View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17110_low_6 (Length: 225)
Name: NF17110_low_6
Description: NF17110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17110_low_6 |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 3887813 - 3887613
Alignment:
| Q |
18 |
acagagggagtataaacataaaaattcacttgattaaagatgctaaaacacaaccataacatgtttttcacgataaaaatgtaaaatcataataccctag |
117 |
Q |
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| T |
3887813 |
acagagggagtataaacataaaaattcacttgattaaagatgctaaaacataaccataacatgtttttcacgataaaaatgtaaaatcataataccctga |
3887714 |
T |
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| Q |
118 |
ctca------------tgatgagcttaaacaaaaacaagataaaaactagaaatggagtacaaagactcatgttacataccaaagggaaaactaaataca |
205 |
Q |
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| T |
3887713 |
cttaaaggtgtttagctcatgagcttaaacaaaaacaagataaaaactagaaatggagtacaaagactcatgttacataccaaagggaaaaataaataca |
3887614 |
T |
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| Q |
206 |
a |
206 |
Q |
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| T |
3887613 |
a |
3887613 |
T |
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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 27188 - 27235
Alignment:
| Q |
48 |
tgattaaagatgctaaaacacaaccataacatgtttttcacgataaaa |
95 |
Q |
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| T |
27188 |
tgattaaagatactaaaacacaaccaaaacatgtctttcaccataaaa |
27235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 40042 - 40092
Alignment:
| Q |
45 |
acttgattaaagatgctaaaacacaaccataacatgtttttcacgataaaa |
95 |
Q |
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| T |
40042 |
acttgattaaagatactaaaatacaaccaaaacatgtctttcaccataaaa |
40092 |
T |
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