View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17112_high_18 (Length: 374)

Name: NF17112_high_18
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17112_high_18
NF17112_high_18
[»] chr8 (19 HSPs)
chr8 (18-355)||(30477664-30478004)
chr8 (203-355)||(26916814-26916966)
chr8 (180-354)||(6927987-6928157)
chr8 (215-355)||(13754781-13754920)
chr8 (172-355)||(18322966-18323149)
chr8 (231-355)||(21416761-21416885)
chr8 (241-352)||(17698239-17698350)
chr8 (241-352)||(15058061-15058172)
chr8 (256-355)||(3459453-3459552)
chr8 (241-353)||(13765014-13765125)
chr8 (257-318)||(23497133-23497194)
chr8 (280-353)||(24507482-24507555)
chr8 (220-306)||(23269306-23269392)
chr8 (142-355)||(5859838-5860051)
chr8 (264-351)||(17927681-17927768)
chr8 (231-355)||(24576527-24576651)
chr8 (257-320)||(17319602-17319665)
chr8 (253-286)||(22454199-22454232)
chr8 (294-351)||(24070879-24070936)
[»] chr2 (18 HSPs)
chr2 (66-353)||(12168998-12169285)
chr2 (165-355)||(3586386-3586576)
chr2 (140-355)||(45258005-45258220)
chr2 (261-355)||(36267521-36267615)
chr2 (139-335)||(19918918-19919114)
chr2 (180-355)||(12127556-12127731)
chr2 (244-355)||(24499812-24499923)
chr2 (302-355)||(18770337-18770390)
chr2 (262-355)||(45715018-45715111)
chr2 (255-355)||(15825177-15825277)
chr2 (260-354)||(20120371-20120465)
chr2 (258-355)||(23257805-23257901)
chr2 (253-317)||(29711077-29711141)
chr2 (255-317)||(15390553-15390615)
chr2 (257-355)||(18135894-18135992)
chr2 (262-331)||(10923140-10923209)
chr2 (280-353)||(27846512-27846585)
chr2 (255-291)||(24318999-24319035)
[»] chr4 (14 HSPs)
chr4 (82-355)||(47253300-47253575)
chr4 (172-355)||(12683808-12683991)
chr4 (180-329)||(2674467-2674616)
chr4 (165-351)||(19643729-19643914)
chr4 (234-355)||(19809724-19809844)
chr4 (181-355)||(29157125-29157299)
chr4 (258-306)||(50151775-50151823)
chr4 (255-306)||(3642974-3643025)
chr4 (231-355)||(5518563-5518687)
chr4 (259-355)||(15514533-15514629)
chr4 (256-355)||(15742122-15742221)
chr4 (265-318)||(40979049-40979102)
chr4 (255-295)||(17110780-17110820)
chr4 (255-295)||(18463883-18463923)
[»] chr1 (15 HSPs)
chr1 (75-356)||(34273109-34273391)
chr1 (181-355)||(22414798-22414972)
chr1 (172-335)||(16050437-16050600)
chr1 (255-355)||(26977763-26977863)
chr1 (258-355)||(52565603-52565700)
chr1 (257-356)||(16030417-16030516)
chr1 (242-355)||(5671793-5671906)
chr1 (253-354)||(12177410-12177511)
chr1 (255-355)||(33101475-33101575)
chr1 (255-336)||(12032221-12032301)
chr1 (229-331)||(2140891-2140992)
chr1 (258-308)||(8019018-8019068)
chr1 (257-355)||(23728790-23728888)
chr1 (294-335)||(5459716-5459757)
chr1 (235-335)||(1659737-1659837)
[»] chr6 (30 HSPs)
chr6 (148-355)||(18147329-18147536)
chr6 (230-355)||(20148340-20148463)
chr6 (230-355)||(22184365-22184488)
chr6 (215-355)||(30681015-30681155)
chr6 (256-355)||(19305487-19305586)
chr6 (272-353)||(4251029-4251110)
chr6 (180-351)||(11087529-11087700)
chr6 (173-354)||(15480227-15480408)
chr6 (183-352)||(17380123-17380292)
chr6 (173-356)||(689744-689926)
chr6 (177-340)||(31423728-31423890)
chr6 (253-353)||(16130993-16131093)
chr6 (231-355)||(22572068-22572191)
chr6 (213-351)||(3404789-3404926)
chr6 (255-355)||(33596884-33596984)
chr6 (261-356)||(10115659-10115754)
chr6 (256-353)||(34064220-34064317)
chr6 (256-333)||(34572963-34573040)
chr6 (254-327)||(14268482-14268556)
chr6 (258-355)||(31295506-31295603)
chr6 (264-332)||(12203615-12203683)
chr6 (255-335)||(19277044-19277124)
chr6 (255-355)||(9403195-9403295)
chr6 (259-306)||(27772537-27772584)
chr6 (257-355)||(9291990-9292087)
chr6 (253-355)||(19730557-19730659)
chr6 (259-354)||(34187323-34187413)
chr6 (294-335)||(14080526-14080567)
chr6 (259-355)||(9277273-9277368)
chr6 (260-308)||(22692162-22692210)
[»] chr5 (14 HSPs)
chr5 (192-355)||(26994511-26994674)
chr5 (262-355)||(22903116-22903209)
chr5 (229-349)||(20025312-20025431)
chr5 (175-354)||(27083127-27083304)
chr5 (172-334)||(32418371-32418533)
chr5 (253-355)||(25333758-25333860)
chr5 (266-353)||(34493542-34493625)
chr5 (255-355)||(24647311-24647411)
chr5 (138-207)||(26163789-26163858)
chr5 (255-335)||(25537448-25537528)
chr5 (261-356)||(8938934-8939028)
chr5 (255-292)||(21213329-21213366)
chr5 (258-355)||(22865784-22865881)
chr5 (172-204)||(25333910-25333942)
[»] chr3 (19 HSPs)
chr3 (165-355)||(17143627-17143817)
chr3 (129-334)||(9800927-9801131)
chr3 (136-336)||(2311683-2311883)
chr3 (181-355)||(30606951-30607125)
chr3 (180-355)||(28723666-28723842)
chr3 (229-351)||(16704429-16704551)
chr3 (147-355)||(8122774-8122982)
chr3 (242-350)||(28715442-28715551)
chr3 (260-355)||(21342260-21342355)
chr3 (262-355)||(20622429-20622524)
chr3 (173-320)||(6109542-6109686)
chr3 (256-355)||(431285-431384)
chr3 (302-354)||(12252012-12252064)
chr3 (255-354)||(14860067-14860166)
chr3 (277-355)||(17485614-17485692)
chr3 (302-355)||(1770848-1770901)
chr3 (255-292)||(20118945-20118982)
chr3 (231-292)||(20122723-20122784)
chr3 (287-355)||(13085073-13085141)
[»] chr7 (15 HSPs)
chr7 (139-316)||(43171888-43172065)
chr7 (176-355)||(5863210-5863389)
chr7 (229-356)||(29373468-29373595)
chr7 (182-355)||(39879410-39879584)
chr7 (166-355)||(26762790-26762979)
chr7 (172-355)||(9135247-9135429)
chr7 (255-355)||(13292091-13292191)
chr7 (260-332)||(16203768-16203840)
chr7 (286-355)||(9867938-9868007)
chr7 (260-329)||(16204340-16204409)
chr7 (264-355)||(7486568-7486659)
chr7 (255-354)||(16987060-16987159)
chr7 (255-355)||(12644808-12644909)
chr7 (294-355)||(21161264-21161325)
chr7 (255-355)||(10287564-10287664)
[»] scaffold0360 (1 HSPs)
scaffold0360 (183-355)||(13945-14117)
[»] scaffold0505 (1 HSPs)
scaffold0505 (182-355)||(7908-8081)
[»] scaffold0023 (1 HSPs)
scaffold0023 (182-355)||(95705-95878)
[»] scaffold0054 (1 HSPs)
scaffold0054 (230-355)||(68745-68868)
[»] scaffold0291 (2 HSPs)
scaffold0291 (231-355)||(8525-8645)
scaffold0291 (260-355)||(15403-15498)
[»] scaffold0140 (1 HSPs)
scaffold0140 (231-355)||(6321-6445)
[»] scaffold0002 (2 HSPs)
scaffold0002 (255-356)||(120979-121080)
scaffold0002 (257-351)||(379743-379837)
[»] scaffold0057 (1 HSPs)
scaffold0057 (256-336)||(73771-73851)
[»] scaffold0294 (1 HSPs)
scaffold0294 (255-355)||(210-311)
[»] scaffold0174 (2 HSPs)
scaffold0174 (255-301)||(24825-24871)
scaffold0174 (295-355)||(29286-29344)
[»] scaffold0074 (1 HSPs)
scaffold0074 (304-354)||(35277-35327)
[»] scaffold0380 (1 HSPs)
scaffold0380 (257-355)||(6830-6928)
[»] scaffold0205 (1 HSPs)
scaffold0205 (255-355)||(22909-23009)
[»] scaffold0101 (1 HSPs)
scaffold0101 (260-320)||(10704-10764)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 30478004 - 30477664
Alignment:
Q  18 atgtttgggttctctagacgtttgatcgaggattctggtatagaccggtcagaaaatcaatcttacgttgatacgtggtccaaatttacaccgtcttaag 117  Q
    |||||||||||||||||||||||  |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  30478004 atgtttgggttctctagacgtttattcgaggattctgttatggaccgatcagaaaatcaatcttacgttgatacgtggtctaaacttacaccgtcttaag 30477905  T
Q  118 gccccgcgctt--aggaatgcaccaactttaatgcaccacatcgcatacaagcact-cccccgcacgaggatcaccctacatgtgtcctctaattgttct 214  Q
    ||||||  | |  |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||    
T  30477904 gccccgttcctgaaggaacacaccaactttaatgcaccacatcgcatacaagcactgcccccgcacgaggttcaccctacatgtgtcctctaactattct 30477805  T
Q  215 taatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaaca 314  Q
    |||| |||||||  ||||| | ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  30477804 taatcacacgcaacaaaactcagaggcggttattctcgacgcacgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaaca 30477705  T
Q  315 ctttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  30477704 ctttctacacactctttctcagtttcgttactgacttgagc 30477664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 26916814 - 26916966
Alignment:
Q  203 tctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgattta 302  Q
    ||||||||| | |||| |||||| | |||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||  |||||| ||||| | |    
T  26916814 tctaattgtccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactca 26916913  T
Q  303 cttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||||| |||||||| ||||| || | ||||||||||||||    
T  26916914 cttttcacaacactttctacacactctctctcagttccattactgacttgagc 26916966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 6927987 - 6928157
Alignment:
Q  180 cgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattg 279  Q
    |||||||||| ||||| ||||||||| |  |||| |||| |||||| | |||||| |||| ||||||||||| | || ||||||    ||||||| |||     
T  6927987 cgaggatcactctacacgtgtcctcttaccgttcctaatcacacgctgcaaaacctggagacggttattctcaacgcacgccta----agggtgaaatta 6928082  T
Q  280 cttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
     |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| || | |||||||||||||    
T  6928083 attcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 6928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 13754920 - 13754781
Alignment:
Q  215 taatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaaca 314  Q
    |||| |||||| | |||| ||| || ||||||||||| ||||| ||||||||||| ||||| | |||||||||||||| || |||| ||||| |||||||    
T  13754920 taatcacacgccgcaaaatccgaagacggttattctc-atgcgtgcctatataagagtgacttagcttcaccctcaaggtaggattcactttacacaaca 13754822  T
Q  315 ctttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||| |||||||||||||| |||| ||||||||||||||    
T  13754821 ctttctacacactctttctcagtttcattactgacttgagc 13754781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 18323149 - 18322966
Alignment:
Q  172 cccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataaggg 271  Q
    |||||||||||||||||  |||| ||||||||||||   | | |||| |||||| |  |||||||||||| ||||||||| |  |  |||||||||||||    
T  18323149 cccccgcacgaggatcatgctacgtgtgtcctctaaccatccctaatcacacgccgcgaaacccggaggcagttattctcaactcttgcctatataaggg 18323050  T
Q  272 tgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||| |||||||| ||||||  ||||||| ||||||||||||| ||||| |||| ||||||||| ||   ||||||||||||||    
T  18323049 tgaccttgcttcatcctcaatgtatgattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagc 18322966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 21416885 - 21416761
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctt 330  Q
    ||||||||| ||||||| | | | |||| |||||| ||||||||  |||||||||||| ||| || |||| | ||||||||||||||||| |||||||||    
T  21416885 aacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaacactttctacacactctt 21416786  T
Q  331 tctcaatttcgttactgacttgagc 355  Q
    ||||| |||| ||||||||||||||    
T  21416785 tctcagtttcattactgacttgagc 21416761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 17698239 - 17698350
Alignment:
Q  241 cggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttc 340  Q
    ||||||| ||||| ||||||||||||| ||||| | |||||||||||||||  ||| ||| ||||||||||||||||||| |||||||||||||  || |    
T  17698239 cggttatgctcgacgcgcgcctatatatgggtggccttgcttcaccctcaaagtataattcacttttcacaacactttctacacactctttctcggttcc 17698338  T
Q  341 gttactgacttg 352  Q
     |||||||||||    
T  17698339 attactgacttg 17698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 15058172 - 15058061
Alignment:
Q  241 cggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttc 340  Q
    ||||||| ||| |||||| | |||||||| ||||| ||| |||||||||||| ||||||||| ||||||| ||||||||| |||| | ||||||||||||    
T  15058172 cggttatcctcaatgcgcacttatataagtgtgacgttgtttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttc 15058073  T
Q  341 gttactgacttg 352  Q
     ||||| |||||    
T  15058072 attactaacttg 15058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 3459453 - 3459552
Alignment:
Q  256 cgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcac-aacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||||||||||||||||||  |||||||||| ||||| || |||||||||||||| |||||||||| ||||||||| |||| || | |||||||||||||    
T  3459453 cgcgcctatataagggtgaacttgcttcacc-tcaaggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgag 3459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 13765125 - 13765014
Alignment:
Q  241 cggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttc 340  Q
    ||||||||||| | |||||| ||| |||||||||| | |||||||| |||||| || ||| ||||| ||||||||||||| |||||||||||||| ||||    
T  13765125 cggttattctc-acgcgcgcttatttaagggtgacttagcttcaccttcaagacattattcactttacacaacactttctacacactctttctcagtttc 13765027  T
Q  341 gttactgacttga 353  Q
     ||||| ||||||    
T  13765026 attactcacttga 13765014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 23497133 - 23497194
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacacttt 318  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||| ||| |||||||||||||    
T  23497133 gcgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 24507555 - 24507482
Alignment:
Q  280 cttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    ||||||||||||| ||||||| |||||||||||||||||||  ||||||||||||| || | ||| ||||||||    
T  24507555 cttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttga 24507482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 23269392 - 23269306
Alignment:
Q  220 acacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttt 306  Q
    |||||| | ||||| ||||| ||||||| ||| |  |||||||||||| |||||||||||||||||||||||| || |||| |||||    
T  23269392 acacgctgcaaaactcggagacggttatcctcaacacgcgcctatatatgggtgacattgcttcaccctcaaggtacgattcacttt 23269306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 355
Target Start/End: Complemental strand, 5860051 - 5859838
Alignment:
Q  142 ctttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggc 241  Q
    |||||| |||| ||||||||||  ||| |  |||||  |||||||||| ||||| ||||| | |||  || | |||| || ||| | |||| || |||||    
T  5860051 ctttaaagcacaacatcgcatatgagcgcgtccccgtgcgaggatcactctacacgtgtcatttaaccgtccctaatcactcgccgcaaaatccagaggc 5859952  T
Q  242 ggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcg 341  Q
    |||||||  | | ||||||||||||||||||||| ||||||||  |||||| || |||| |||| ||| |||||| ||  |||||| ||||| | || |     
T  5859951 ggttatttccaacgcgcgcctatataagggtgaccttgcttcaatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttcca 5859852  T
Q  342 ttactgacttgagc 355  Q
    ||| ||||||||||    
T  5859851 ttattgacttgagc 5859838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 17927681 - 17927768
Alignment:
Q  264 tataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgactt 351  Q
    |||||||||| |||||||||||||| ||| ||||||| || ||||| |||||||||| || ||||  ||||| || | ||||||||||    
T  17927681 tataagggtggcattgcttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgactt 17927768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 24576527 - 24576651
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctt 330  Q
    |||| ||||||||||||  || | ||| ||||||||||||||||  || ||||||||||||| ||    ||||||||||||||||||  | ||||||| |    
T  24576527 aacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtacacattacttttcacaacacttcttacacactcat 24576626  T
Q  331 tctcaatttcgttactgacttgagc 355  Q
    | | | || | ||||||||||||||    
T  24576627 ttttagttccattactgacttgagc 24576651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 17319602 - 17319665
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttct 320  Q
    |||||||||||| |||||  ||||||||||||| ||  |||||| |||||||||||| ||||||    
T  17319602 gcgcctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaactctttct 17319665  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 22454199 - 22454232
Alignment:
Q  253 atgcgcgcctatataagggtgacattgcttcacc 286  Q
    ||||||||||||||||||||||| ||||||||||    
T  22454199 atgcgcgcctatataagggtgactttgcttcacc 22454232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 24070936 - 24070879
Alignment:
Q  294 tatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgactt 351  Q
    ||||||| |||| |||||||||||||| |||||||||||| | || | ||||||||||    
T  24070936 tatgattcacttctcacaacactttctacacactctttcttagttccattactgactt 24070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 66 - 353
Target Start/End: Complemental strand, 12169285 - 12168998
Alignment:
Q  66 tcagaaaatcaatcttacgttgatacgtggtccaaatttacaccgtcttaaggccccgcgctt--aggaatgcaccaactttaatgcaccacatcgcata 163  Q
    |||||| | |||||||||||||| ||||   ||||| ||||||||  ||||||||||||||||  |||||  |||||||||||||||||||||| |||||    
T  12169285 tcagaagaccaatcttacgttgacacgtcacccaaacttacaccgcattaaggccccgcgcttgaaggaacacaccaactttaatgcaccacattgcata 12169186  T
Q  164 caagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgccta 263  Q
    ||||| |||||| || |||||||||||||||||||||||||     |||| || | |||||  |  |||||| ||||||||||||||| | |||||||||    
T  12169185 caagcgctcccctgcgcgaggatcaccctacatgtgtcctcgcc--gttcctagtcacacgttgcgaaacccagaggcggttattctcaacgcgcgccta 12169088  T
Q  264 tataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    | |||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||| | || | ||||||||||||    
T  12169087 tttaagggtggcattgcttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccattactgacttga 12168998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 355
Target Start/End: Complemental strand, 3586576 - 3586386
Alignment:
Q  165 aagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctat 264  Q
    |||||| || |||||||||||||| ||||||||||||||||||  || | || | |||||| | | ||||  || ||||||||   | | ||||||||||    
T  3586576 aagcacacctccgcacgaggatcatcctacatgtgtcctctaaccgtccctattcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctat 3586477  T
Q  265 ataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||||||||||||||| | |||| ||||||| || | ||||||||||||||    
T  3586476 ataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttgagc 3586386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 355
Target Start/End: Original strand, 45258005 - 45258220
Alignment:
Q  140 aactttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttct-taatgacacgcaggaaaacccgga 238  Q
    ||||||| |||||| |||| ||| ||||||| || |||  ||||||||||||| ||||||||||||||  | ||  |||| |||||| | ||||| ||||    
T  45258005 aactttagtgcaccgcatcacatccaagcacgcctccgtgcgaggatcaccctgcatgtgtcctctaaccgctccctaatcacacgccgcaaaactcgga 45258104  T
Q  239 ggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatt 338  Q
    | |||||||  || | | |  |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||  |||| ||||||| | ||    
T  45258105 gacggttatcgtc-acgaggacctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtt 45258203  T
Q  339 tcgttactgacttgagc 355  Q
    || ||||| ||||||||    
T  45258204 tcattacttacttgagc 45258220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 36267615 - 36267521
Alignment:
Q  261 ctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||| |||| ||||||||||||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagc 36267521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 139 - 335
Target Start/End: Original strand, 19918918 - 19919114
Alignment:
Q  139 caactttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccgga 238  Q
    ||||||||||| || ||||| ||||| || || || | || | |||||||| ||| | || ||||||||  ||||||||| |||||| | |||| |  ||    
T  19918918 caactttaatgtacgacatcacatacgagtacgccactgcgcaaggatcacgctaaacgtatcctctaacagttcttaatcacacgccgcaaaatcgaga 19919017  T
Q  239 ggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctca 335  Q
    |||| ||||||||   | ||||||||||||| |||| ||||||||| ||||||| ||||||| ||||||||||||||||||| || |||||||||||    
T  19919018 ggcgattattctcacagtgcgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctca 19919114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 355
Target Start/End: Original strand, 12127556 - 12127731
Alignment:
Q  180 cgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattg 279  Q
    |||||||||| ||||| |||| ||||||  || | |||| ||||||   ||||| || |||||| ||||||| | ||| || ||||||||| ||||||||    
T  12127556 cgaggatcactctacacgtgttctctaaccgtccctaatcacacgctacaaaactcgaaggcggatattctcaaagcgtgcatatataaggttgacattg 12127655  T
Q  280 cttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||  |||  ||||||| ||||||||||||||||||| ||||| | |||| | |||| ||||||||||||||    
T  12127656 cttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagc 12127731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 24499923 - 24499812
Alignment:
Q  244 ttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgtt 343  Q
    |||||||| | || ||||| |||||||||||  |||||||||||| ||| ||||||| ||||||||||||| ||||| |||||||||||||| || | ||    
T  24499923 ttattctcaacgcacgcctttataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccatt 24499824  T
Q  344 actgacttgagc 355  Q
    ||||||||||||    
T  24499823 actgacttgagc 24499812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 18770390 - 18770337
Alignment:
Q  302 acttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  18770390 acttttcacaacactttctacacactctttctcaatttcattactgacttgagc 18770337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 45715111 - 45715018
Alignment:
Q  262 tatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||| ||||||||| | |||||||| ||||| ||||||| | ||||||| ||||||| | |||||||||||||| |||| ||||||||||||||    
T  45715111 tatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagc 45715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 15825277 - 15825177
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||| ||||||||  |||||||||||||||| ||    | ||||||||||||||||||| |||||||||||||| || | |||| ||||||||    
T  15825277 gcgcgcctatacaagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgacttgag 15825178  T
Q  355 c 355  Q
    |    
T  15825177 c 15825177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 20120465 - 20120371
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||| ||   ||| || ||||||||| ||||||| |||| ||||| |||||||  |||||||||||||| |||| |||||||||||||    
T  20120465 cctatataaggatggacttgttttaccctcaaggtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgag 20120371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 23257901 - 23257805
Alignment:
Q  258 cgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||||| ||| |||||||||||| ||  ||| ||||||| | ||||||||| ||||||| || ||| || | | ||||||||||||    
T  23257901 cgcctatataagggtgaccttgattcaccctcaaggtacaattcacttttc-ccacactttctacacactccttgtcatttccttcactgacttgagc 23257805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 29711141 - 29711077
Alignment:
Q  253 atgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactt 317  Q
    ||||||||||||||||||||||  |||||||||||||||| ||    | ||||||||||||||||    
T  29711141 atgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 29711077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 15390553 - 15390615
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactt 317  Q
    ||||||||||||||||||||  |||||||||||||||| ||    | ||||||||||||||||    
T  15390553 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 15390615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 18135992 - 18135894
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||||||||  |||||||||| || || |||   | |||||| |||||||||  | |||||||||||||| || | ||||| ||||||||    
T  18135992 gcgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagc 18135894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 10923140 - 10923209
Alignment:
Q  262 tatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactcttt 331  Q
    |||||||||||||  ||||||||||||||||  |   || |||||||||| |||||||| ||||||||||    
T  10923140 tatataagggtgaacttgcttcaccctcaaggcacacttcacttttcacagcactttctacacactcttt 10923209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 27846512 - 27846585
Alignment:
Q  280 cttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    ||||||||||||| ||  ||| ||||| ||||||||||||| || ||| ||||||| || | ||||||||||||    
T  27846512 cttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttga 27846585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 24319035 - 24318999
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaa 291  Q
    ||||||||||||||||||||  |||||||||||||||    
T  24319035 gcgcgcctatataagggtgaacttgcttcaccctcaa 24318999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 355
Target Start/End: Complemental strand, 47253575 - 47253300
Alignment:
Q  82 acgttgatacgtggtccaaatttacaccgtcttaaggccccgcgctt--aggaatgcaccaactttaatgcaccacatcgcatacaagcactcccccgca 179  Q
    ||||||| |||||||||||| || ||||| |||||||| |||||  |  |||||  || |||| ||  ||||||||||| ||| |||| || || ||||     
T  47253575 acgttgacacgtggtccaaacttgcaccgccttaaggctccgcgtctgaaggaacacatcaacgttggtgcaccacatcacatccaagtacgcctccgcg 47253476  T
Q  180 cgaggatcaccctacatgtgtcctctaattgttct-taatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacatt 278  Q
    |||||||||| |||||||||||||||||||| ||| |||| |||| | | ||||||||||| | |||||| || ||||||||||||||||||||||| |     
T  47253475 cgaggatcactctacatgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatc-atgcgcgcctatataagggtgactta 47253377  T
Q  279 gcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||| || | ||||||||||||||    
T  47253376 gcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagc 47253300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 12683991 - 12683808
Alignment:
Q  172 cccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataaggg 271  Q
    |||||||  |||||||||| |||||||||||||||  ||| | |||| | |||  | | ||| ||||| ||||||| ||  ||||||||||| |||||||    
T  12683991 cccccgcgtgaggatcaccttacatgtgtcctctagctgtccgtaatcatacgtcgcataactcggagacggttatgcttaatgcgcgcctagataaggg 12683892  T
Q  272 tgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||  |||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||    
T  12683891 tgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagc 12683808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 2674467 - 2674616
Alignment:
Q  180 cgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattg 279  Q
    |||||||||||||||| ||||||||||| ||| | |||| |||||| | |||| |||||| ||||||| ||| | |||||| |||||||||||||  ||     
T  2674467 cgaggatcaccctacacgtgtcctctaactgtccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaactta 2674566  T
Q  280 cttcaccctcaagatatgatttacttttcacaacactttctgcacactct 329  Q
    ||||| ||||||| ||||||| ||||||||||||||||||| ||||||||    
T  2674567 cttcatcctcaaggtatgattcacttttcacaacactttctacacactct 2674616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 351
Target Start/End: Complemental strand, 19643914 - 19643729
Alignment:
Q  165 aagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctat 264  Q
    |||||| ||||||| ||||||||||| || ||||||||||||   || | ||||  ||||| | | ||| | ||| ||||||| ||| | || |||||||    
T  19643914 aagcacgcccccgcgcgaggatcaccttatatgtgtcctctacc-gtccctaatctcacgccgcataactcagagacggttatcctcaacgcacgcctat 19643816  T
Q  265 ataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgactt 351  Q
    ||||||||||  ||| |||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||| || | ||||||||||    
T  19643815 ataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttccattactgactt 19643729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 355
Target Start/End: Complemental strand, 19809844 - 19809724
Alignment:
Q  234 ccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttct 333  Q
    |||||| | ||||||||| | |||||||||| |||||||||| | | |||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||    
T  19809844 ccggagacagttattctc-acgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacacactctttct 19809746  T
Q  334 caatttcgttactgacttgagc 355  Q
     | |||| ||||||||||||||    
T  19809745 tagtttcattactgacttgagc 19809724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 355
Target Start/End: Complemental strand, 29157299 - 29157125
Alignment:
Q  181 gaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgc 280  Q
    |||||||| ||||||||||||||||||  || | |||| |   || | | ||||| ||| ||||||| ||| | ||||||||||||||||||||  || |    
T  29157299 gaggatcatcctacatgtgtcctctaaccgtccctaatcattagccgcataacccagagacggttatcctctacgcgcgcctatataagggtgaacttac 29157200  T
Q  281 ttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||| ||||| |||| || ||||| |||||||||| || |||||| ||||||| || | ||||| ||||||||    
T  29157199 ttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcagttccattactaacttgagc 29157125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 50151775 - 50151823
Alignment:
Q  258 cgcctatataagggtgacattgcttcaccctcaagatatgatttacttt 306  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 3642974 - 3643025
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttt 306  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||| |||||    
T  3642974 gcgcgcctacataagggtgaccttgattcaccctcaagatatgattcacttt 3643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 5518687 - 5518563
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctt 330  Q
    ||||||||| ||||||| | | |  |||||||||||||||||||  |||||||||||||||| || |  | ||||| ||||||||||  | |||| |||     
T  5518687 aacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattctc 5518588  T
Q  331 tctcaatttcgttactgacttgagc 355  Q
    ||||| ||   ||||||||||||||    
T  5518587 tctcagttcaattactgacttgagc 5518563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 15514533 - 15514629
Alignment:
Q  259 gcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||||||  |||||||||||||||| ||    | ||||| ||||||||||  | |||||||||| ||| || | ||||||||||||||    
T  15514533 gcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagc 15514629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 15742122 - 15742221
Alignment:
Q  256 cgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||||||  ||||||||  |||||| ||    | ||||||||||||||||  | |||||| ||||||| || | ||||||||||||||    
T  15742122 cgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaacacttcttacacactttttctcagttccattactgacttgagc 15742221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 40979049 - 40979102
Alignment:
Q  265 ataagggtgacattgcttcaccctcaagatatgatttacttttcacaacacttt 318  Q
    ||||||||||| |  |||||||||||||||| |||| ||||||||| |||||||    
T  40979049 ataagggtgacttaacttcaccctcaagatacgattcacttttcaccacacttt 40979102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 17110820 - 17110780
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagata 295  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  17110820 gcgcgcctatgtaagggtgaacttgcttcaccctcaagata 17110780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 18463923 - 18463883
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagata 295  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  18463923 gcgcgcctatataaggatgaaattgtttcaccctcaagata 18463883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 75 - 356
Target Start/End: Complemental strand, 34273391 - 34273109
Alignment:
Q  75 caatcttacgttgatacgtggtccaaatttacaccgtcttaaggccccgcgctt--aggaatgcaccaactttaatgcaccacatcgcatacaagcactc 172  Q
    |||||| ||| ||| ||||| |||||| ||||| |  ||||||||||||||| |  || ||  | |||||||||||| |||||||||||||||||||||     
T  34273391 caatctcacgctgacacgtgatccaaacttacatcaccttaaggccccgcgcctgaagaaacacgccaactttaatgaaccacatcgcatacaagcacta 34273292  T
Q  173 ccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggt 272  Q
     |  || |||||||||  |||||  ||||||||||  |||| |||   ||||| | |||||| |||||||||||||| | | || | ||||||||||||     
T  34273291 tcatgcgcgaggatcatgctacacatgtcctctaaccgttcctaaccgcacgccgcaaaacctggaggcggttattcccaa-gcacacctatataagggc 34273193  T
Q  273 gacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagca 356  Q
    |||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||||||||||| || |||||||||||||||||    
T  34273192 gacattgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagca 34273109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 355
Target Start/End: Complemental strand, 22414972 - 22414798
Alignment:
Q  181 gaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgc 280  Q
    |||||||||| |||||||||| ||||| ||| | |||| | |||| | | ||| ||||| | ||||| ||||| ||  ||||||| |||| |||  ||||    
T  22414972 gaggatcaccttacatgtgtcatctaactgtccataatcatacgccgcataacacggagaccgttatgctcgacgcatgcctatacaaggatgaacttgc 22414873  T
Q  281 ttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||| |||| ||||||||||||||    
T  22414872 ttcaccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagc 22414798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 335
Target Start/End: Complemental strand, 16050600 - 16050437
Alignment:
Q  172 cccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataaggg 271  Q
    ||||| || ||||||||||||||| ||||||||||| |||  ||||| |||| | | |||| |||||     |||||| | |||||| ||||||||||||    
T  16050600 cccccacatgaggatcaccctacacgtgtcctctaactgtctttaatcacacaccgcaaaatccggaatgatttattcccaatgcgcacctatataaggg 16050501  T
Q  272 tgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctca 335  Q
    || |||||||||| ||||||| |||| || ||||||||| ||||||||| ||||||||||||||    
T  16050500 tggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctca 16050437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 26977863 - 26977763
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||| | ||||||||| ||||||| |||||||||||||  || | |||||||||||||    
T  26977863 gcgcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccattactgacttgag 26977764  T
Q  355 c 355  Q
    |    
T  26977763 c 26977763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 52565700 - 52565603
Alignment:
Q  258 cgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||| |||||||| |||  |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||| || | ||||||||||||||    
T  52565700 cgccaatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagc 52565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 356
Target Start/End: Complemental strand, 16030516 - 16030417
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagca 356  Q
    ||||||||||||||||| | | ||||| |||||||| ||||||| ||||||||||||||||||| |||||||||  ||| || | |||||||||||||||    
T  16030516 gcgcctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccattactgacttgagca 16030417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 355
Target Start/End: Complemental strand, 5671906 - 5671793
Alignment:
Q  242 ggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcg 341  Q
    ||||||| || ||||||| ||||||||| ||||| |  ||||||| ||||  ||||||| ||||||||||||||||||| |||||||||||||| || |     
T  5671906 ggttattttcaatgcgcgtctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttcca 5671807  T
Q  342 ttactgacttgagc 355  Q
    ||||| ||||||||    
T  5671806 ttactaacttgagc 5671793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 12177511 - 12177410
Alignment:
Q  253 atgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttg 352  Q
    |||||| ||||||||||| |||  |||||||  ||||||| ||| ||| ||||||||||||||||||| |||||||||||||| || | |||||||||||    
T  12177511 atgcgcacctatataaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactttctacacactctttctcagttccattactgacttg 12177412  T
Q  353 ag 354  Q
    ||    
T  12177411 ag 12177410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 33101475 - 33101575
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||| ||| |||| |||||||||| |||||||||||| || | || ||||||||||||||||||| |||||| ||||||| || | |||| ||||||||    
T  33101475 gcgcgtctacataaaggtgacattgtttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccattaccgacttgag 33101574  T
Q  355 c 355  Q
    |    
T  33101575 c 33101575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 12032221 - 12032301
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaa 336  Q
    ||||||||||||||||||||| | | |||||| ||||| ||||||| | ||| ||||||||||||| |||||||||||||||    
T  12032221 gcgcgcctatataagggtgacttagtttcacc-tcaagttatgattcattttacacaacactttctacacactctttctcaa 12032301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 2140891 - 2140992
Alignment:
Q  229 aaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactc 328  Q
    |||||||| | | |||||||||| | ||||| || |||||||||||| | |||||||||||||| |||| || ||||| ||||||||||||| |||| ||    
T  2140891 aaaacccgaaagtggttattctc-acgcgcgtctttataagggtgacttagcttcaccctcaaggtatggttcactttccacaacactttctacacattc 2140989  T
Q  329 ttt 331  Q
    |||    
T  2140990 ttt 2140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 8019068 - 8019018
Alignment:
Q  258 cgcctatataagggtgacattgcttcaccctcaagatatgatttacttttc 308  Q
    |||||||||||||||||||| ||||||||| |||| ||||||| |||||||    
T  8019068 cgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 23728790 - 23728888
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||||||||  ||| |||||||||||| ||    | ||||||||||||||||  | |||||||||||||| || | ||| ||||||||||    
T  23728790 gcgcctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagc 23728888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 5459716 - 5459757
Alignment:
Q  294 tatgatttacttttcacaacactttctgcacactctttctca 335  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  5459716 tatgattcactttacacaacactttctacacactctttctca 5459757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 1659737 - 1659837
Alignment:
Q  235 cggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctc 334  Q
    ||||| ||||||  ||||| || | |||||||||||||||  ||||| ||||| ||||||||   | ||||||||||||||||  | |||| ||||||||    
T  1659737 cggagacggttagactcgaggcacacctatataagggtgaacttgctccacccacaagatatttctcacttttcacaacacttcttacacattctttctc 1659836  T
Q  335 a 335  Q
    |    
T  1659837 a 1659837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 355
Target Start/End: Complemental strand, 18147536 - 18147329
Alignment:
Q  148 tgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttat 247  Q
    ||||||||| ||||||| ||||| ||| |   ||||||||||| ||||  ||||||||||  || | |||| |||||| | ||||||| ||||||||||     
T  18147536 tgcaccacaccgcatacgagcacaccctcatgcgaggatcaccttacacatgtcctctaaccgtccctaatcacacgctgcaaaacccagaggcggttaa 18147437  T
Q  248 tctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactg 347  Q
    || | |||||| ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| |||||||||||||  || | ||| ||    
T  18147436 tcccaatgcgcacctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtg 18147337  T
Q  348 acttgagc 355  Q
    ||||||||    
T  18147336 acttgagc 18147329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 230 - 355
Target Start/End: Complemental strand, 20148463 - 20148340
Alignment:
Q  230 aaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactct 329  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||  |||||||    
T  20148463 aaacccggaggcagttattctcaacgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactct 20148366  T
Q  330 ttctcaatttcgttactgacttgagc 355  Q
    ||||||||| | ||||| ||||||||    
T  20148365 ttctcaattccattactaacttgagc 20148340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 230 - 355
Target Start/End: Original strand, 22184365 - 22184488
Alignment:
Q  230 aaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactct 329  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||  |||||||    
T  22184365 aaacccggaggcagttattctcaacgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactct 22184462  T
Q  330 ttctcaatttcgttactgacttgagc 355  Q
    ||||||||| | ||||| ||||||||    
T  22184463 ttctcaattccattactaacttgagc 22184488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 30681155 - 30681015
Alignment:
Q  215 taatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaaca 314  Q
    |||| |||||| | ||||| ||||||||||||||||| | |||||||||| ||| ||||||||||||||| ||||||| ||||||| ||||||||||| |    
T  30681155 taatcacacgccgcaaaactcggaggcggttattctcaacgcgcgcctatctaaaggtgacattgcttcatcctcaaggtatgattcacttttcacaata 30681056  T
Q  315 ctttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    | |||| ||| |||||| ||| |||| ||||||||||||||    
T  30681055 cattctacacgctctttatcagtttcattactgacttgagc 30681015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 19305586 - 19305487
Alignment:
Q  256 cgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||| || | ||||||||||||||    
T  19305586 cgcgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagc 19305487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 4251029 - 4251110
Alignment:
Q  272 tgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||    
T  4251029 tgactttgcttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgacttga 4251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 351
Target Start/End: Complemental strand, 11087700 - 11087529
Alignment:
Q  180 cgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattg 279  Q
    |||||||||||||||| |||||||||||  || |||||| |||||| | | || |||||| | ||||| ||| | |||| |||||||||||||||  |||    
T  11087700 cgaggatcaccctacacgtgtcctctaaccgtccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaacttg 11087601  T
Q  280 cttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgactt 351  Q
     |||| ||||||| ||||||| ||||||||||||||  ||| || ||||||||||| || | ||||||||||    
T  11087600 tttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgactt 11087529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 354
Target Start/End: Original strand, 15480227 - 15480408
Alignment:
Q  173 ccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggt 272  Q
    |||||||| |||| ||| ||||| ||||| ||||||||| | |||| ||| || | |||| | ||| |||||||||  | |   || |||||||||||||    
T  15480227 ccccgcacaaggagcacgctacacgtgtcttctaattgtccctaatcacatgccgtaaaatctggatgcggttatttccaacatgcacctatataagggt 15480326  T
Q  273 gacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||| | ||||||| |||||| ||||||| ||||||||||||||||||| |||||| ||||||| |||| ||| |||||||||    
T  15480327 gacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgag 15480408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 17380292 - 17380123
Alignment:
Q  183 ggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgctt 282  Q
    |||||||| ||| ||| |||||||| ||||| |||| ||||||   ||||||  ||||||||||||| | | || |||||||||||||||||| |||| |    
T  17380292 ggatcaccttacttgtttcctctaactgttcctaatcacacgccataaaacctagaggcggttattcccaacgcacgcctatataagggtgaccttgcgt 17380193  T
Q  283 caccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttg 352  Q
    || ||| ||| || |||| ||||||||||||||||| | |||||||||||||| ||   |||||||||||    
T  17380192 caacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttctattactgacttg 17380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 356
Target Start/End: Original strand, 689744 - 689926
Alignment:
Q  173 ccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggt 272  Q
    |||||| |||||| |||||| || || |||||||| ||| |||||| |||||| | ||||| ||||| || ||||  || | | ||||||||||||||||    
T  689744 ccccgcgcgaggaccacccttcacgtatcctctaactgtccttaatcacacgccgcaaaactcggagacgattatgatcaacgtgcgcctatataagggt 689843  T
Q  273 gacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagca 356  Q
    ||| ||| | || ||||||| || |||| ||||||||||||||||| | ||||| |||||||| || | |||||||||||||||    
T  689844 gaccttgat-cagcctcaaggtacgattcacttttcacaacactttatacacacactttctcagttccattactgacttgagca 689926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 340
Target Start/End: Original strand, 31423728 - 31423890
Alignment:
Q  177 gcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgaca 276  Q
    ||||||||||||||||||||||||||||||||||| |   || |||||  | | ||||||||  |||| || | | |  ||||||||||||||||||       
T  31423728 gcacgaggatcaccctacatgtgtcctctaattgtccccgatcacacgtcgcataacccggacacggt-atgcccaacacgcgcctatataagggtgcac 31423826  T
Q  277 ttgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttc 340  Q
    ||||||||||||||||| |||||| |||| |||||||||||||| || ||||||||||| ||||    
T  31423827 ttgcttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtttc 31423890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 353
Target Start/End: Complemental strand, 16131093 - 16130993
Alignment:
Q  253 atgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttg 352  Q
    |||||||||||||||||||| |  ||| |||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||| || | |||||||||||    
T  16131093 atgcgcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgacttg 16130994  T
Q  353 a 353  Q
    |    
T  16130993 a 16130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 22572191 - 22572068
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctt 330  Q
    |||| |||| ||||||| ||| | ||||||| |||||| |||||  |||||||||||||||||||||||| ||||| |||||||| |||| |||||||||    
T  22572191 aacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctcaagatatgattcactttacacaacaccttctacacactctt 22572092  T
Q  331 tctcaatttcgttactgacttgagc 355  Q
    | |||||| | |||||||| |||||    
T  22572091 t-tcaattccattactgacatgagc 22572068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 351
Target Start/End: Original strand, 3404789 - 3404926
Alignment:
Q  213 cttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaa 312  Q
    |||||| |||||| | ||||||| ||| |||||||| || |  ||||||||||||||||| |  |  ||||||||||||| ||||||| | |||||||||    
T  3404789 cttaatcacacgctgcaaaacccagagacggttattttc-acacgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaa 3404887  T
Q  313 cactttctgcacactctttctcaatttcgttactgactt 351  Q
    |||||||| |||||||||||||| || | ||||||||||    
T  3404888 cactttctacacactctttctcagttccattactgactt 3404926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 33596984 - 33596884
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||| ||||  |||||||| ||||||| |||||||   ||||||||||||||||| |||||| ||||| | |||| ||||||| |||||    
T  33596984 gcgcgcctatataagagtgaacttgcttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgag 33596885  T
Q  355 c 355  Q
    |    
T  33596884 c 33596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 10115659 - 10115754
Alignment:
Q  261 ctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagca 356  Q
    |||||||||| |||| | ||||||||||| || ||||||| ||||||||||| ||||| | | | |||||||||| |||| |||||||||||||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgacttgagca 10115754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 34064317 - 34064220
Alignment:
Q  256 cgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    |||||||||||||||||||  |||||||||||||||| ||    | ||||||||||||||||  | |||||||||||| | |||| ||||||||||||    
T  34064317 cgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgacttga 34064220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 34572963 - 34573040
Alignment:
Q  256 cgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttct 333  Q
    |||||||||||||||||||| |  ||||||||||||  ||||||| ||||||||| ||||||||| |||||| |||||    
T  34572963 cgcgcctatataagggtgacttaacttcaccctcaatgtatgattcacttttcaccacactttctacacactttttct 34573040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 14268556 - 14268482
Alignment:
Q  254 tgcgcgcctatataagggtgacattgcttca-ccctcaagatatgatttacttttcacaacactttctgcacact 327  Q
    |||| ||||||||||||||||| | |||||| |||||| ||||||||| |||||||| |||||||||| ||||||    
T  14268556 tgcgtgcctatataagggtgacttagcttcacccctcacgatatgattcacttttcaaaacactttctacacact 14268482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 31295506 - 31295603
Alignment:
Q  258 cgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||| |||||||||  ||||||||||||| || ||    | ||||||||||||||||  | |||||||||||||| |||| ||||||||||||||    
T  31295506 cgcctatgtaagggtgaacttgcttcaccctcgaggtacatatcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagc 31295603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 12203615 - 12203683
Alignment:
Q  264 tataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttc 332  Q
    |||||||||||| |  ||||||||||||  ||||||| ||||||||||||||||||| || ||||||||    
T  12203615 tataagggtgacttaacttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 19277044 - 19277124
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctca 335  Q
    ||||||||||||||||||||  |||||||||||||||| ||    | ||||||||||||||||  | ||||||||||||||    
T  19277044 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctca 19277124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 9403295 - 9403195
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||| |||||||||||||||  |||||||||||||||| ||    | ||||| ||||||||||  | |||||||||||||| || | ||| |||||||||    
T  9403295 gcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttgag 9403196  T
Q  355 c 355  Q
    |    
T  9403195 c 9403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 27772537 - 27772584
Alignment:
Q  259 gcctatataagggtgacattgcttcaccctcaagatatgatttacttt 306  Q
    ||||||||||||||||| |||||||||| ||||| ||||||| |||||    
T  27772537 gcctatataagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 9291990 - 9292087
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||| |||||  | |||||||||||||| ||||||| ||||||| | ||||||| | || ||| ||||||| || |  |||||||||||||    
T  9291990 gcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc-ccacactttttacatactatttctcagttccaatactgacttgagc 9292087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 19730557 - 19730659
Alignment:
Q  253 atgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttg 352  Q
    |||||| |||||||||||||||  |||||||||||||||| ||    | ||||| ||| ||||||  | |||||||||||||| || | ||| |||||||    
T  19730557 atgcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgacttg 19730656  T
Q  353 agc 355  Q
    |||    
T  19730657 agc 19730659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 34187413 - 34187323
Alignment:
Q  259 gcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||||    |||||||||||||| ||  ||| ||||| ||| ||||||| | |||||||||||||| || | |||||||||||||    
T  34187413 gcctatataagggtga----gcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgag 34187323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 14080567 - 14080526
Alignment:
Q  294 tatgatttacttttcacaacactttctgcacactctttctca 335  Q
    ||||||| |||||||||||||||| || ||||||||||||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctca 14080526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 9277273 - 9277368
Alignment:
Q  259 gcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||| |||||||||||  | |||||||||||||| ||||||| || |||| | ||||||| | || ||||||||||| || |  |||||||||||||    
T  9277273 gcctgtataagggtgagttagcttcaccctcaaggtatgattcac-tttctccacactttttacatactctttctcagttccaatactgacttgagc 9277368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 22692210 - 22692162
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttc 308  Q
    ||||||||| |||||| | |||||||||||||| ||||||| |||||||    
T  22692210 cctatataaaggtgacttagcttcaccctcaagttatgattcacttttc 22692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 355
Target Start/End: Original strand, 26994511 - 26994674
Alignment:
Q  192 tacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaa 291  Q
    ||||||||||||||||| || | |||| |||||| | ||||| || || |||||| |||| | ||||||||||||||||||||| ||||||||||| |||    
T  26994511 tacatgtgtcctctaatcgtccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcacccccaa 26994610  T
Q  292 gatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    | ||||||| |||||||||||||| ||||  |||||||||||||||| | ||||||||||||||    
T  26994611 ggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgagc 26994674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 22903209 - 22903116
Alignment:
Q  262 tatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| || | ||||||||||||||    
T  22903209 tatataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 22903116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 349
Target Start/End: Complemental strand, 20025431 - 20025312
Alignment:
Q  229 aaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactc 328  Q
    ||||||||||| ||||||||||| | |||||||| |||||||||||| | ||||||||||||||  |||||| ||||| ||||||||||||| |||||||    
T  20025431 aaaacccggagacggttattctc-acgcgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacacactc 20025333  T
Q  329 tttctcaatttcgttactgac 349  Q
    ||||||| |||| || |||||    
T  20025332 tttctcagtttcattcctgac 20025312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 354
Target Start/End: Original strand, 27083127 - 27083304
Alignment:
Q  175 ccgcacgaggatcaccctacatgtgtcctctaattgttct-taatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtg 273  Q
    ||||||||||||| | ||| | ||||||||||| || ||| |||| |||||| | |||||| |||| | ||||||||| | ||||||||||  |||||||    
T  27083127 ccgcacgaggatcccgcta-acgtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctc-acgcgcgcctatgcaagggtg 27083224  T
Q  274 acattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    || |  ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| || |||| |||||||||||||    
T  27083225 acttaacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgag 27083304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 32418371 - 32418533
Alignment:
Q  172 cccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataaggg 271  Q
    ||||||| |||||||||||||||| |||||| ||||   | | |||| |||||| | | ||||||||| | ||||  ||  | || || ||||| |||||    
T  32418371 cccccgcgcgaggatcaccctacacgtgtcccctaaccatccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaaggg 32418470  T
Q  272 tgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctc 334  Q
    |||  |||||||| ||||||| ||||||| ||| ||||||||||| ||| |||||||||||||    
T  32418471 tgaacttgcttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctc 32418533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 25333860 - 25333758
Alignment:
Q  253 atgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttg 352  Q
    |||| ||| |||||||| ||||  ||||||||| |||||  ||||||| |||||| |||||||||||| |||||||| ||| | || | |||||||||||    
T  25333860 atgcacgcttatataagagtgaacttgcttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacattactgacttg 25333761  T
Q  353 agc 355  Q
    |||    
T  25333760 agc 25333758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 34493625 - 34493542
Alignment:
Q  266 taagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    |||||||||| | | |||||||||||| ||||||| |||||||||||||||||||  ||||||||  |||||| | ||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggtatgattcacttttcacaacactttct--acactctt--tcaattccattactgacttga 34493542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 24647411 - 24647311
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||||||||  |||||||||||| ||| |||   | ||||||||||||||||  | |||||||||| ||| || | ||||||| |||||    
T  24647411 gcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgag 24647312  T
Q  355 c 355  Q
    |    
T  24647311 c 24647311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 26163858 - 26163789
Alignment:
Q  138 ccaactttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaa 207  Q
    ||||||||| ||||||||||||||  ||||||| || || | |||||||||| ||||| |||||||||||    
T  26163858 ccaactttactgcaccacatcgcacccaagcacacctccacgcgaggatcactctacacgtgtcctctaa 26163789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 25537528 - 25537448
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctca 335  Q
    ||||||||||||||||||||  || ||||||||||||| |||   | ||||||||||||||||  | |||| |||||||||    
T  25537528 gcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctca 25537448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 356
Target Start/End: Complemental strand, 8939028 - 8938934
Alignment:
Q  261 ctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagca 356  Q
    |||||||| |||||| | |||||||||||||  ||||||| ||||||| | ||||||| | |||||||||||||| || |  |||||||| |||||    
T  8939028 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc-ccacactttttacacactctttctcagttccaatactgactagagca 8938934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 21213366 - 21213329
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaag 292  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  21213366 gcgcgcctatataagggtgaacttgcttcaccctcaag 21213329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 22865881 - 22865784
Alignment:
Q  258 cgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||||  |||||||||||||||| ||    | ||||||||||||| ||  | |||||| ||||||| || | ||||| ||||||||    
T  22865881 cgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttgagc 22865784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 25333942 - 25333910
Alignment:
Q  172 cccccgcacgaggatcaccctacatgtgtcctc 204  Q
    |||||||||||||||||||||||| ||||||||    
T  25333942 cccccgcacgaggatcaccctacacgtgtcctc 25333910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 165 - 355
Target Start/End: Original strand, 17143627 - 17143817
Alignment:
Q  165 aagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctat 264  Q
    |||||| ||||| || ||||||| |||||||||||||||||| | || | |||| |||||| |  ||||||| |||| |||||| || |||| ||| |||    
T  17143627 aagcacgcccccacatgaggatcgccctacatgtgtcctctagtcgtccctaatcacacgccgcgaaacccgaaggcagttattttcaatgcacgcttat 17143726  T
Q  265 ataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||  ||| ||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||| || | ||||||||||||||    
T  17143727 ataagggtgatgttgtttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 17143817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 334
Target Start/End: Original strand, 9800927 - 9801131
Alignment:
Q  129 aggaatgcaccaactttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcagg 228  Q
    |||||||| |||  ||||||||||| || ||||| | ||||  ||| ||  ||||| ||||||||||||||||||||||  || | |||| |||||| |     
T  9800927 aggaatgcgccatttttaatgcaccgcaccgcatgcgagcatgcccacgtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgc 9801026  T
Q  229 aaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactc 328  Q
    |||||||| | |||   ||| |  ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  9801027 aaaacccgaatgcgcc-atttttaatgcgtgcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactc 9801125  T
Q  329 tttctc 334  Q
    ||||||    
T  9801126 tttctc 9801131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 336
Target Start/End: Original strand, 2311683 - 2311883
Alignment:
Q  136 caccaactttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaaccc 235  Q
    ||||||||||| |||||| |||| ||| ||||||  ||||||  |||||||||||||||| |  |||||||   || | |||| | ||||   |||||||    
T  2311683 caccaactttagtgcaccgcatcacatccaagcatacccccgtgcgaggatcaccctacaagcatcctctatccgtccgtaatcaaacgctacaaaaccc 2311782  T
Q  236 ggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctca 335  Q
    |||||||||||||||    ||||| ||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| |||||||||    
T  2311783 ggaggcggttattcttatcgcgcgtctaaataagggtgacattgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctca 2311882  T
Q  336 a 336  Q
    |    
T  2311883 a 2311883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 181 - 355
Target Start/End: Complemental strand, 30607125 - 30606951
Alignment:
Q  181 gaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgc 280  Q
    |||||||||  || |||||||||||||  || | |||| |||||| |  |||||||||| | ||||||||  | ||||||||||||||||||| | || |    
T  30607125 gaggatcacgttatatgtgtcctctaaccgtccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttac 30607026  T
Q  281 ttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||| ||| ||| ||||||||||||||||||| | ||||||||||||||| | ||||||||||||||    
T  30607025 ttcaccctcaaggtataattcacttttcacaacactttctactcactctttctcaattccattactgacttgagc 30606951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 355
Target Start/End: Original strand, 28723666 - 28723842
Alignment:
Q  180 cgaggatcaccctacatgtgtcctctaattgttct-taatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacatt 278  Q
    ||||||||||||||||||||||||||||| | ||  | || |||||  | |||| || ||| | ||||||||| | |||||||||||||||| |||||||    
T  28723666 cgaggatcaccctacatgtgtcctctaatcgctccctgatcacacgttgcaaaatccagagacagttattctcaaagcgcgcctatataaggatgacatt 28723765  T
Q  279 gcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    | ||||||||| ||||| |||| ||||||||||||| ||||| |||||||||||| | || | ||| ||||||||||    
T  28723766 gtttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagc 28723842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 351
Target Start/End: Complemental strand, 16704551 - 16704429
Alignment:
Q  229 aaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactc 328  Q
    |||| ||||||||||||||   | | ||||||||||||||||||||  |||||||||||||||| ||||||| ||||||||||||||||||| ||| |||    
T  16704551 aaaatccggaggcggttatcaccaacgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctc 16704452  T
Q  329 tttctcaatttcgttactgactt 351  Q
    |||||||| | | ||||||||||    
T  16704451 tttctcaactccattactgactt 16704429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 355
Target Start/End: Original strand, 8122774 - 8122982
Alignment:
Q  147 atgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggtta 246  Q
    |||||||||||||||||| |||||  ||  || |||||||||| ||||  | |||||||||| || | |||| |||||| | ||||  ||| ||| ||||    
T  8122774 atgcaccacatcgcatacgagcacgtcctggcgcgaggatcacgctac--gcgtcctctaatcgtccctaattacacgccgcaaaattcgggggcagtta 8122871  T
Q  247 ttctcgatgcgcgcctatataa---gggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgtt 343  Q
    ||| | |  |||||||||||||   |||||||||||||||||||||||| ||||||| |||||||||||| |||||  || | | ||| |||||||| ||    
T  8122872 ttcccaacccgcgcctatataataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacgctttcgacatagt-tttttcaatttcatt 8122970  T
Q  344 actgacttgagc 355  Q
    ||||||||||||    
T  8122971 actgacttgagc 8122982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 28715442 - 28715551
Alignment:
Q  242 ggttattctcgatgcgcgcctat-ataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttc 340  Q
    |||||||||| ||||||  |||| |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||| | |||||||||||||| || |    
T  28715442 ggttattctcaatgcgcatctattataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttcc 28715541  T
Q  341 gttactgact 350  Q
     |||||||||    
T  28715542 attactgact 28715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 21342260 - 21342355
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||| || || ||||||||||||  ||||||| |||||||||||||||||||  ||||||||| ||| || | ||||||||||||||    
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagc 21342355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 20622524 - 20622429
Alignment:
Q  262 tatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactt--tctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||  |||||||||||||||| ||||||| |||||||||| |||||  ||| |||||| |||||| || || ||||||||||||||    
T  20622524 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctctatctcattactgacttgagc 20622429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 6109542 - 6109686
Alignment:
Q  173 ccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggt 272  Q
    |||| |||||||||||| ||||||||||| |||||  || | |||| |||||  |  ||| |||||||| |||| || | ||| ||| ||||||||||||    
T  6109542 ccccacacgaggatcacactacatgtgtcatctaaccgtccctaatcacacgttgtgaaatccggaggcagttagtcacaatgtgcgtctatataagggt 6109641  T
Q  273 gacattgcttcaccctcaagatatgatttacttttcacaacactttct 320  Q
    || || |    ||||||||||| ||||| |||||||||||||||||||    
T  6109642 gatatgga---accctcaagatgtgattcacttttcacaacactttct 6109686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 431285 - 431384
Alignment:
Q  256 cgcgcctatataagggtg-acattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||||||||||||||||| |||| ||||||||||||||  |  ||| |||||||||| |||||||  | |||||||||||| || | ||| |||||||||    
T  431285 cgcgcctatataagggtggacat-gcttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgag 431383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 12252064 - 12252012
Alignment:
Q  302 acttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||| ||  | |||||||||||||| ||||||||||||||||||    
T  12252064 acttttcacaacaattcttacacactctttctcattttcgttactgacttgag 12252012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 14860067 - 14860166
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||||||||  |||||||||||||||| ||    | ||||||||||||||||  | || ||| ||||||| || | ||||||| |||||    
T  14860067 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgag 14860166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 17485614 - 17485692
Alignment:
Q  277 ttgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||| ||  ||| | ||| ||||||| | ||| ||||||| ||||||||| | ||||||||||||||    
T  17485614 ttgcttcaccctcaaggtactattcattttacacaacattctctacacactccttctcaattccattactgacttgagc 17485692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 1770901 - 1770848
Alignment:
Q  302 acttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||||||||||||| ||||||||| |||| || | ||||| ||||||||    
T  1770901 acttttcacaacactttctacacactcttcctcagttccattactaacttgagc 1770848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 20118945 - 20118982
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaag 292  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  20118945 gcgcgcctatataagggtgaacttgcttcaccctcaag 20118982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 20122723 - 20122784
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaag 292  Q
    ||||||||| |||||||||   | ||||||||||||||||||||  || |||||||||||||    
T  20122723 aacccggagacggttattccataagcgcgcctatataagggtgaactttcttcaccctcaag 20122784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 13085073 - 13085141
Alignment:
Q  287 ctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||| | ||||| ||||||||||| ||||||| || | ||||||||| |||| ||| ||||||||||    
T  13085073 ctcaaggtttgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagc 13085141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 43171888 - 43172065
Alignment:
Q  139 caactttaatgcaccacatcgcatacaagcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccgga 238  Q
    |||||||||| |||| ||| |||||||| |||||||| |  ||||||||||||| |  ||||||||||| ||||| |||| | | || | ||||||||||    
T  43171888 caactttaatacaccgcatagcatacaaacactcccctgtgcgaggatcaccctccccgtgtcctctaactgttcctaatcaaatgccgcaaaacccgga 43171987  T
Q  239 ggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacact 316  Q
    ||| ||||||||| || |||||||||||||||||||  |||||||||||||||  ||||||| |||||||||||||||    
T  43171988 ggcagttattctcaatccgcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 5863389 - 5863210
Alignment:
Q  176 cgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgac 275  Q
    ||||||||||||||  |||| |||||||||||  || | |||| ||| || |  |||||||||||||||||||  | | ||||||||||| |||||||||    
T  5863389 cgcacgaggatcacgttacacgtgtcctctaaccgtccctaatcacatgccgtgaaacccggaggcggttatttccaacgcgcgcctatacaagggtgac 5863290  T
Q  276 attgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||| |||||||||| ||||||| |||||| |||||| ||||| |||||||||||||| ||   ||||||||||||||    
T  5863289 attgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttgagc 5863210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 29373595 - 29373468
Alignment:
Q  229 aaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactc 328  Q
    |||| ||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||||    
T  29373595 aaaatccggaggcgtttgtcctcgatgcgcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactc 29373496  T
Q  329 tttctcaatttcgttactgacttgagca 356  Q
    |||||||||| |   |||||||||||||    
T  29373495 tttctcaattacacaactgacttgagca 29373468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 355
Target Start/End: Complemental strand, 39879584 - 39879410
Alignment:
Q  182 aggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgct 281  Q
    |||||||| ||| | |||||||| || ||||| |||| |||||| | ||||  ||||||||||||||  | ||| ||| |||||||||||||||||||||    
T  39879584 aggatcacgctataggtgtcctccaaatgttcctaatcacacgccgcaaaattcggaggcggttatttccaatgtgcgtctatataagggtgacattgct 39879485  T
Q  282 t-caccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    | | |||||| |  |||||| |||||| |||||||||| | |||||||||||||| |||| ||||||||||||||    
T  39879484 tcccccctcatggcatgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagc 39879410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 355
Target Start/End: Original strand, 26762790 - 26762979
Alignment:
Q  166 agcactcccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctata 265  Q
    ||||| |||| || ||||||||||| |||| |||||||||||  || | |||| ||||||   |||||||||||| ||||||   | |  ||||||||||    
T  26762790 agcacgcccctgcgcgaggatcaccatacaagtgtcctctaaccgtccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctata 26762889  T
Q  266 taagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    || ||||| | |||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||| | | || | ||||||||||||||    
T  26762890 tatgggtgtccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagc 26762979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 355
Target Start/End: Original strand, 9135247 - 9135429
Alignment:
Q  172 cccccgcacgaggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataaggg 271  Q
    ||||||||||||||||||| |||||||||||||     || | |||| ||||||   | ||||||||| |||||||   | || || | |||||||||||    
T  9135247 cccccgcacgaggatcaccttacatgtgtcctcctcc-gtccctaatcacacgctacataacccggagacggttatgaccaatacgtgtctatataaggg 9135345  T
Q  272 tgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||  |||||||||||||||| ||||||| ||||||||||||| ||| | ||||||||||||||||| | ||||||||||||||    
T  9135346 tgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagc 9135429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 13292091 - 13292191
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||||||||||||| |||||  |||||||||||||||| ||    | ||||||||||||||||  | |||||||||| ||| |||| |||||||||||||    
T  13292091 gcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgacttgag 13292190  T
Q  355 c 355  Q
    |    
T  13292191 c 13292191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 16203840 - 16203768
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttc 332  Q
    |||||||||||||||| || ||||||||| ||| |||| || |||||||| |||||||| | |||||||||||    
T  16203840 cctatataagggtgacttttcttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 9867938 - 9868007
Alignment:
Q  286 cctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||| ||||||| |||||| |||||||||||| || |||||| |||| || | ||||||||||||||    
T  9867938 cctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagc 9868007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 16204409 - 16204340
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactct 329  Q
    |||||||||||||||  || ||||||||| ||| |||| || ||||||||||||||||| | ||||||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 7486659 - 7486568
Alignment:
Q  264 tataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||  || ||||||| | |||  |||||| |||||||||||||| |||| |||| ||||||||| || | ||||||| ||||||    
T  7486659 tataagggtgaactttcttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagc 7486568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 16987060 - 16987159
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||||||||  |||||||||| | |||  |    | ||||||||||||||||  | ||||||||||||||||| | |||||| ||||||    
T  16987060 gcgcgcctatataagggtgaacttgcttcacctttaagggacacatcacttttcacaacacttcttacacactctttctcaattccattactggcttgag 16987159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 12644909 - 12644808
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttca-caacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    |||||||| || ||||||||  |||||||||||||||  ||  ||| |||||||| ||||||||||  |||||| ||||||| || | |||||||| |||    
T  12644909 gcgcgcctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcaccaacactttccacacactttttctcagttccattactgacctga 12644810  T
Q  354 gc 355  Q
    ||    
T  12644809 gc 12644808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 21161325 - 21161264
Alignment:
Q  294 tatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||| ||||||||||||||||||| ||||| |||||| |  | | ||||||||||||||    
T  21161325 tatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagc 21161264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 10287564 - 10287664
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||||||||||||||||| |  ||| | |||||||||| |||   | ||||||||||||||||  | |||||| |||||||  | | |||||||||||||    
T  10287564 gcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccattactgacttgag 10287663  T
Q  355 c 355  Q
    |    
T  10287664 c 10287664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 183 - 355
Target Start/End: Complemental strand, 14117 - 13945
Alignment:
Q  183 ggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgctt 282  Q
    |||||||| |||  |||||||||||  || | |||| |||| | | |||||| |||||||||||||| | |||| | |||||||||||||||  ||||||    
T  14117 ggatcaccatacgcgtgtcctctaacggtccctaatcacacaccgcaaaacctggaggcggttattcccaatgcacacctatataagggtgatcttgctt 14018  T
Q  283 caccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||| ||||||| |||| |||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  14017 caccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagc 13945  T

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Target: scaffold0505 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 355
Target Start/End: Complemental strand, 8081 - 7908
Alignment:
Q  182 aggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgct 281  Q
    |||||||| ||||| |||||||||||  |||  |||||||| || | |||||||||| ||| |||||| | |||||   |||||||| |||||||||| |    
T  8081 aggatcacgctacacgtgtcctctaaccgttgctaatgacatgctgcaaaacccggatgcgattattcccaatgcggctctatataatggtgacattgtt 7982  T
Q  282 tcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||| |||||  ||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||    
T  7981 tcacactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagc 7908  T

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Target: scaffold0023 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 355
Target Start/End: Original strand, 95705 - 95878
Alignment:
Q  182 aggatcaccctacatgtgtcctctaattgttcttaatgacacgcaggaaaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgct 281  Q
    |||||||| |||||||||||||||||  || | |||| |||||| | ||||| ||||||  | |||||   | ||| ||||||||||||||||| |||||    
T  95705 aggatcactctacatgtgtcctctaaccgtccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgct 95804  T
Q  282 tcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||| || | ||||| ||||||||    
T  95805 tcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagc 95878  T

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Target: scaffold0054 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 355
Target Start/End: Original strand, 68745 - 68868
Alignment:
Q  230 aaacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactct 329  Q
    |||||| ||||| ||||||||| | ||| ||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||  | |||||    
T  68745 aaacccagaggcagttattctcaacgcgtgcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttct--atactct 68842  T
Q  330 ttctcaatttcgttactgacttgagc 355  Q
    |||||| || | ||||| ||||||||    
T  68843 ttctcagttccattactaacttgagc 68868  T

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Target: scaffold0291 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 8525 - 8645
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctt 330  Q
    ||||||||| ||||||| ||| | ||||||||||||||||||||  ||    |||||| ||| ||||||| ||||||||||||||||||| |||||| ||    
T  8525 aacccggagacggttatgctcaacgcgcgcctatataagggtgaagtt----cacccttaaggtatgattcacttttcacaacactttctacacactgtt 8620  T
Q  331 tctcaatttcgttactgacttgagc 355  Q
    | ||| |||| ||||||||||||||    
T  8621 tttcagtttcattactgacttgagc 8645  T

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Target: scaffold0291; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 15403 - 15498
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||||||||||||  |||||||||||||||| ||||||| |||||||||||||||||||  | ||||||||||| || | ||||||||| ||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccattactgactggagc 15498  T

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Target: scaffold0140 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 6445 - 6321
Alignment:
Q  231 aacccggaggcggttattctcgatgcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctt 330  Q
    ||||||||| |||||||  || | | |||||||||||||| |||  ||||||||| |||||| || || | ||||||||||||||||||| |||||| ||    
T  6445 aacccggagacggttatgttcaacgtgcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatt 6346  T
Q  331 tctcaatttcgttactgacttgagc 355  Q
    ||||| || | ||||||||||||||    
T  6345 tctcagttccattactgacttgagc 6321  T

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Target: scaffold0002 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 120979 - 121080
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||||||||  |||||||||||||||| ||    | ||||||||||||||||| | |||||||||||||| || | |||||||||| ||    
T  120979 gcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgacttaag 121078  T
Q  355 ca 356  Q
    ||    
T  121079 ca 121080  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 379837 - 379743
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgactt 351  Q
    ||||||||||| ||||||  |||||||||||||||| ||    | ||||||||||||||||  | |||||||||||||| || | ||||||||||    
T  379837 gcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccattactgactt 379743  T

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Target: scaffold0057 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 73771 - 73851
Alignment:
Q  256 cgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaa 336  Q
    ||||||||||||  |||||  |||||||||||| ||| ||||||||||||||||||||||||||| | |||||||| ||||    
T  73771 cgcgcctatatattggtgaacttgcttcaccctgaaggtatgatttacttttcacaacactttctacgcactctttttcaa 73851  T

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Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 210 - 311
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgattt-acttttcacaacactttctgcacactctttctcaatttcgttactgacttga 353  Q
    ||||||||| ||||||||||  |||||||||||||||| ||   | | ||||||||||||||||  | |||||||||||||| || | ||||||||||||    
T  210 gcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacacttcttacacactctttctcagttccattactgacttga 309  T
Q  354 gc 355  Q
    ||    
T  310 gc 311  T

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Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 24825 - 24871
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgattt 301  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  24825 gcgcgcctatataaggttgacattgcttcaacctcaaggtatgattt 24871  T

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Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 29286 - 29344
Alignment:
Q  295 atgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    |||||| |||||||||||||||||||  |||||||| || | |||| ||||||||||||||    
T  29286 atgattcacttttcacaacactttct--acactcttccttattttcattactgacttgagc 29344  T

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Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 35327 - 35277
Alignment:
Q  304 ttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    ||||||||||||||||  |||||||||||||| || |||||||||||||||    
T  35327 ttttcacaacactttccacacactctttctcagttccgttactgacttgag 35277  T

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Target: scaffold0380 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 6830 - 6928
Alignment:
Q  257 gcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgagc 355  Q
    ||||||||| ||||||||  ||| |||||||||||| ||    | ||||||||||||||||  | ||||||| |||||| ||||  |||||||||||||    
T  6830 gcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactcgttctcagtttcaatactgacttgagc 6928  T

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Target: scaffold0205 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 23009 - 22909
Alignment:
Q  255 gcgcgcctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttctgcacactctttctcaatttcgttactgacttgag 354  Q
    |||| |||| ||||||||||  |||||||||||||||| ||    | ||||||||||||||||  | |||||  ||||||| || | |||||||||||||    
T  23009 gcgcacctacataagggtgaacttgcttcaccctcaaggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgag 22910  T
Q  355 c 355  Q
    |    
T  22909 c 22909  T

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Target: scaffold0101 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 10704 - 10764
Alignment:
Q  260 cctatataagggtgacattgcttcaccctcaagatatgatttacttttcacaacactttct 320  Q
    ||||||||| |||||  ||||||||||||| ||  |||||| |||||||||||| ||||||    
T  10704 cctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaactctttct 10764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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