View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_10 (Length: 523)
Name: NF17112_low_10
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 38974486 - 38974065
Alignment:
| Q |
19 |
gaaaatggattcaccttatcaagatgagagtaatcccatccatccaacttgtggactgtggatcgtagttatttagaataaaatgatggatgtaatttcc |
118 |
Q |
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| T |
38974486 |
gaaaatggattcaccttatcaagatgagagtaagcccatccatccaacttgtggactgtggatcgtagttatttagaataaaatgatggatgtaatttcc |
38974387 |
T |
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| Q |
119 |
ttttgtttttatataattaatcttccttttgaattttgatatgccacactacggcatggatt----attttgttacaataaaatataatggcctaaaatt |
214 |
Q |
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| T |
38974386 |
ttttgtttttatataattaatcttccttttgaattttgatatgccacactacggcatggattatttattttgttgcaataaaatataatggcccaaaatt |
38974287 |
T |
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| Q |
215 |
ggaatcgagctaaataggctaagnnnnnnnggtttatgac-aaaataatcgactcaaaatttcacaaactatgtacggagatccttgtatactactnnnn |
313 |
Q |
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| T |
38974286 |
ggaatcgagctaaataggccaagtttttttggtttatgacaaaaataattgactcaaaatttcacaaagtatgtacggagatccttgtatactactaaaa |
38974187 |
T |
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| Q |
314 |
nnnttgtctcaactttcaatcgttccttgatcccacaatattaaccacattttatatgtcatgataagtttaaccttagcatcacttgttgtgaaagtag |
413 |
Q |
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| T |
38974186 |
aaattgtctcaactttcaatcgttccttgatcccacgatactaaccacattttatatgtcatgacaagtttaaccttagcatcacttgttgtgaaagtag |
38974087 |
T |
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| Q |
414 |
atccacatttaaatgttgtttt |
435 |
Q |
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| T |
38974086 |
atccacagttaaatgttgtttt |
38974065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 441 - 501
Target Start/End: Complemental strand, 38973577 - 38973517
Alignment:
| Q |
441 |
cttatatcactctttgtgggcccttaccaatccgtcaaaccaaccccaccaactgtaagta |
501 |
Q |
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| T |
38973577 |
cttatatcactctttgtgggcccttaccaatccgtcaaaccaaccccaccaactgtaagta |
38973517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 502
Target Start/End: Original strand, 50709346 - 50709467
Alignment:
| Q |
383 |
ttaaccttagcatcacttgttgtgaaagtagatccacatttaaatgttgttttcactgcttatatcac--tctttgtgggcccttaccaatccgtcaaac |
480 |
Q |
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| T |
50709346 |
ttaaccttagcaccgcttgttttgaaagtagatccaaatttaaatgttgttttaactgcttgcatcactgtgtttgtcggatgttaccgatccgttaaac |
50709445 |
T |
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| Q |
481 |
caaccccaccaactgtaagtaa |
502 |
Q |
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| T |
50709446 |
caaccgcaccaacggtatgtaa |
50709467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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