View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_high_5 (Length: 618)
Name: NF17112_high_5
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 179 - 611
Target Start/End: Complemental strand, 11159677 - 11159232
Alignment:
| Q |
179 |
tcaaataattgacatcattcccctaaaaaagattgacaacattattattattactttattaatactaatatataagagtggattgcgtgtggtt----ag |
274 |
Q |
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| T |
11159677 |
tcaaataattgacatcattcccctaaaaaagatcgacaacattattattactactttattaatactaatatataagagtggattgcgtgtggttggttag |
11159578 |
T |
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| Q |
275 |
gaagctcaaagaaattatgatattcatttggtggtggatggctgtgaagatatatgttcaggtta-aattgcagccatgcaca--------ttgccacga |
365 |
Q |
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| T |
11159577 |
gaagctcaaagaaattatgatattcatttggtggtggatggctgtgaagatatattttcaggttacaattgcagccatgcacaattgcacattgccacga |
11159478 |
T |
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| Q |
366 |
ctctccaacgtgtgctcttaggtgtaactcaatggggatgacacatatcgtaaggattaaataaaagaggctacaagatacgagtatatgtgacccaaca |
465 |
Q |
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| T |
11159477 |
ctctccaacgtgtgctcttaggtgtaactcaatggggatgacacatatcgtaaggattaaataaaagaggctacaagatacgagtatatgaaacccaaca |
11159378 |
T |
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| Q |
466 |
taaatcatattcatgttaggtcagactatttttaaaacaaataaagtcaagtttattttaagatgtctatttagnnnnnnnaaaaggttatgggcagcta |
565 |
Q |
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| T |
11159377 |
taaatcatattcatgttaggtcagactatttttaaaacaaataaagtcaagtttattttaagatgtctatttagtttttttaaaaggttatgggcagcta |
11159278 |
T |
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| Q |
566 |
aaaaacgtttttgggccaacttgtttttaaattgagaataatctac |
611 |
Q |
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| T |
11159277 |
aaaaacgtttttgggccaacttgattttaaattgagaataatctac |
11159232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 11159953 - 11159790
Alignment:
| Q |
18 |
agaagaagcattttgtttggaagaaagaacagtacatgcacaatgtcttctggaatttgggaccagaaactgaacggataaaattcggtcaggtcagtgg |
117 |
Q |
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| T |
11159953 |
agaagaagcattttgtttggaagaaagaacagtacatgcacaatgtcttctggaatttgggaccagaaactgaacggataaaattcggtcaggtcagtgg |
11159854 |
T |
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| Q |
118 |
ccactcactggcaattaggtgattggctgttttggttaggttatatgacaatccattttcatca |
181 |
Q |
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| T |
11159853 |
ccactcactggctattaggtgattggctgttttggttaggtcgtatgacaatccattttcatca |
11159790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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