View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17110_low_5 (Length: 241)
Name: NF17110_low_5
Description: NF17110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17110_low_5 |
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| [»] scaffold0237 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 3347633 - 3347849
Alignment:
| Q |
21 |
agttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttaggtctgtctcgttcttaaatttctcttccttttgtagaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3347633 |
agttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttagatctgtctcgttcttaaatttctcttccttttgtagaa |
3347732 |
T |
|
| Q |
121 |
ctcgtttcaatctctacg-tttctctcatcttcaccgtttactctaatccataaaaattaatatttaagaaatttaattttttgacgtcaagcttccagc |
219 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
3347733 |
ctcgtttcaatctctacgttttctctcatcttcaccgtttactctaatccataaaaattaatatttgagaaatttaattttttgatgtcaagcttccagc |
3347832 |
T |
|
| Q |
220 |
aagttcttctctctgtg |
236 |
Q |
| |
|
|||||||||||| |||| |
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| T |
3347833 |
aagttcttctctttgtg |
3347849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 25652 - 25864
Alignment:
| Q |
18 |
gatagttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttaggtctgtctcgttcttaaatttctcttccttttgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25652 |
gatagttagataactcactttattccatctttgccctcacttccatctttttatctttttcttagatctgtctcgttcttaaatttctcttcctcttgta |
25751 |
T |
|
| Q |
118 |
gaactcgtttcaatctctacg-tttctctcatcttcaccgtttactctaatccataaaaattaatatttaagaaatttaattttttgacgtcaagcttcc |
216 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25752 |
taacccgtttcaatctctacgttttctctcatcttcattgtttactctagtccataaaaattaatatttgagaaatttaattttttgacgtcaagcttcc |
25851 |
T |
|
| Q |
217 |
agcaagttcttct |
229 |
Q |
| |
|
||||||||||||| |
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| T |
25852 |
agcaagttcttct |
25864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 29886099 - 29886311
Alignment:
| Q |
18 |
gatagttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttaggtctgtctcgttcttaaatttctcttccttttgta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
29886099 |
gatagttagataactcactttattccatctttgccctcacttccatctttttatctttttcttagatctgtctcgttcttaaatttctcttcctcttgta |
29886198 |
T |
|
| Q |
118 |
gaactcgtttcaatctctacg-tttctctcatcttcaccgtttactctaatccataaaaattaatatttaagaaatttaattttttgacgtcaagcttcc |
216 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29886199 |
taacccgtttcaatctctacgttttctctcatcttcattgtttactctagtccataaaaattaatatttgagaaatttaattttttgacgtcaagcttcc |
29886298 |
T |
|
| Q |
217 |
agcaagttcttct |
229 |
Q |
| |
|
||||||||||||| |
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|
| T |
29886299 |
agcaagttcttct |
29886311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 46830726 - 46830515
Alignment:
| Q |
19 |
atagttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttaggtctgtctcgttcttaaatttctcttccttttgtag |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| || ||| |
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| T |
46830726 |
atagttagataactcactttattccatttttgccctcacttccatctttttatctttttcttagatatgtctcgttcttaaatttctcttcctcttatag |
46830627 |
T |
|
| Q |
119 |
aactcgtttcaatctctacg-tttctctcatcttcaccgtttactctaatccataaaaattaatatttaagaaatttaattttttgacgtcaagcttcca |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
46830626 |
aactcgtttcaatctctacgttttctctcatcttcactgtttactctagtccataaaaattaatatttgagaaatttaattttttgacgtcaagcttcca |
46830527 |
T |
|
| Q |
218 |
gcaagttcttct |
229 |
Q |
| |
|
||||||| |||| |
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|
| T |
46830526 |
gcaagtttttct |
46830515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 42850898 - 42850687
Alignment:
| Q |
19 |
atagttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttaggtctgtctcgttcttaaatttctcttccttttgtag |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| || ||| |
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| T |
42850898 |
atagttagataactcactttattccatttttgcccccacttccatctttttatctttttcttagatatgtctcgttcttaaatttctcttcctcttatag |
42850799 |
T |
|
| Q |
119 |
aactcgtttcaatctctacg-tttctctcatcttcaccgtttactctaatccataaaaattaatatttaagaaatttaattttttgacgtcaagcttcca |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42850798 |
aactcgtttcaatctctacgttttctctcatcttcactgtttactctagtccataaaaattaatatttgagaaatttaattttttgacgtcaagcttcca |
42850699 |
T |
|
| Q |
218 |
gcaagttcttct |
229 |
Q |
| |
|
||||||| |||| |
|
|
| T |
42850698 |
gcaagtttttct |
42850687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 31933172 - 31933378
Alignment:
| Q |
19 |
atagttagataactcactttattccatctttgccctcacttccatctttttgtctttttcttaggtctgtctcgttcttaaatttctcttccttttgtag |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| || ||| |
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|
| T |
31933172 |
atagttagataactcactttattccatttttgccctcacttccatctttttatctttttcttagatatgtctcgttcttaaatttctcttcctcttatag |
31933271 |
T |
|
| Q |
119 |
aactcgtttcaatctctacg-tttctctcatcttcaccgtttactctaatccataaaaattaatatttaagaaatttaattttttgacgtcaagcttcca |
217 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31933272 |
aactcgtttcaacctctacgttttctctcatcttcactgtttactctagtccataaaaattaatatttgagaaatttaattttttgacgtcaagcttcca |
31933371 |
T |
|
| Q |
218 |
gcaagtt |
224 |
Q |
| |
|
||||||| |
|
|
| T |
31933372 |
gcaagtt |
31933378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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