View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17111_low_2 (Length: 256)
Name: NF17111_low_2
Description: NF17111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17111_low_2 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 186043 - 185892
Alignment:
| Q |
1 |
tgtctcagaactaattaatattcccctcttaaagagattttatgccgtaataaaattgattaaaattttattgtcacttattattgagactttgagaggg |
100 |
Q |
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| T |
186043 |
tgtctcagaactaattaatattcccctcttaaagagattttatgccgtaataaaattgattaaaattttattgtcacttattattgaga---------ga |
185953 |
T |
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| Q |
101 |
tactcacttttaatatttgacacgtctcaattattgaatacaaatgaatatgcaagaaaca |
161 |
Q |
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| T |
185952 |
tattcacttttaatatttgacatatctcaattattgaatacaaatgaatatgcaagaaaca |
185892 |
T |
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Target: scaffold0011; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 223849 - 223699
Alignment:
| Q |
1 |
tgtctcagaactaattaatattcccctcttaaagagattttatgccgtaataaaattgattaaaattttattgtcacttattattgagactttgagaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
223849 |
tgtctcagaactaattaatattcccctcttaaagagattttatgccgtaataaaattgattaaaattttattgtcacttattattgaga---------gg |
223759 |
T |
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| Q |
101 |
tactcacttttaatatttgacacgtctcaattattgaatacaaatgaatatgcaagaaaca |
161 |
Q |
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|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
223758 |
tactaac-tttaatatttgacacgtctcaattattgaatagaaatgaatatgcaagaaaca |
223699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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