View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17112_high_9 (Length: 540)

Name: NF17112_high_9
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17112_high_9
NF17112_high_9
[»] chr4 (20 HSPs)
chr4 (18-530)||(5162503-5163015)
chr4 (55-528)||(5184372-5184838)
chr4 (331-428)||(55264632-55264729)
chr4 (357-495)||(53924395-53924530)
chr4 (331-426)||(55264380-55264474)
chr4 (365-422)||(44137405-44137462)
chr4 (369-489)||(54458706-54458826)
chr4 (331-426)||(13302119-13302213)
chr4 (381-496)||(49448188-49448303)
chr4 (331-426)||(55284053-55284148)
chr4 (365-428)||(33614384-33614447)
chr4 (445-496)||(45921830-45921881)
chr4 (348-462)||(54090992-54091106)
chr4 (367-428)||(13119381-13119442)
chr4 (349-428)||(13119191-13119270)
chr4 (349-428)||(39051328-39051406)
chr4 (369-428)||(40942675-40942734)
chr4 (368-426)||(7402978-7403036)
chr4 (349-426)||(13432756-13432832)
chr4 (331-411)||(3465369-3465449)
[»] chr2 (14 HSPs)
chr2 (348-495)||(6511016-6511163)
chr2 (353-428)||(22191386-22191461)
chr2 (347-428)||(17658774-17658855)
chr2 (347-407)||(17672942-17673002)
chr2 (352-415)||(22191527-22191590)
chr2 (389-496)||(32502875-32502982)
chr2 (365-422)||(32013984-32014041)
chr2 (347-407)||(17627870-17627930)
chr2 (365-428)||(33940037-33940100)
chr2 (381-428)||(39760175-39760222)
chr2 (337-407)||(17184764-17184834)
chr2 (331-400)||(35736709-35736778)
chr2 (357-405)||(2451166-2451214)
chr2 (357-489)||(32502985-32503117)
[»] chr5 (13 HSPs)
chr5 (349-426)||(36184738-36184815)
chr5 (350-428)||(31065847-31065925)
chr5 (347-426)||(11275790-11275869)
chr5 (349-428)||(33391514-33391593)
chr5 (334-415)||(20399019-20399100)
chr5 (350-428)||(31050968-31051046)
chr5 (357-402)||(987328-987373)
chr5 (365-426)||(8840022-8840083)
chr5 (337-426)||(31046143-31046231)
chr5 (365-428)||(8285238-8285301)
chr5 (357-400)||(36184524-36184567)
chr5 (366-411)||(27354306-27354351)
chr5 (349-422)||(31066088-31066161)
[»] chr6 (18 HSPs)
chr6 (349-412)||(9530547-9530610)
chr6 (349-431)||(19121854-19121936)
chr6 (349-428)||(21969143-21969222)
chr6 (381-490)||(3889971-3890080)
chr6 (351-428)||(19121985-19122062)
chr6 (349-418)||(21394254-21394323)
chr6 (331-403)||(3889883-3889955)
chr6 (349-401)||(30747944-30747996)
chr6 (349-428)||(3960852-3960931)
chr6 (351-426)||(8446945-8447020)
chr6 (351-426)||(8455749-8455824)
chr6 (366-424)||(17333311-17333368)
chr6 (382-428)||(17437558-17437604)
chr6 (446-496)||(17437695-17437745)
chr6 (445-487)||(23765853-23765895)
chr6 (351-396)||(21969306-21969351)
chr6 (369-406)||(24794190-24794227)
chr6 (386-478)||(15965646-15965738)
[»] chr3 (18 HSPs)
chr3 (349-428)||(55447182-55447261)
chr3 (349-428)||(39840659-39840738)
chr3 (331-428)||(38181332-38181429)
chr3 (348-478)||(33075219-33075349)
chr3 (348-405)||(27812204-27812261)
chr3 (349-426)||(20124246-20124322)
chr3 (365-496)||(29504832-29504963)
chr3 (357-428)||(45965804-45965875)
chr3 (365-428)||(46164085-46164148)
chr3 (350-428)||(40472831-40472909)
chr3 (350-412)||(40860967-40861029)
chr3 (365-422)||(31300371-31300428)
chr3 (351-428)||(39840892-39840969)
chr3 (349-426)||(42045771-42045848)
chr3 (365-421)||(1431476-1431532)
chr3 (365-405)||(3910247-3910287)
chr3 (367-407)||(48338573-48338613)
chr3 (349-405)||(49782221-49782277)
[»] chr1 (21 HSPs)
chr1 (349-422)||(28504711-28504784)
chr1 (331-425)||(46410826-46410920)
chr1 (348-428)||(10595501-10595581)
chr1 (349-496)||(6219625-6219772)
chr1 (357-428)||(7790411-7790481)
chr1 (349-400)||(8792967-8793018)
chr1 (331-406)||(10377568-10377643)
chr1 (331-412)||(6219766-6219847)
chr1 (352-405)||(27293283-27293336)
chr1 (351-428)||(27562671-27562748)
chr1 (351-423)||(38576576-38576648)
chr1 (334-428)||(23399510-23399607)
chr1 (365-415)||(15395209-15395259)
chr1 (351-428)||(38783894-38783971)
chr1 (380-428)||(34835619-34835667)
chr1 (334-400)||(40650039-40650104)
chr1 (367-428)||(4066923-4066984)
chr1 (337-414)||(27293426-27293503)
chr1 (369-406)||(34835740-34835777)
chr1 (445-489)||(27293350-27293394)
chr1 (386-426)||(46410682-46410722)
[»] scaffold0022 (1 HSPs)
scaffold0022 (365-422)||(122547-122604)
[»] chr8 (11 HSPs)
chr8 (331-428)||(10028633-10028730)
chr8 (347-428)||(10028741-10028822)
chr8 (351-495)||(33229497-33229635)
chr8 (349-426)||(21136587-21136664)
chr8 (349-426)||(10028876-10028953)
chr8 (346-427)||(23961644-23961725)
chr8 (353-405)||(41687849-41687901)
chr8 (348-407)||(5840352-5840411)
chr8 (365-415)||(23768775-23768825)
chr8 (448-489)||(10028813-10028854)
chr8 (448-496)||(5846951-5846999)
[»] chr7 (14 HSPs)
chr7 (351-405)||(36478557-36478611)
chr7 (367-426)||(21248998-21249057)
chr7 (357-428)||(41008922-41008993)
chr7 (349-428)||(42709917-42709996)
chr7 (351-495)||(10524976-10525114)
chr7 (351-496)||(30935271-30935416)
chr7 (368-428)||(6026-6086)
chr7 (334-421)||(3248445-3248532)
chr7 (365-428)||(3248336-3248399)
chr7 (359-426)||(26752017-26752084)
chr7 (386-476)||(12427916-12428006)
chr7 (349-406)||(12427833-12427890)
chr7 (351-428)||(16830294-16830371)
chr7 (365-421)||(32047272-32047328)
[»] scaffold0528 (1 HSPs)
scaffold0528 (350-428)||(1895-1973)
[»] scaffold0154 (1 HSPs)
scaffold0154 (365-428)||(6220-6283)
[»] scaffold0137 (1 HSPs)
scaffold0137 (365-428)||(17116-17179)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 5162503 - 5163015
Alignment:
Q  18 catacaacttctgttaccatctttgtcgtcatatcatatccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162503 catacaacttctgttaccatctttgtcgtcatatcatatccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgca 5162602  T
Q  118 gccattgaccctgcagcagccattgattctgtgacaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcg 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162603 gccattgacccggcagcagccattgattctgtgacaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcg 5162702  T
Q  218 agagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162703 agagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcat 5162802  T
Q  318 taattaattcttcaaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttct 417  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162803 taattaattcttcaaccaccaaatcgggtcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttct 5162902  T
Q  418 caaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgcttttgtaagtaattcatt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162903 caaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgcttttgtaagtaattcatt 5163002  T
Q  518 atgagaccctatg 530  Q
    |||||||||||||    
T  5163003 atgagaccctatg 5163015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 55 - 528
Target Start/End: Original strand, 5184372 - 5184838
Alignment:
Q  55 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgcagccattgaccctgcagcagccattgattctgtgacag 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5184372 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgcagccattgacccggcagcagccattgattctgtgacag 5184471  T
Q  155 gccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcgagagcatgctctgtcgatggaatcattcccttctaga 254  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184472 gccctatgctagagtattattgaaaagacgaaaagaaaacgagcaaaaactgttttttactcgagagcatgctctgtcgatggaatcattcccttctaga 5184571  T
Q  255 gagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcattaattaattcttcaaccaccaaatcggttcatgtctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||      
T  5184572 gagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcaataa-taattcttcaagcaccaaatcggtccatgtc-- 5184668  T
Q  355 tataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaa 454  Q
      |||| ||  ||||||||| || ||||||||||||||||||||||||| ||  | | ||| |||||||||||| ||||| || | ||||||||||||||    
T  5184669 --taagcca--ctcaaattaatcactaactctattaatatttcaaattattcattttttttatcaaaagtttctgaaccagatccttcgacatgtgacaa 5184764  T
Q  455 aaacataaagacaaggacctaattaacaaacttttaacaaagtgcttttgtaagtaattcattatgagacccta 528  Q
    ||||||||||| ||||  |||||| |||||||||| || |||||||||||||||||||||||||||||||||||    
T  5184765 aaacataaagaaaaggttctaattgacaaacttttgactaagtgcttttgtaagtaattcattatgagacccta 5184838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 55264729 - 55264632
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||| | ||| |||||||||| |||| | |||||||||||||||| | |||||||||||||||||  ||||| ||||||| ||||||||||||    
T  55264729 aaccaccaatttggtccatgtctttacaagtgactctcaaattagtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttct 55264632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 495
Target Start/End: Original strand, 53924395 - 53924530
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaa 456  Q
    |||||||  ||||||||||| | | ||||||||||||   |||| |||||  ||||||| |||||||||||| ||  || ||||||  ||||||||||||    
T  53924395 taagtcaccctcaaattagtatgtgactctattaata---caaactagtcattgtctttgtcaaaagtttctcaattacgttcctcaccatgtgacaaaa 53924491  T
Q  457 acataaagacaaggacctaattaacaaacttttaacaaa 495  Q
    |||||||||||| || |||||| | |||||||| |||||    
T  53924492 acataaagacaatgatctaattgaaaaacttttgacaaa 53924530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 426
Target Start/End: Original strand, 55264380 - 55264474
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||||| ||| | ||||||||||||||| | |||| |||||| || ||||||||||||||||||| |||||  ||||||| ||||||||||    
T  55264380 aaccaccaaattggt-cgtgtctttataagtcactttcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagttt 55264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 44137405 - 44137462
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 422  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||    
T  44137405 tctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaa 44137462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 489
Target Start/End: Complemental strand, 54458826 - 54458706
Alignment:
Q  369 aaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaa 468  Q
    |||||| |||| |||||||||||||||||||| || | ||||||||| |||||||| |||  |  |  | |||||  ||||||||||||||| |||||||    
T  54458826 aaattaatctcaaactctattaatatttcaaactaatatctgtctttgtcaaaagtgtctcgattaggtccctcgttatgtgacaaaaacattaagacaa 54458727  T
Q  469 ggacctaattaacaaactttt 489  Q
    ||| |||||| | ||||||||    
T  54458726 ggatctaattgagaaactttt 54458706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 426
Target Start/End: Original strand, 13302119 - 13302213
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||||| | | | ||||||| ||||||| ||||||||||||| ||   |||||||| |||||||| |||||||||||||| ||||||||||    
T  13302119 aaccaccaaattgatccctgtctttgtaagtcattctcaaattagtccctgcttctattaacatttcaaa-tagtctctgtctttttcaaaagttt 13302213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 496
Target Start/End: Complemental strand, 49448303 - 49448188
Alignment:
Q  381 aactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaa 480  Q
    |||| ||||||||||||||| |||||| ||||||| |||||||||| | ||  | ||  |||| ||| |||||||||||||||||||  || |||||| |    
T  49448303 aactatattaatatttcaaactagtctttgtctttgtcaaaagtttatcaattagatcgctcgtcatatgacaaaaacataaagacagtgatctaattga 49448204  T
Q  481 caaacttttaacaaag 496  Q
     |||||||| ||||||    
T  49448203 gaaacttttgacaaag 49448188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 426
Target Start/End: Complemental strand, 55284148 - 55284053
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    |||||||||||  ||  |||| ||||||||||| | | |||||||||||||| ||||||||||||||||  |||| |||||||||  |||||||||    
T  55284148 aaccaccaaattagtctatgtttttataagtcattattaaattagtctctaattctattaatatttcaatctagtttctgtctttgccaaaagttt 55284053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 33614447 - 33614384
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||||  | ||| ||||||||||||||| ||||||||||||||  |||||||||||    
T  33614447 tctcaaattagtccatgactttattaatatttcaaactagtctctgtctttgacaaaagtttct 33614384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 45921830 - 45921881
Alignment:
Q  445 catgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 496  Q
    |||||||||||||||||||||||| ||||||||| | |||||||| ||||||    
T  45921830 catgtgacaaaaacataaagacaatgacctaattgataaacttttgacaaag 45921881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 462
Target Start/End: Complemental strand, 54091106 - 54090992
Alignment:
Q  348 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacat 447  Q
    ||||| || ||||||| |||||||||||||  | |||| |||||||||| ||| |||| | ||||||| || ||||||||| ||  |  | ||||| |||    
T  54091106 atgtcgttgtaagtcattctcaaattagtcattgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattaggtccctcgtcat 54091007  T
Q  448 gtgacaaaaacataa 462  Q
    |||||||||||||||    
T  54091006 gtgacaaaaacataa 54090992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 428
Target Start/End: Complemental strand, 13119442 - 13119381
Alignment:
Q  367 tcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||| | | ||||||||||||||||||| ||||| |||||||| | ||||||||||    
T  13119442 tcaaattagtttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttct 13119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 428
Target Start/End: Original strand, 13119191 - 13119270
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||||| ||||||||||||||   | || |  ||||||||||||| ||||| |||||||| ||||||||||||    
T  13119191 tgtctttgtaagtgaatctcaaattagttcttcacgcatttaatatttcaaaatagtcgctgtctttgtcaaaagtttct 13119270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 39051406 - 39051328
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||| ||| | | |||||||| | | ||||||||||||||| ||| ||||| |||||||| ||||||||||||    
T  39051406 tgtctttataaatcacttttaaattagt-tatgactctattaatattttaaaatagtcactgtctttgtcaaaagtttct 39051328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 40942734 - 40942675
Alignment:
Q  369 aaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||| | ||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  40942734 aaattagtctatgactatattaatattttaaattagtctttgtttttgtcaaaagtttct 40942675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 7402978 - 7403036
Alignment:
Q  368 caaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||| ||  ||||||||||||||| |||||||||||| ||||| ||||| ||||    
T  7402978 caaattagtttccgactctattaatattttaaattagtctctttctttatcaaatgttt 7403036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 13432832 - 13432756
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||| ||||||| |||||||||||||| |   |||||||| |||| ||| ||||||||| |||| ||||||||||    
T  13432832 tgtctttgtaagtcattctcaaattagtctatgcttctattaacattttaaa-tagtctctgactttgtcaaaagttt 13432756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 411
Target Start/End: Original strand, 3465369 - 3465449
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgt 411  Q
    ||||| |||||  |||||| ||||| ||| ||| ||| |||||||| | | ||| ||||||||||| ||||||||||||||    
T  3465369 aaccatcaaattcgttcatatctttgtaattcattcttaaattagtatatgactttattaatattttaaattagtctctgt 3465449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 348 - 495
Target Start/End: Original strand, 6511016 - 6511163
Alignment:
Q  348 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacat 447  Q
    |||||||||||||||| | |||||||||||| | | ||| ||||||||||||| |||||||  ||||| |||||| ||||| ||  | |||| ||  |||    
T  6511016 atgtctttataagtcattttcaaattagtctatgattctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaaatagattcttcatcat 6511115  T
Q  448 gtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaa 495  Q
    |||||||||||||||||||| ||||| |||| | |||||||| |||||    
T  6511116 gtgacaaaaacataaagacatggaccaaattgagaaacttttgacaaa 6511163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 22191386 - 22191461
Alignment:
Q  353 tttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||| | |||||||||||| |||||  |||||||||| ||| |||||| ||||||| ||||||||||||    
T  22191386 tttataagtcattttcaaattagtctataacttaattaatattttaaaatagtctttgtctttgtcaaaagtttct 22191461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 17658774 - 17658855
Alignment:
Q  347 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||| ||||||| | ||||||||||| | |||||||||||||||||||| |||||  ||||||| |||||| |||||    
T  17658774 catgtatttttaagtcactatcaaattagtccccaactctattaatatttcaaaatagtcattgtctttgtcaaaaatttct 17658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 17672942 - 17673002
Alignment:
Q  347 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 407  Q
    ||||| ||| ||||||| ||||||||||||||| || ||||||||||||||||| ||||||    
T  17672942 catgtatttttaagtcactctcaaattagtctccaattctattaatatttcaaaatagtct 17673002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 22191590 - 22191527
Alignment:
Q  352 ctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 415  Q
    |||| ||||||| ||||||||||||| || ||||||||||||||| ||| |||||| |||||||    
T  22191590 ctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtctatgtcttt 22191527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 496
Target Start/End: Complemental strand, 32502982 - 32502875
Alignment:
Q  389 taatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttt 488  Q
    |||||||||||| |||||| ||||||| |||||| ||| | ||  | ||  |||| ||||||||||||||||| |||||| || |||||| | |||| ||    
T  32502982 taatatttcaaaatagtctttgtctttgtcaaaattttttcaattaaatgtctcgtcatgtgacaaaaacatagagacaatgatctaattgagaaacatt 32502883  T
Q  489 taacaaag 496  Q
    ||||||||    
T  32502882 taacaaag 32502875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 32014041 - 32013984
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 422  Q
    |||||||||||||| | |||||||| |||||||||| ||||| |||||||| ||||||    
T  32014041 tctcaaattagtctatgactctattgatatttcaaaatagtcactgtctttgtcaaaa 32013984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 17627870 - 17627930
Alignment:
Q  347 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 407  Q
    ||||| ||| ||||||| | ||||||||||| | |||||||||||||||||||| ||||||    
T  17627870 catgtatttttaagtcactttcaaattagtcaccaactctattaatatttcaaaatagtct 17627930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 33940100 - 33940037
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||||  | ||| ||||||||||||||| ||||| |||| ||| ||||||||||||    
T  33940100 tctcaaattagtcgttgactttattaatatttcaaaatagtcactgtttttttcaaaagtttct 33940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 39760175 - 39760222
Alignment:
Q  381 aactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||||||||||| |||||| ||| ||| ||||||||||||    
T  39760175 aactctattaatatttcaaaatagtctatgtttttatcaaaagtttct 39760222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 17184764 - 17184834
Alignment:
Q  337 caaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 407  Q
    ||||| ||||||||||||| ||||  | | ||||| |||||||| ||||||||||||||| ||| ||||||    
T  17184764 caaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtct 17184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 35736709 - 35736778
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaa 400  Q
    ||||||||||| ||| ||||||||| ||| ||| ||||||| ||||| || |||||| |||||| |||||    
T  35736709 aaccaccaaattggtccatgtctttgtaattcactctcaaactagtcactgactctactaatatctcaaa 35736778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 2451214 - 2451166
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    ||||||| |||||||||||||| |||||||||||| |||  ||||||||    
T  2451214 taagtcattctcaaattagtctttaactctattaacattataaattagt 2451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 489
Target Start/End: Complemental strand, 32503117 - 32502985
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaa 456  Q
    ||||||| | |||||||||||||  |||||||| |||||| ||| |||||  ||||||| ||||||| |||| ||  |  | ||||| ||| ||| ||||    
T  32503117 taagtcattatcaaattagtctcacactctattgatattttaaaatagtcattgtctttgtcaaaagattctcaattaagtccctcgtcatatgataaaa 32503018  T
Q  457 acataaagacaaggacctaattaacaaactttt 489  Q
    ||||| |||||  || |||||| | ||||||||    
T  32503017 acatagagacagagatctaattgataaactttt 32502985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 36184815 - 36184738
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||| ||| ||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  36184815 tgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtcactgtctttgtcaaaagttt 36184738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 31065847 - 31065925
Alignment:
Q  350 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||| |||| |  |||||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||    
T  31065847 gtctttataagtgaatcactgattagtctctaactctattaatatttcaaaatagtcattgtctttgtcaaaagtttct 31065925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 11275869 - 11275790
Alignment:
Q  347 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||| ||| ||| |||||||||||||||| ||| ||||||||||| |||||||| ||| | ||| ||||||||||    
T  11275869 catgtctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagttt 11275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 33391593 - 33391514
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||||||| | ||||||||||||| ||  |||||| ||||||||||||||| || ||||| ||||||||||||    
T  33391593 tgtctttgtaagtcattatcaaattagtctcaaaaactattagtatttcaaattagtccctatctttatcaaaagtttct 33391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 20399100 - 20399019
Alignment:
Q  334 caccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 415  Q
    |||||||| ||| | | ||||| |||| || ||||||||||||| || |||||||||||||||||||||||||  |||||||    
T  20399100 caccaaattggtccctatctttgtaagacattctcaaattagtccctgactctattaatatttcaaattagtccttgtcttt 20399019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 31050968 - 31051046
Alignment:
Q  350 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||| | || | ||||||||||| |||||| |||||||||||| |||||   |||||| ||||||||||||    
T  31050968 gtctttataagtgattcactaattagtctctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttct 31051046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 987373 - 987328
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaatt 402  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||    
T  987373 taagtcactctcaaattagtctataactctattaatattttaaatt 987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 8840083 - 8840022
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||| ||||||| |  ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  8840083 tctcagattagtccccgactctattaatatttcaaaatagtccctgtctttgtcaaaagttt 8840022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 31046231 - 31046143
Alignment:
Q  337 caaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||| ||||||||| ||||| | ||||||||||  |||  ||||||||||||||| ||| |||||| || |||| ||||||||||    
T  31046231 caaatcggt-catgtctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtctatgcctttgtcaaaagttt 31046143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 8285301 - 8285238
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||||| || ||| ||||||||||| ||| |||||| | ||||| ||||||||||||    
T  8285301 tctcaaattagtccctgactatattaatattttaaaatagtctatatctttgtcaaaagtttct 8285238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 36184524 - 36184567
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaa 400  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||    
T  36184524 taagtcactctcaaattagtctataactttattaatatttcaaa 36184567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 27354306 - 27354351
Alignment:
Q  366 ctcaaattagtctctaactctattaatatttcaaattagtctctgt 411  Q
    |||||||||||| |||||| ||||||||||| ||| ||||||||||    
T  27354306 ctcaaattagtccctaactatattaatattttaaaatagtctctgt 27354351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 31066161 - 31066088
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 422  Q
    ||||||| ||||| | ||| ||||||| | |  ||||||||||||||| ||| |||||||||||||| ||||||    
T  31066161 tgtctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtctttatcaaaa 31066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 9530547 - 9530610
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtc 412  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  9530547 tgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtctctgtc 9530610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 19121854 - 19121936
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaa 431  Q
    ||||||| |||| || ||||||| ||||| |||||||||||||||||| ||| |||| ||| ||||| ||||||| |||||||    
T  19121854 tgtctttgtaagccactctcaaactagtcgctaactctattaatattttaaactagtttctatctttgtcaaaagcttctaaa 19121936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 428
Target Start/End: Original strand, 21969143 - 21969222
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||||| | | ||||| ||||| || ||||||||||||||| ||| ||  |||||||||| ||||||||||||    
T  21969143 tgtctttataagtgattttcaaaatagtcactgactctattaatattttaaaataaactctgtctttatcaaaagtttct 21969222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 3890080 - 3889971
Alignment:
Q  381 aactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaa 480  Q
    |||||||||||||||  ||| ||||   ||||||| |||||||||||| ||  |  | |||||   |||||||||||||| ||||||||||||||||| |    
T  3890080 aactctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattaggtccctcgttgtgtgacaaaaacatgaagacaaggacctaattga 3889981  T
Q  481 caaactttta 490  Q
     |||||||||    
T  3889980 gaaactttta 3889971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 19122062 - 19121985
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||||||| | |||||||||||| | ||||||||||||||||||| |||| | ||||||| | | ||||||||    
T  19122062 tctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttct 19121985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 418
Target Start/End: Original strand, 21394254 - 21394323
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctc 418  Q
    ||||||| |||| || |||||||||||||  ||||||||||||||||| ||| |||||||| ||| ||||    
T  21394254 tgtctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtctctctctctctc 21394323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 3889883 - 3889955
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaatta 403  Q
    |||||||||||  |||||||||||| ||| ||| |||||||||||||    |||||||||| |||||||||||    
T  3889883 aaccaccaaattagttcatgtctttgtaattcattctcaaattagtcaaccactctattaagatttcaaatta 3889955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 30747944 - 30747996
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaat 401  Q
    ||||||| ||||||| |||||||||| |||||||||||||| |||||| ||||    
T  30747944 tgtctttctaagtcactctcaaattaatctctaactctattgatattttaaat 30747996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 3960931 - 3960852
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||||| | | ||||| |||||| | ||||||||||||||| |||||||||  ||| ||| ||||||||||||    
T  3960931 tgtctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtccttgtgtttgtcaaaagtttct 3960852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 8446945 - 8447020
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||||| | | ||||||||||| || | ||||||||||||||||| |||||  ||||||| | ||||||||    
T  8446945 tctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgttaaaagttt 8447020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 8455749 - 8455824
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||||| | | ||||||||||| || | ||||||||||||||||| |||||  ||||||| | ||||||||    
T  8455749 tctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgttaaaagttt 8455824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 17333311 - 17333368
Alignment:
Q  366 ctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagt 424  Q
    |||||||||||| || ||||||||||||||||||| ||| ||| |||||| ||||||||    
T  17333311 ctcaaattagtccctgactctattaatatttcaaactagcctc-gtctttgtcaaaagt 17333368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 17437558 - 17437604
Alignment:
Q  382 actctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||||| |||| ||||||| ||||||| ||||||||||||    
T  17437558 actctattaatatatcaatttagtctttgtctttatcaaaagtttct 17437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 17437695 - 17437745
Alignment:
Q  446 atgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 496  Q
    |||||||||||||||| |||||| || |||||| | |||||||||||||||    
T  17437695 atgtgacaaaaacatagagacaaagatctaattgagaaacttttaacaaag 17437745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 23765895 - 23765853
Alignment:
Q  445 catgtgacaaaaacataaagacaaggacctaattaacaaactt 487  Q
    |||||||||||||||||||||||| ||||||||| | ||||||    
T  23765895 catgtgacaaaaacataaagacaatgacctaattgaaaaactt 23765853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 21969351 - 21969306
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatattt 396  Q
    ||||| ||||| |||||||||||||||||| |||| ||||||||||    
T  21969351 tctttgtaagtgaatctcaaattagtctctgactcaattaatattt 21969306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 24794227 - 24794190
Alignment:
Q  369 aaattagtctctaactctattaatatttcaaattagtc 406  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  24794227 aaattagtctctaactttattaatgtttcaaattagtc 24794190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 478
Target Start/End: Original strand, 15965646 - 15965738
Alignment:
Q  386 tattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaatt 478  Q
    ||||||||||| ||| |||||| | || || |||||||||| | ||  || | | ||| ||||||||||||||||||||||| | ||||||||    
T  15965646 tattaatattttaaactagtctatatccttgtcaaaagtttttcaattacgtccttcgtcatgtgacaaaaacataaagacatgaacctaatt 15965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 55447261 - 55447182
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||||| | |||||||| ||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  55447261 tgtctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttct 55447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 428
Target Start/End: Original strand, 39840659 - 39840738
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||||| | |||||||||||||||| ||||||||||||||||||| |||||  ||| ||| ||||||||||||    
T  39840659 tgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttct 39840738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 428
Target Start/End: Original strand, 38181332 - 38181429
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||| |||| ||||||||||||||||||  | |||||||||  || |  ||||||||||||||||||| |||||||  ||||| ||||||||||||    
T  38181332 aaccactaaattggttcatgtctttataagctactctcaaatttatcacggactctattaatatttcaaactagtctccatctttatcaaaagtttct 38181429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 478
Target Start/End: Complemental strand, 33075349 - 33075219
Alignment:
Q  348 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacat 447  Q
    |||||||||||||||| |||||||||| ||  ||| ||||||||||||| |||||||||  ||| ||| |||||| ||| | ||  | ||  |||| ||     
T  33075349 atgtctttataagtcactctcaaattaatcattaaatctattaatattttaaattagtcattgtttttgtcaaaaatttatcaattatatctctcgtcac 33075250  T
Q  448 gtgacaaaaacataaagacaaggacctaatt 478  Q
     ||||||||| |||||||||| |||||||||    
T  33075249 atgacaaaaatataaagacaatgacctaatt 33075219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 27812204 - 27812261
Alignment:
Q  348 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    |||||||| ||||||| ||| |||||||||||| | ||||||||||||||||||||||    
T  27812204 atgtctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagt 27812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 20124322 - 20124246
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||| ||||||| | |||||||||||||| ||||||| ||||||||||| |||||  ||| ||| ||||||||||    
T  20124322 tgtctttgtaagtcatt-tcaaattagtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagttt 20124246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 496
Target Start/End: Complemental strand, 29504963 - 29504832
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaag 464  Q
    |||||||||||||   |||||||||||||||| ||| |||| | | ||||| | ||||||||||  |     | ||||| |||||||||||| |||||||    
T  29504963 tctcaaattagtcctcaactctattaatattttaaactagtttttatctttgttaaaagtttctcgatttggtccctcgtcatgtgacaaaagcataaag 29504864  T
Q  465 acaaggacctaattaacaaacttttaacaaag 496  Q
    |||  ||||||||| | |||||||||| ||||    
T  29504863 acattgacctaattgaaaaacttttaataaag 29504832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 45965875 - 45965804
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| |||||||||||| | | ||||||||||||||||||| ||||   | ||||| ||||||||||||    
T  45965875 taagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttct 45965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 46164148 - 46164085
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||||| || ||||||||||||  ||||| | |||||||||||| ||||| ||||||    
T  46164148 tctcaaattagtccctgactctattaataactcaaaatggtctctgtctttgtcaaacgtttct 46164085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 40472831 - 40472909
Alignment:
Q  350 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||| ||||| | |||||||||||||| | |||||||||| |||| ||| |||| | | ||||| ||||||||||||    
T  40472831 gtctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttct 40472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 40861029 - 40860967
Alignment:
Q  350 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtc 412  Q
    |||||| ||||||| ||| || ||||||||| | | |||||||||||||||||||||| ||||    
T  40861029 gtctttgtaagtcattcttaatttagtctctgattttattaatatttcaaattagtctttgtc 40860967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 31300428 - 31300371
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 422  Q
    |||||||||||||| |||||||||| |||||| |||||| | | ||||||| ||||||    
T  31300428 tctcaaattagtctataactctatttatattttaaattaatttttgtctttgtcaaaa 31300371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 39840969 - 39840892
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||||| | ||||||||||||  |||||| ||||||||||||||| ||||| || ||||| | |||| |||||    
T  39840969 tctttgtaagtgattctcaaattagttcctaactttattaatatttcaaaatagtccctatctttgttaaaattttct 39840892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 42045771 - 42045848
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||| ||||| |  ||||||||| ||  ||||||||||||||||||||| |||||  ||||| | ||||||||||    
T  42045771 tgtctttgtaagtgatcctcaaattaatccataactctattaatatttcaaaatagtcattgtctatgtcaaaagttt 42045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 1431532 - 1431476
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaa 421  Q
    |||||||||||||   || ||||||||||| ||||||||||| |||||||| |||||    
T  1431532 tctcaaattagtcctcaattctattaatatctcaaattagtcactgtctttgtcaaa 1431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 3910247 - 3910287
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    ||||||||||||| |||||||||||||||||| ||| ||||    
T  3910247 tctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 48338613 - 48338573
Alignment:
Q  367 tcaaattagtctctaactctattaatatttcaaattagtct 407  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  48338613 tcaaattagtctctgactctattaatatatcaaaatagtct 48338573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 49782277 - 49782221
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    |||||||||||||   | |||||||||||  ||||||||||||||||||||| ||||    
T  49782277 tgtctttataagtgtttttcaaattagtccataactctattaatatttcaaaatagt 49782221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 28504711 - 28504784
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 422  Q
    ||||||| ||||||| |||||||||||||| | ||||||||||||||||||| |||||||||| ||| ||||||    
T  28504711 tgtctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtctctgtttttgtcaaaa 28504784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 46410920 - 46410826
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtt 425  Q
    ||||||||||| |||   ||||||| ||||| | |||||| ||||||| | |||||| |||||||||||| |||||||||||||| |||||||||    
T  46410920 aaccaccaaattggtcattgtctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 10595581 - 10595501
Alignment:
Q  348 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||| |||| || | |||||||| ||  |||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  10595581 atgtctttgtaagacattgtcaaattaatccataactctattaatatttcaaattagtcattgtctttgtcaaaagtttct 10595501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 496
Target Start/End: Original strand, 6219625 - 6219772
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatg 448  Q
    ||||||||||||||| ||| ||| |||||| | | | ||||||||||| ||||||||| |||||||| |||||| ||||| ||  |  | ||||   |||    
T  6219625 tgtctttataagtcattcttaaactagtctatgattttattaatattttaaattagtcactgtctttgtcaaaaatttctcaattaggtccctcattatg 6219724  T
Q  449 tgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 496  Q
    ||||||||||||||||||   ||||||||| | | |||||| ||||||    
T  6219725 tgacaaaaacataaagacggtgacctaattgagatacttttgacaaag 6219772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 7790481 - 7790411
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  7790481 taagtcattctcaaattagt-tatgactctattaatatttcaaattagtttctatctttatcaaaagtttct 7790411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 8792967 - 8793018
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaa 400  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  8792967 tgtctttgtaagtcactctcaaattagtctccaactctattaatatttcaaa 8793018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 10377643 - 10377568
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtc 406  Q
    ||||||||| | ||| | ||||||| ||||||| | |||||||||||| | |||||||||||||||||||||||||    
T  10377643 aaccaccaagttggtccctgtctttgtaagtcattatcaaattagtctttgactctattaatatttcaaattagtc 10377568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 6219847 - 6219766
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtc 412  Q
    |||||| |||| | ||||||||||| |||| || ||||||||  |||||||||||||||||||||| ||| |||||| ||||    
T  6219847 aaccactaaattgcttcatgtctttgtaagccattctcaaatctgtctctaactctattaatattttaaactagtctttgtc 6219766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 27293283 - 27293336
Alignment:
Q  352 ctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    |||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagt 27293336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 27562671 - 27562748
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| || |||| |||| |||||| |  |||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  27562671 tctttgtatgtcattctcgaattagaccataactctattaatatttcaaattaatttctgtctttgtcaaaagtttct 27562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 38576576 - 38576648
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaag 423  Q
    ||||| ||| ||| |||||||||||||| | | |||||||||||||||||  ||||||||||||| |||||||    
T  38576576 tctttgtaaatcattctcaaattagtctttgattctattaatatttcaaaccagtctctgtctttatcaaaag 38576648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 428
Target Start/End: Original strand, 23399510 - 23399607
Alignment:
Q  334 caccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaa---tatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||| | ||| ||||||||| ||||| ||| |||||||||||  ||||||||||||   |||||||||||||||  ||| ||| ||||||||||||    
T  23399510 caccaatttggtgcatgtctttctaagttaatatcaaattagtccttaactctattaatactatttcaaattagtcattgtttttgtcaaaagtttct 23399607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 15395209 - 15395259
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 415  Q
    |||||||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  15395209 tctcaaattagtctatgactctattaatattttaaaatagtctctgtcttt 15395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 38783894 - 38783971
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||||||| | |||||||||||  | ||||||||||||||| ||| |||||  ||||||| ||||||||||||    
T  38783894 tctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtcattgtctttgtcaaaagtttct 38783971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 34835619 - 34835667
Alignment:
Q  380 taactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||| ||||||||||| |||||||||||||| ||||||||||||    
T  34835619 taactttatcaatatttcaaactagtctctgtctttgtcaaaagtttct 34835667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 40650104 - 40650039
Alignment:
Q  334 caccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaa 400  Q
    |||||| | ||| ||||||||| ||||| | ||||||||||||| ||||||| ||||||||||||||    
T  40650104 caccaatttggtccatgtctttgtaagtgattctcaaattagtc-ctaactccattaatatttcaaa 40650039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 4066923 - 4066984
Alignment:
Q  367 tcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||| || |||||||||||| |||||| | ||| |||||||| ||||||||||||    
T  4066923 tcaaattggtccctgactctattaataattcaaaatggtcactgtctttgtcaaaagtttct 4066984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 27293503 - 27293426
Alignment:
Q  337 caaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctt 414  Q
    ||||| |||| || ||||| ||||||| ||| |||||||||| | ||| ||||||||||||||| ||| | |||||||    
T  27293503 caaattggtttatatctttgtaagtcattcttaaattagtctatgactttattaatatttcaaactagcccctgtctt 27293426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 34835777 - 34835740
Alignment:
Q  369 aaattagtctctaactctattaatatttcaaattagtc 406  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  34835777 aaattagtttctaactctattaatattttaaattagtc 34835740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 27293394 - 27293350
Alignment:
Q  445 catgtgacaaaaacataaagacaaggacctaattaacaaactttt 489  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||    
T  27293394 catgttacaaaaacataaagacaaagacctaattgagaaactttt 27293350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 46410682 - 46410722
Alignment:
Q  386 tattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||||||||||| ||||||| |||||| ||||||||||    
T  46410682 tattaatatttcaaaatagtctcagtctttgtcaaaagttt 46410722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 122604 - 122547
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 422  Q
    |||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||    
T  122604 tctcaaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaaa 122547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 428
Target Start/End: Original strand, 10028633 - 10028730
Alignment:
Q  331 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||| | |  |||| ||| ||||||| ||||||||||||| || |||||||||||||||||||||||||| | || ||  |||||||||||    
T  10028633 aaccaccaaattgatcaatgtatttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttct 10028730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 10028741 - 10028822
Alignment:
Q  347 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||| ||||||| ||||||||||||| |  |||||||||||||||||||| ||||||| |||||  |||||||||||    
T  10028741 catgtatttgtaagtcattctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttct 10028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 495
Target Start/End: Original strand, 33229497 - 33229635
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtg 450  Q
    ||||| ||||||  ||||||||||||| | ||| |||||||||||||||| |||||| ||||      |||||||||| ||  |  | ||||| ||||||    
T  33229497 tctttgtaagtcgctctcaaattagtccccaaccctattaatatttcaaactagtctttgtc------aaaagtttctcaattaggtccctcgtcatgtg 33229590  T
Q  451 acaaaaacataaagacaaggacctaattaacaaacttttaacaaa 495  Q
    ||||||||||||||||| ||| |||||| | |||||||| |||||    
T  33229591 acaaaaacataaagacagggatctaattgagaaacttttgacaaa 33229635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 21136587 - 21136664
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    |||||||  |||||| |||||||||||||| | ||||||||||||||||||| |||||  | ||||| ||||||||||    
T  21136587 tgtcttttaaagtcattctcaaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagttt 21136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 10028953 - 10028876
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||||| || |||| |||||||||||||| | ||| ||||||||||||||| |||||  ||||||| ||||| ||||    
T  10028953 tgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaactagtcgttgtctttttcaaaggttt 10028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 23961725 - 23961644
Alignment:
Q  346 tcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttc 427  Q
    |||||||||| ||||||| | |||||| ||||||| | || |||||||||||||| ||||| ||  |||| |||||||||||    
T  23961725 tcatgtctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtccctaactttatcaaaagtttc 23961644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 41687901 - 41687849
Alignment:
Q  353 tttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    ||||||||||| |||||||||||| | | ||||||||||||||||||| ||||    
T  41687901 tttataagtcactctcaaattagtttgtgactctattaatatttcaaactagt 41687849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 407
Target Start/End: Original strand, 5840352 - 5840411
Alignment:
Q  348 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 407  Q
    |||||||| ||||| | |||||||||||||||| | ||||||||||||| ||| ||||||    
T  5840352 atgtctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 5840411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 23768775 - 23768825
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 415  Q
    |||||||||||||| ||| | ||||||||||| ||| ||||||||||||||    
T  23768775 tctcaaattagtctataattttattaatattttaaaatagtctctgtcttt 23768825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 10028854 - 10028813
Alignment:
Q  448 gtgacaaaaacataaagacaaggacctaattaacaaactttt 489  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  10028854 gtgacaaaaacataaagacatggacctaattgagaaactttt 10028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 5846999 - 5846951
Alignment:
Q  448 gtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 496  Q
    |||||||||||||| |||||| ||||||||| | ||||||| |||||||    
T  5846999 gtgacaaaaacatagagacaatgacctaattgaaaaactttaaacaaag 5846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 36478611 - 36478557
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 405  Q
    |||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||    
T  36478611 tctttataagtcaatctcaaattagtttataactttatcaatatttcaaattagt 36478557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 426
Target Start/End: Complemental strand, 21249057 - 21248998
Alignment:
Q  367 tcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    |||||||||| ||||||| ||||||||||| |||||||||||  ||||| ||||||||||    
T  21249057 tcaaattagtttctaactttattaatattttaaattagtctccatctttgtcaaaagttt 21248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 41008993 - 41008922
Alignment:
Q  357 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| | |||||||| ||||| ||||||||||||||| ||| |||||||| ||||| | ||||||||||    
T  41008993 taagtcattttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttct 41008922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 428
Target Start/End: Original strand, 42709917 - 42709996
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||| ||||| | |||||||| ||||||  ||||||||||||||| ||| |||||  ||||||| ||||||||||||    
T  42709917 tgtctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttct 42709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 495
Target Start/End: Complemental strand, 10525114 - 10524976
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtg 450  Q
    ||||| ||||||| ||||||||| ||| |  || |||||||||||||||| |||||| ||||      |||||||||| ||  |  | ||||| ||||||    
T  10525114 tctttgtaagtcactctcaaatttgtccccgaccctattaatatttcaaactagtctttgtc------aaaagtttctcaattaggtccctcgtcatgtg 10525021  T
Q  451 acaaaaacataaagacaaggacctaattaacaaacttttaacaaa 495  Q
    ||||||||||||||| | ||| |||||| | |||||||| |||||    
T  10525020 acaaaaacataaagatagggatctaattgagaaacttttgacaaa 10524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 30935416 - 30935271
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtg 450  Q
    ||||| ||||||| |||||||||||||||  ||| ||||||||||||||| || || || ||||| ||||||     | ||  |  | ||||| ||||||    
T  30935416 tctttgtaagtcactctcaaattagtctccgactttattaatatttcaaactaatccctatctttgtcaaaaaaaattcaattaggtccctcgtcatgtg 30935317  T
Q  451 acaaaaacataaagacaaggacctaattaacaaacttttaacaaag 496  Q
    ||||||||||||||| ||||| |||| | | |||||||| ||||||    
T  30935316 acaaaaacataaagataaggatctaagtgaaaaacttttgacaaag 30935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 6086 - 6026
Alignment:
Q  368 caaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||| | ||| | |||||||||||||||||||| ||||||| ||||| ||||||    
T  6086 caaattagtctttgactttgttaatatttcaaattagtctttgtctttatcaaacgtttct 6026  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 3248532 - 3248445
Alignment:
Q  334 caccaaatcggttcatgtctttataagtcaa-tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaa 421  Q
    |||||||| ||| | ||||||||||| |||| ||| |||||||||| | ||| ||||||||| ||||| |||||||||||||| |||||    
T  3248532 caccaaattggtccctgtctttataa-tcaactcttaaattagtctttgactatattaatatgtcaaaatagtctctgtctttgtcaaa 3248445  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Original strand, 3248336 - 3248399
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||| ||| ||| ||||||||| ||||| |||| ||||||||| ||||| ||||||    
T  3248336 tctcaaattagtatctgactttattaatatctcaaaatagtttctgtctttgtcaaatgtttct 3248399  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 26752084 - 26752017
Alignment:
Q  359 agtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 426  Q
    ||||| |||||||||||||||| ||| | ||| ||||| ||| |||||| ||||||| ||||||||||    
T  26752084 agtcactctcaaattagtctctgactttgttattattttaaaatagtctttgtctttgtcaaaagttt 26752017  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 476
Target Start/End: Complemental strand, 12428006 - 12427916
Alignment:
Q  386 tattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaa 476  Q
    ||||||||||||||| |||||  ||||||| |||||||||| | ||     |  |||| |||||||||||||||||||||||| |||||||    
T  12428006 tattaatatttcaaactagtccatgtctttgtcaaaagtttttcaatttggtctctcgtcatgtgacaaaaacataaagacaatgacctaa 12427916  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 12427833 - 12427890
Alignment:
Q  349 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtc 406  Q
    ||||||| ||||||| ||||||||||||   | ||||||||||||||| |||||||||    
T  12427833 tgtctttgtaagtcattctcaaattagttcatgactctattaatattttaaattagtc 12427890  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 16830294 - 16830371
Alignment:
Q  351 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||| ||||||| |||||||||||| || || |||||||||||| |||| ||||   ||||||| ||| ||||||||    
T  16830294 tctttgtaagtcactctcaaattagtgtcaaattctattaatattccaaactagtgcatgtctttgtcataagtttct 16830371  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 32047272 - 32047328
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaa 421  Q
    ||||||||| |||||| ||||||||||||  ||||| | |||||||||||| |||||    
T  32047272 tctcaaattggtctctgactctattaataactcaaaatggtctctgtctttgtcaaa 32047328  T

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Target: scaffold0528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 1973 - 1895
Alignment:
Q  350 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||| | || | ||||||||||| |||||| |||||||||||| |||||   |||||| ||||||||||||    
T  1973 gtctttataagtgattcactaattagtctctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttct 1895  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 6283 - 6220
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    |||||||||||||| | ||||||||||||||||||| |||| | || |||| | ||||||||||    
T  6283 tctcaaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttct 6220  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Original strand, 17116 - 17179
Alignment:
Q  365 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 428  Q
    ||||||||||||| | |||||||||||||||| ||| ||||  |||||||| ||||| ||||||    
T  17116 tctcaaattagtcccaaactctattaatattttaaactagttcctgtctttgtcaaacgtttct 17179  T

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