View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_1 (Length: 735)
Name: NF17112_low_1
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 326 - 718
Target Start/End: Complemental strand, 29134026 - 29133628
Alignment:
| Q |
326 |
caacagttccaaatgtgctttacttatttttgtttgtgaagtggaaactggttttgaatccaagtatgatcattttgtgatgcagacaagtttgaggtcc |
425 |
Q |
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| T |
29134026 |
caacagttccaaatgtgctttacttatttttgtttgtgaagtggaaactgattttgaatccaagtatgatcattttgtgatgcagacaagtttgaggtcc |
29133927 |
T |
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| Q |
426 |
ttccggaaa-gcattatacaaataaggtcataaaatattttgcactggaaaatgacttttagtatcttctctaaaacaatagagaaatttgttgtactct |
524 |
Q |
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| T |
29133926 |
ttcgggaaaagcattatacaaataaggtcataaaatattttgcactggaaaatgacatttagtattttctctaaaacaatagagaaatttattgtactct |
29133827 |
T |
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| Q |
525 |
gttctactaaattccagatcttcgttggcata-----atttacgtagccataacactatcaattaggtagcaactggaaaagcaaagtatgttttcttac |
619 |
Q |
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| T |
29133826 |
gttctactaaattccagatcttcattggcatacacttatttacgtagccataacactatcaattaggtagcaactggaaaagcaaagtatgttttcttac |
29133727 |
T |
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| Q |
620 |
aatcaaatcctgagataacttgtaaagcttcaactctcaagagtgatagcgtttaaggaactgataacactacgtgcaaaaatgtttctaaagagagat |
718 |
Q |
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| T |
29133726 |
aatcaaatcctgagataacttgtaaagcctcaactctcaagagtgatagcgtttaaggaactgataacactacgtgcaaaaatgtttctaaagagagat |
29133628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 29134438 - 29134122
Alignment:
| Q |
11 |
aatatcagttataacggatggagatttagctgtgaagaatgcagtacatggagtatttcctaatgcccgtcatatgttatgtgcatggcatttgctacac |
110 |
Q |
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| T |
29134438 |
aatatcagttataacggatggagatttagccgtgaagaatgcaatacatagagtatttcctaatgcccgtcatatgttatgtgcatggcatttgctacac |
29134339 |
T |
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| Q |
111 |
aatgcaattagcattgttgggattcctgatttaatgtcgtatttgaagaagtgcatgttgaatgacattgaagttagtcaatttgaagaaacatggaatg |
210 |
Q |
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| T |
29134338 |
aatgcaattagcattgttgggattcctgatttaatgtcgtatttgaagaagtgcatgttggatgacattgaagttagtcaatttgaagaaacatggaatg |
29134239 |
T |
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| Q |
211 |
aaatggttacgaagtttggattggaggaaaacaattggataaatgaactgaatgacaaaagatagttatgggctgttactctgacacgaaggaacttttt |
310 |
Q |
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| T |
29134238 |
aaatggttacgaagtttggattggaggaaaacaattggataaatgaactgtatgacaaaagatagttatgggctacaactctgacatgaaggaacttttt |
29134139 |
T |
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| Q |
311 |
tgcaaggataaggacca |
327 |
Q |
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| T |
29134138 |
tgcaaggataaggacca |
29134122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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