View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17110_low_3 (Length: 367)
Name: NF17110_low_3
Description: NF17110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17110_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 54847678 - 54848043
Alignment:
| Q |
1 |
attgcatatatttttatt---catctgaaattagtagtctcttgaatgattgagagtaagtgtagacaaggatgcggtgataacatacaactcttttacc |
97 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54847678 |
attgcatatatttttattattcatctgaaattagtagtctcttgaatgattgagagaaagtgtagacaaggatgcggtgataacatacaactcttttacc |
54847777 |
T |
|
| Q |
98 |
----------------atatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacggaatgtgcctctcataccataattttata |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54847778 |
tataaacaccattcccatatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacg-aatgtgcctctcataccataattttata |
54847876 |
T |
|
| Q |
182 |
tttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaacaattgtattttataattt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54847877 |
tttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaaca-tttttaacaattgtattttataattt |
54847975 |
T |
|
| Q |
282 |
ttctcttaagctgaacaaatggaacaagaaatcgaaaacatgatattcaacatgagttcacttggaac |
349 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54847976 |
ttctcttaagctgaacaaatggaagaagaaatcgaaaacatgatattcaacatgagttcacttggaac |
54848043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University