View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17111_low_3 (Length: 222)
Name: NF17111_low_3
Description: NF17111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17111_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 4654684 - 4654481
Alignment:
| Q |
14 |
atcagtctcaagtgctgttttatggaaatttcccttcctactcaatgtataagataataataaataaagcaacttctacgtatcattcatattaatctat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |
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| T |
4654684 |
atcagtctcaagtgctgttttatggaaatttcccttcctactcaatgtataagataataataaataaagcaacttctacgtaccattcaaattgatctat |
4654585 |
T |
|
| Q |
114 |
tttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctattgttccctct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4654584 |
tttcttcacactcttctcacacagatatggcaaactccataaacaaaaacatttacacaaaaatgagcatactatctctctttttgctattgttccctct |
4654485 |
T |
|
| Q |
214 |
aatt |
217 |
Q |
| |
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|||| |
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|
| T |
4654484 |
aatt |
4654481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 4644889 - 4644680
Alignment:
| Q |
14 |
atcagtctcaagtgctgttttatggaaatttcccttcctac---tcaatgtataagat-----aataataaataaa-gcaacttctacgtatcattcata |
104 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | ||||||| | || ||||||||||||| |||||||||||||| |||||| | |
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| T |
4644889 |
atcagtctcaagtgttgttttatggaaatttcccttcctacctctaaatgtatcaaatctaataataataaataaatgcaacttctacgtaccattcaaa |
4644790 |
T |
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| Q |
105 |
ttaatctattttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctatt |
204 |
Q |
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||||| ||| |||||||| ||||||||||||| |||||||||| |||||||||||| || |||||||||| | |||||||| |||||| |||||||| | |
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| T |
4644789 |
ttaatgtatcttcttcactctcttctcacacaactatggcaaacaccataaacaaaaaaaattacacaaaaatcagcatactttctctcattttgctact |
4644690 |
T |
|
| Q |
205 |
gttccctcta |
214 |
Q |
| |
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|||||||||| |
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| T |
4644689 |
gttccctcta |
4644680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 4638051 - 4637845
Alignment:
| Q |
14 |
atcagtctcaagtgctgttttatggaaatttcccttcctac---tcaatgtat--aag---ataataataaataaa-gcaacttctacgtatcattcata |
104 |
Q |
| |
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|||| ||||||||| |||||||||| ||||||| ||||||| ||||||||| || ||||||||||||||| |||||||||||||| |||||| | |
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| T |
4638051 |
atcactctcaagtgttgttttatgggaatttcctttcctacctctcaatgtatctaatctaataataataaataaatgcaacttctacgtaccattcaaa |
4637952 |
T |
|
| Q |
105 |
ttaatctattttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctatt |
204 |
Q |
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||||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||| | |
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| T |
4637951 |
ttaatgtatcttcttcactctcttctcacacagctatggcaaactccataaacaaaaacatttacacaaaaatcagcatactatccctctttttgctact |
4637852 |
T |
|
| Q |
205 |
gttccct |
211 |
Q |
| |
|
|||||| |
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|
| T |
4637851 |
tttccct |
4637845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 4673793 - 4673694
Alignment:
| Q |
115 |
ttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctattgttccctcta |
214 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| | | | ||||| | ||| ||||||| |||||||||||| |
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| T |
4673793 |
ttcttcaccctcttctcacacagctatggcaaactccataaacaaaaaaaattacacaaaaatcaccctactaccgctcattttgctcttgttccctcta |
4673694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 4663719 - 4663681
Alignment:
| Q |
179 |
agcatactatctctctttttgctattgttccctctaatt |
217 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
4663719 |
agcatactatctctcattttgctattgttccctctaatt |
4663681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 4865015 - 4864926
Alignment:
| Q |
115 |
ttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctatt |
204 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||||||| | | ||||||| ||| | | | ||||||||||| |||| ||||| |
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|
| T |
4865015 |
ttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctatt |
4864926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 4673913 - 4673828
Alignment:
| Q |
14 |
atcagtctcaagtgctgttttatggaaatttcccttccta---ctcaatgtataagataataataaataaa-gcaacttctacgta |
95 |
Q |
| |
|
|||||||||||||| | |||||| |||| |||||||||| ||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
4673913 |
atcagtctcaagtgtttttttataaaaatctcccttcctacctctcaatgtatataataataataattaaaggcaacttctacgta |
4673828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 4696213 - 4696288
Alignment:
| Q |
139 |
tatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctattgttccctcta |
214 |
Q |
| |
|
|||||||||||||| |||||||| | || |||| ||| | | | | ||||||||| |||||||||||||||||||| |
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| T |
4696213 |
tatggcaaactccagaaacaaaaaatttcacactaaaatcatcctgctatctctcattttgctattgttccctcta |
4696288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 4711116 - 4711191
Alignment:
| Q |
139 |
tatggcaaactccataaacaaaacaatttacacaaaactgagcatactatctctctttttgctattgttccctcta |
214 |
Q |
| |
|
||||||||||||||||||| ||| | || |||| ||| | | | |||||||||||| |||||| |||||||||||| |
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| T |
4711116 |
tatggcaaactccataaacgaaaaatttcacactaaaattaccctactatctctctatttgctcttgttccctcta |
4711191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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