View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_high_3 (Length: 651)
Name: NF17112_high_3
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 11 - 632
Target Start/End: Complemental strand, 41486805 - 41486184
Alignment:
| Q |
11 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486805 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
41486706 |
T |
|
| Q |
111 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttaaaatgaatttaacttcaagacaaaaatttaaaccag |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41486705 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttcaaatgaatttaacttcaagacaaaaatttaaaccag |
41486606 |
T |
|
| Q |
211 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaaattccaaaaaacttcaactcctttca |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41486605 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaatttccaaaaaacttcaactcctttca |
41486506 |
T |
|
| Q |
311 |
aagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcacta |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486505 |
aagttttaacacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcacta |
41486406 |
T |
|
| Q |
411 |
accattggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486405 |
accattggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaa |
41486306 |
T |
|
| Q |
511 |
gcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccag |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486305 |
gcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccag |
41486206 |
T |
|
| Q |
611 |
agttctggtattgggtatctac |
632 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41486205 |
agttctggtattgggtatctac |
41486184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 73 - 390
Target Start/End: Complemental strand, 41487610 - 41487294
Alignment:
| Q |
73 |
gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat |
171 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||| ||||| | |||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
41487610 |
gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat |
41487519 |
T |
|
| Q |
172 |
ttaaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaattgataccacctactcgtcgtgattaattttcaac |
263 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||| |||| ||| |
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| T |
41487518 |
ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agacgattgataccaccaactcgtctcgattactttttaac |
41487420 |
T |
|
| Q |
264 |
ataaatttcaataatcaacaaattccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacat |
363 |
Q |
| |
|
||| |||| | |||||||||| ||| ||||||||||||||| || |||||||||||| | |||||| | ||||||||||||||| ||| ||||||||| |
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| T |
41487419 |
atatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaaccttaagtcacaagcattatctgctaaaaaagtgctcctacat |
41487321 |
T |
|
| Q |
364 |
gataagtaactatatataacaaccata |
390 |
Q |
| |
|
||||||||| |||||||||||||||| |
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|
| T |
41487320 |
gataagtaatgatatataacaaccata |
41487294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 424 - 632
Target Start/End: Complemental strand, 41472264 - 41472058
Alignment:
| Q |
424 |
tgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagct |
523 |
Q |
| |
|
||||| |||||||||||||| |||||||| || ||| | | || ||||||||| |||| |||||| ||||||||||||||||||||||||||||| | |
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|
| T |
41472264 |
tgtaccaaagtctgttagagttagaatttaaattaaatttttggc--atatataagcctaactctaagttcttaccgcccaaatgaagcctcaataagtt |
41472167 |
T |
|
| Q |
524 |
ttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattg |
623 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
41472166 |
ttctttcccttatttaatatccattgcctaattaaatgggaaacaccctccttcaacgtggccttccttccttccctaaaattccagagttccggtattg |
41472067 |
T |
|
| Q |
624 |
ggtatctac |
632 |
Q |
| |
|
|||| |||| |
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|
| T |
41472066 |
ggtacctac |
41472058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 476 - 632
Target Start/End: Complemental strand, 41479215 - 41479059
Alignment:
| Q |
476 |
taagtctaattctaagctcttaccgcccaaatgaagcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttcct |
575 |
Q |
| |
|
|||||||||||||| | || |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |
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| T |
41479215 |
taagtctaattctatgttcataccacccaaatgaagcctcaataagttttctttcccttatttaatttccattgcctaattaaatgggaaacaccctcct |
41479116 |
T |
|
| Q |
576 |
tcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctac |
632 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
41479115 |
tcaatgtggccttccttccttccctaaaattccagagttccggtattgggtacctac |
41479059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 463 - 632
Target Start/End: Complemental strand, 40753482 - 40753313
Alignment:
| Q |
463 |
tcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagctttctttcccttatttaatctccattgcttaattaaatgg |
562 |
Q |
| |
|
|||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||||||| |
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|
| T |
40753482 |
tcctgcatatgtataagtctagttccaagttcttaccgcccaaatgaagcctcaataagttttctttcccttgtttgatttccatatcttaactaaatgg |
40753383 |
T |
|
| Q |
563 |
gaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctac |
632 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| |||| |
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|
| T |
40753382 |
gaaactccctccttcaacgaagccttccttccttccttaaaattccagagttccggtactgggtacctac |
40753313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 40753805 - 40753660
Alignment:
| Q |
192 |
agacaaaaatttaaaccagactacaaaagggagacaattga---taccacct---actcgtcgtgattaattttcaacataaatttcaataatcaacaaa |
285 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||| | |||||| |||| ||||| ||||| |||||||| || |
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|
| T |
40753805 |
agacaaaaatttaaaccaggcaacaaaagggagacgattgatagtaccacctaccactcaccttgattactttttgacatatgtttcagtaatcaac-aa |
40753707 |
T |
|
| Q |
286 |
ttccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcata |
332 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||||| ||||||||||| |
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|
| T |
40753706 |
tttcaaaaaacttcaacttgtttcgaagttttaacccaaaagtcata |
40753660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 41479473 - 41479424
Alignment:
| Q |
188 |
ttcaagacaaaaatttaaaccagactacaaaagggagacaattgataccac |
238 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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|
| T |
41479473 |
ttcaagacaaaaatttaaaccaaactac-aaagagagacaattgataccac |
41479424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 40753958 - 40753902
Alignment:
| Q |
50 |
aattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaa |
107 |
Q |
| |
|
|||| ||||||||||||||| | ||| |||||| |||||||||||||||||||||||| |
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|
| T |
40753958 |
aattttttttaaggcaacatctagctgattgtt-taaaaacagttcaaactaaatcaa |
40753902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 40753883 - 40753830
Alignment:
| Q |
99 |
ctaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttattttta |
157 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
40753883 |
ctaaatcaagaatataatgctttt-----gtatggaaatgatataatgctttatcttta |
40753830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 424 - 624
Target Start/End: Original strand, 16407135 - 16407333
Alignment:
| Q |
424 |
tgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagct |
523 |
Q |
| |
|
||||| |||||||||||||||| |||||| || ||| | ||| ||||||||| || ||| |||||| | ||||||||||||||| ||||||||||| | |
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|
| T |
16407135 |
tgtacaaaagtctgttagagctcgaatttaaattaaatttccggcatatata--agcgtaactctaagttattaccgcccaaatgatgcctcaataagtt |
16407232 |
T |
|
| Q |
524 |
ttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattg |
623 |
Q |
| |
|
|||||||| ||| || | |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
16407233 |
ttctttcctttacttgctttccatttattaattaaatgcgaaacaccttccttcaacgaagccttccttccttccttaaaattccagagttccggtattg |
16407332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 543 - 630
Target Start/End: Complemental strand, 52482385 - 52482298
Alignment:
| Q |
543 |
tccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatct |
630 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||||| |||||| |
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|
| T |
52482385 |
tccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatct |
52482298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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