Start/End: Original strand, 29580874 - 29581208
Alignment:
| Q |
88 |
caaagagatgcaaagaaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagca |
187 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29580874 |
caaaaagatgcaaagaaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagca |
29580973 |
T |
|
| Q |
188 |
tgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactagtctcctttccgtttttcaacaaaaccaaggactttcgaa |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29580974 |
tgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactaggctcctttccgtttttcaacaaaaccaaggactttcgaa |
29581073 |
T |
|
| Q |
288 |
ctgcttcgcgtgctagatctctatgtatctgtcaaaacaatttgttagaacacaagtgttgcaattgaaagttggaagactaaacaccaagtcccacata |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29581074 |
ctgcttcgcgtgctagatctctatgtatctgtcaaaacaaattgttagaacacaagtgttgcaattgaaagttggaagactaaacaccaagtcccacata |
29581173 |
T |
|
| Q |
388 |
ttggatagaagcataactagtgttagtgttgtgtg |
422 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
29581174 |
ttggatagaagcataactagtgttagtgttgtgtg |
29581208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 103 - 397
Target Start/End: Complemental strand, 29613084 - 29612790
Alignment:
| Q |
103 |
aaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagcatgagttccagcaaca |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29613084 |
aaaaggctaaccaattgtaatctggccactagatccatacttcgtaaatgtccatcctccacattgatagccgatatcattagcatgagttccagcaaca |
29612985 |
T |
|
| Q |
203 |
aggattctcttggcgttcttattcaatggtatgaaaggtttactagtctcctttccgtttttcaacaaaaccaaggactttcgaactgcttcgcgtgcta |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29612984 |
aggattctcttggcgttcttattcaatggtatgaaaggtttactaggctcctttccatttttcaacaaaaccaacgactttcgaactgcttcgcgtgcta |
29612885 |
T |
|
| Q |
303 |
gatctctatgtatctgtcaaaacaatttgttagaacacaagtgttgcaattgaaagttggaagactaaacaccaagtcccacatattggatagaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
29612884 |
gatctctatgtatctgtcaaaacaatttgttagaacacaagtgtggcaattgaaagttggaaaacaaaacaccaagtcccacatattggatagaa |
29612790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 29613175 - 29613143
Alignment:
| Q |
12 |
atgaactgatctcccaagattaatgaataattg |
44 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
29613175 |
atgaactgatctcccaagattattgaataattg |
29613143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 152 - 313
Target Start/End: Original strand, 25127338 - 25127499
Alignment:
| Q |
152 |
gtccatcctccacattgatagccgatatcattagcatgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactagtct |
251 |
Q |
| |
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||||| |||||||||||| | || | || || |||||||||||| | |||||| |||||||| || ||||| |||||||| | ||||||| |||| | | |
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| T |
25127338 |
gtccaacctccacattgaaatccaagattatcagcatgagttccggtaacaagaattctcttagcattcttgttcaatggaagaaaaggttcactaatat |
25127437 |
T |
|
| Q |
252 |
cctttccgtttttcaacaaaaccaaggactttcgaactgcttcgcgtgctagatctctatgt |
313 |
Q |
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| T |
25127438 |
cttttccatttttcaacaaaaccaacgactttcgaactgcttcccgtgcaagatctctatgt |
25127499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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