View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17112_high_2 (Length: 695)

Name: NF17112_high_2
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17112_high_2
NF17112_high_2
[»] chr3 (1 HSPs)
chr3 (1-677)||(45704717-45705397)


Alignment Details
Target: chr3 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 45704717 - 45705397
Alignment:
Q  1 ttggaatgcgacgatgcacaccaaatgtgtgcatatgttggctcattatttcacatgtttgtgccagacttgaaagagaatgttatcgaagcattgagta 100  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45704717 ttggaatgtgacgacgcacaccaaatgtgtgcatatgttggctcattatttcacatgtttgtgccagacttgaaagagaatgtcatcgaagcattgagta 45704816  T
Q  101 actgtggtattgaggtaacagaggtggattcagatgctgttttaaggatttcaggattggaactggaagatatcccttccattactcgtagcgaatttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45704817 actgtggtattgaggtaacagaggtggattcagatgctgttttaaggatttcaggattggaactggaagatatcccttccattactcgtagcgaatttgg 45704916  T
Q  201 gataatatgggcttattgcatcctttgtctgtttaaaaacccttcagccgtcaattataaaaattatatgagcagttgaattgctgaactgcttggtttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  45704917 gataatatgggcttattgcatcctttgtctgtttaaaaacccttcagtcatcaattataaaaattatatgagtagtcgaattgctgaactgcttggtttg 45705016  T
Q  301 gtacacacaccgtctgctgaacaggttaagattccgttgagactggaacatgccaaaaatttgagacagatgttaggacttaggatctcaagagaagttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  45705017 gtacacacaccgtctgctgaacaggttaagattccgttgagactggaacatgccaaaaatttgagacagatg-------ttaggatctcaagagaagttt 45705109  T
Q  401 tgcaaagaggtcttggtatttatcatgaacaacgtcaacaaatctagtttccttcggtcaacaattcaatacttggacaggatt-----------tatca 489  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||  |    
T  45705110 tgcaaagaggtcttggtatttatcataaacaacgtcaacaaatctagtttccttcggtcaacaattcaatacttggacaggattttggcttggtctaata 45705209  T
Q  490 tgagcagctttacaattatttttgagtcattgataatgacaaaatcaccagtaatttatgaaagatttttgcgtgctgaagctctaaaatttgcagatac 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45705210 tgagcagctttacaattatttttgagtcattgataatgacaaaatcaccagtaatttatgaaagatttttgcgtgctgaagctctaaaatttgcagatac 45705309  T
Q  590 ggtggaaccaatttgtgccagtgactatcctcagtactttcgttatttcgcggcatggactgatcatatgcatctcttggatcgaaac 677  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45705310 ggtggaagcaatttgtgccagtgactatcctcagtactttcgttatttcgcggcatggaccgatcatatgcatctcttggatcgaaac 45705397  T

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