View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17112_low_12 (Length: 510)

Name: NF17112_low_12
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17112_low_12
NF17112_low_12
[»] chr5 (10 HSPs)
chr5 (1-471)||(37077626-37078096)
chr5 (227-350)||(973098-973221)
chr5 (386-434)||(7113630-7113678)
chr5 (391-460)||(972813-972883)
chr5 (261-334)||(2243315-2243388)
chr5 (393-431)||(2243339-2243377)
chr5 (471-501)||(37077557-37077587)
chr5 (393-431)||(41264387-41264425)
chr5 (390-431)||(973125-973166)
chr5 (288-337)||(7215322-7215371)
[»] chr1 (16 HSPs)
chr1 (390-449)||(52432656-52432716)
chr1 (390-435)||(46080981-46081026)
chr1 (288-336)||(5500843-5500891)
chr1 (390-460)||(2534436-2534507)
chr1 (402-456)||(3367746-3367801)
chr1 (302-337)||(11426631-11426666)
chr1 (392-435)||(42819631-42819674)
chr1 (409-459)||(45136757-45136808)
chr1 (385-435)||(10775173-10775223)
chr1 (288-334)||(52432836-52432882)
chr1 (288-345)||(10775155-10775212)
chr1 (391-459)||(34601630-34601699)
chr1 (288-337)||(45967852-45967901)
chr1 (288-337)||(46080971-46081020)
chr1 (391-449)||(38839682-38839739)
chr1 (298-342)||(42819616-42819660)
[»] chr2 (8 HSPs)
chr2 (391-457)||(2248957-2249024)
chr2 (288-334)||(16863459-16863505)
chr2 (390-459)||(38576957-38577027)
chr2 (391-447)||(16863453-16863510)
chr2 (390-456)||(16576236-16576303)
chr2 (261-337)||(16576248-16576324)
chr2 (391-457)||(34176630-34176697)
chr2 (235-337)||(38576750-38576843)
[»] chr6 (9 HSPs)
chr6 (395-458)||(20067902-20067966)
chr6 (294-345)||(32342592-32342643)
chr6 (386-425)||(32047194-32047233)
chr6 (386-435)||(32342610-32342659)
chr6 (286-334)||(20206479-20206527)
chr6 (286-334)||(22100502-22100550)
chr6 (396-445)||(20206481-20206531)
chr6 (396-445)||(22100504-22100554)
chr6 (386-431)||(7556132-7556177)
[»] chr4 (5 HSPs)
chr4 (224-337)||(15131537-15131650)
chr4 (288-350)||(20512694-20512756)
chr4 (286-336)||(25234224-25234274)
chr4 (391-461)||(20512848-20512919)
chr4 (390-434)||(15131595-15131639)
[»] chr3 (5 HSPs)
chr3 (393-463)||(7641829-7641900)
chr3 (288-337)||(54437806-54437855)
chr3 (391-424)||(45228345-45228378)
chr3 (393-425)||(54437657-54437689)
chr3 (391-435)||(54437816-54437860)
[»] chr8 (5 HSPs)
chr8 (390-434)||(32166655-32166699)
chr8 (224-316)||(33897758-33897850)
chr8 (390-456)||(6630559-6630626)
chr8 (391-444)||(31475039-31475092)
chr8 (288-337)||(32166661-32166710)
[»] chr7 (4 HSPs)
chr7 (224-337)||(34891533-34891646)
chr7 (288-337)||(29152353-29152402)
chr7 (390-431)||(34891547-34891588)
chr7 (391-435)||(7463858-7463902)
[»] scaffold1743 (1 HSPs)
scaffold1743 (390-458)||(770-838)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 37078096 - 37077626
Alignment:
Q  1 atttgcattagaggagagagactgaataaaagatggagggnnnnnnnnnnnnnnnngtgtaaccatttgcgtctgttttgtcactaactcaatccacggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
T  37078096 atttgcattagaggagagagactgaataaaagatggagggaaaaaaggaaaaaaaagtgtaaccatttgcgtctgttttgtcactaactcaatccacggt 37077997  T
Q  101 taaaataaacgtggtaatttcatcgtgtggttaaaactggtttattgggattcaaaatgcacgcacccataattacatgtctaagttgctacttccaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077996 taaaataaacgtggtaatttcatcgtgtggttaaaactggtttattgggattcaaaatgcacgcacccataattacatgtctaagttgctacttccaaaa 37077897  T
Q  201 ttgagagtaattttctcctaatgataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  37077896 ttgagagtaattttctcctaatgataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgaaaaaaattaagaaatttgatg 37077797  T
Q  301 tttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatttaccccaaataataaatatgattcaattataaatcgaatgagatgaagaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077796 tttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatttaccccaaataataaatatgattcaattataaatcgaatgagatgaagaa 37077697  T
Q  401 gtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatgaaaatctctttaa 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077696 gtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatgaaaatctctttaa 37077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 973221 - 973098
Alignment:
Q  227 ataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgat 326  Q
    ||||||| |||||||||||| ||||||||| ||  ||||||||||||||||        | ||||||||| ||||||||||||| |||||| ||||| ||    
T  973221 ataaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaat 973122  T
Q  327 tgtaagaaaaagctaaaatacatt 350  Q
    ||||||||||| | || |||||||    
T  973121 tgtaagaaaaaaccaacatacatt 973098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 7113630 - 7113678
Alignment:
Q  386 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgat 434  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7113630 gaatgagatgaagaagtttaatattcttgagatgaaaatgataattgat 7113678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 972883 - 972813
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 460  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||| | | ||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaa 972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 2243315 - 2243388
Alignment:
Q  261 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 334  Q
    ||||||||||||||||||       | ||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  2243315 gagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 431
Target Start/End: Original strand, 2243339 - 2243377
Alignment:
Q  393 atgaagaagtttaatgttcttgagatgaaaatgataact 431  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2243339 atgaagaagtttgatgttcttgagatgaaaatggtaact 2243377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 501
Target Start/End: Complemental strand, 37077587 - 37077557
Alignment:
Q  471 agaaaaaaccttcaagaacactaagaataat 501  Q
    |||||||||||||||||||||||||||||||    
T  37077587 agaaaaaaccttcaagaacactaagaataat 37077557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 431
Target Start/End: Complemental strand, 41264425 - 41264387
Alignment:
Q  393 atgaagaagtttaatgttcttgagatgaaaatgataact 431  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  41264425 atgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 973166 - 973125
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataact 431  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||    
T  973166 gagatgaagaaatttaatgtttttgagataaaaatgataact 973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||| ||||||||| |||||||||||||| ||  |||||||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 52432716 - 52432656
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 449  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  52432716 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatg 52432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 46081026 - 46080981
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 435  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  46081026 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgatt 46080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 5500843 - 5500891
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaa 336  Q
    ||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  5500843 aagaaatttgatgtttttgagataaaaatggtaactgattatacgaaaa 5500891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 460
Target Start/End: Original strand, 2534436 - 2534507
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 460  Q
    ||||||||||||||| ||||| ||||||||||| || ||| | | ||||| |||||||||| ||||||||||    
T  2534436 gagatgaagaagtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaatgaa 2534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 3367801 - 3367746
Alignment:
Q  402 tttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaa 456  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||    
T  3367801 tttaatattcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaa 3367746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 11426631 - 11426666
Alignment:
Q  302 ttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    |||||||||||||||| |||||||||||||||||||    
T  11426631 ttttgagatgaaaatggtaactgattgtaagaaaaa 11426666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 42819674 - 42819631
Alignment:
Q  392 gatgaagaagtttaatgttcttgagatgaaaatgataactgatt 435  Q
    |||||| |||||| |||||||||||||||||||||||| |||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgatt 42819631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 45136757 - 45136808
Alignment:
Q  409 ttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 459  Q
    |||||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaatga 45136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 10775223 - 10775173
Alignment:
Q  385 cgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 435  Q
    |||| ||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  10775223 cgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgatt 10775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 52432882 - 52432836
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 334  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||    
T  52432882 aagaagtttgatgtttttgagaagaaaatgataactaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 10775212 - 10775155
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaat 345  Q
    ||||| ||||||||| || ||||||||||| ||| ||||| ||||||||| |||||||    
T  10775212 aagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaactaaaat 10775155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 459
Target Start/End: Original strand, 34601630 - 34601699
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaatga 459  Q
    ||||||| | |||| ||||| ||||||||||||| |||||| ||  |||||||||||||| |||||||||    
T  34601630 agatgaaaacgtttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatga 34601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 45967852 - 45967901
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||||||| || ||||||| ||||||||| |||| ||||||||||||||    
T  45967852 aagaaatttaatatttttgaaatgaaaatgataacagattgtaagaaaaa 45967901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 46081020 - 46080971
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||| ||| ||||| |||||||||||||| ||| |||||||||||||||    
T  46081020 aagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 449
Target Start/End: Original strand, 38839682 - 38839739
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 449  Q
    ||||||||| |||| |||||||||||||||||||  ||||| ||| ||||||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatg 38839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 42819660 - 42819616
Alignment:
Q  298 atgtttttgagatgaaaatgctaactgattgtaagaaaaagctaa 342  Q
    ||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  42819660 atgttcttgagatgaaaatgataattgattgtaagaaaaaactaa 42819616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 457
Target Start/End: Original strand, 2248957 - 2249024
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 457  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  2248957 agatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaat 2249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 16863505 - 16863459
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 334  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  16863505 aagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 38576957 - 38577027
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 459  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||| ||| |||||| ||| |||||||||    
T  38576957 gagatgaagaactttaatgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatga 38577027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 16863510 - 16863453
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaaga 447  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  16863510 agatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga 16863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 16576303 - 16576236
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaa 456  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||| |||| || ||||||    
T  16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaa 16576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 16576324 - 16576248
Alignment:
Q  261 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||||||||||||||||       | ||||| ||||||||| |||||| ||||||| ||| |||||||||||||||    
T  16576324 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 34176697 - 34176630
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 457  Q
    |||||||||||||| || ||||| ||||||||||| ||||||||| ||  |||||||||| |||||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaat 34176630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 38576750 - 38576843
Alignment:
Q  235 gattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 334  Q
    ||||| |||||| |||||| ||||| |||| |||||||||||||         ||||| ||||||  | |||||||||||||| ||||||||||||||||    
T  38576750 gattcgattttggaatgaaggatatggagaacacatgttgaatg---------aagaagtttgattatattgagatgaaaatggtaactgattgtaagaa 38576840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 458
Target Start/End: Complemental strand, 20067966 - 20067902
Alignment:
Q  395 gaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatg 458  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  20067966 gaagaagtataatgttattgagatgaaaatgataactgattctaagaataaaaatgaagaaaatg 20067902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 32342643 - 32342592
Alignment:
Q  294 tttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaat 345  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  32342643 tttgatgtttttgagatgaaaatgataattgattgtaagaaaaaactaaaat 32342592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 32047233 - 32047194
Alignment:
Q  386 gaatgagatgaagaagtttaatgttcttgagatgaaaatg 425  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  32047233 gaatgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 32342659 - 32342610
Alignment:
Q  386 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 435  Q
    |||||||||||| |||||| ||||| |||||||||||||||||| |||||    
T  32342659 gaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgatt 32342610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 20206479 - 20206527
Alignment:
Q  286 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 334  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  20206479 ttaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 22100502 - 22100550
Alignment:
Q  286 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 334  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  22100502 ttaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 20206481 - 20206531
Alignment:
Q  396 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 445  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 20206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 22100504 - 22100554
Alignment:
Q  396 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 445  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 22100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 7556132 - 7556177
Alignment:
Q  386 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataact 431  Q
    |||||| ||||| || ||||||||||||||||||||||||| ||||    
T  7556132 gaatgatatgaataaatttaatgttcttgagatgaaaatgacaact 7556177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 15131537 - 15131650
Alignment:
Q  224 ataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaact 323  Q
    |||| |||||||||| |||||| ||| |||  | |||||||||||||| ||||||       | ||||||||||||||| ||||||| |||||| |||||    
T  15131537 ataagaaataagatttaatttttaaacgaagtaaatagagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaact 15131636  T
Q  324 gattgtaagaaaaa 337  Q
    ||| ||||||||||    
T  15131637 gatagtaagaaaaa 15131650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 20512694 - 20512756
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatt 350  Q
    |||||| || |||||||||||||||||| | ||||| ||||||||||||| | ||||||||||    
T  20512694 aagaaacttaatgtttttgagatgaaaaagataactaattgtaagaaaaaaccaaaatacatt 20512756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 25234224 - 25234274
Alignment:
Q  286 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaa 336  Q
    ||||||||||||||||| |||||||||||||| ||||||||  ||||||||    
T  25234224 ttaagaaatttgatgttcttgagatgaaaatggtaactgatgctaagaaaa 25234274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 20512848 - 20512919
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaa 461  Q
    |||||||||||||| |||||  | |||||||||||| || ||| ||||| |||||||||| |||||||||||    
T  20512848 agatgaagaagtttgatgtttataagatgaaaatgacaattgattttaaaaataaagatgaagaaaatgaaa 20512919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 15131595 - 15131639
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 434  Q
    ||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  15131595 gagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 463
Target Start/End: Complemental strand, 7641900 - 7641829
Alignment:
Q  393 atgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaaat 463  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||||||||||||| || |||||||||||||    
T  7641900 atgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaat 7641829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 54437855 - 54437806
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  54437855 aagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 45228345 - 45228378
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaat 424  Q
    ||||||| ||||||||||||||||||||||||||    
T  45228345 agatgaaaaagtttaatgttcttgagatgaaaat 45228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 54437689 - 54437657
Alignment:
Q  393 atgaagaagtttaatgttcttgagatgaaaatg 425  Q
    |||||||||||||||||| ||||||||||||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatg 54437657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 54437860 - 54437816
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 435  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgatt 54437816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 32166655 - 32166699
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 434  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgat 32166699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 33897850 - 33897758
Alignment:
Q  224 ataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaat 316  Q
    |||||||||||||||| ||||||||| |||  | || ||| | ||||||||||||       ||||||| |||||||||||||||||||||||    
T  33897850 ataataaataagattcgattttgaaacgaaataaatggaggttacatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaat 33897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 456
Target Start/End: Original strand, 6630559 - 6630626
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgattt-aagaataaagatggagaaaa 456  Q
    ||||||||||| ||||||| |||| ||||||||||| ||| |||||| ||||||||||| | ||||||    
T  6630559 gagatgaagaaatttaatgatcttaagatgaaaatggtaattgatttgaagaataaagacgaagaaaa 6630626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 31475092 - 31475039
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataa 444  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| || |||||    
T  31475092 agatgaagaagtttgatgttcttgagataaaaatagtaactgattcaaaaataa 31475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 32166661 - 32166710
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||| ||||||||| |||||||||||||| ||| |||| ||||||||||    
T  32166661 aagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaa 32166710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 34891646 - 34891533
Alignment:
Q  224 ataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaact 323  Q
    |||| |||||||||||||||||  || |||  | || ||||||||||||||||||       | ||||||||||||||| ||||||| |||||| |||||    
T  34891646 ataacaaataagattcaattttataacgaagcaaatggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataact 34891547  T
Q  324 gattgtaagaaaaa 337  Q
     || ||||||||||    
T  34891546 aatagtaagaaaaa 34891533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 29152353 - 29152402
Alignment:
Q  288 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 337  Q
    ||||| ||||||||| |||||||||||||  |||||||||||||||||||    
T  29152353 aagaagtttgatgttattgagatgaaaatagtaactgattgtaagaaaaa 29152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 34891588 - 34891547
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataact 431  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  34891588 gagatgaagaaatttgatgttcttgagatcaaaatgataact 34891547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 7463902 - 7463858
Alignment:
Q  391 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 435  Q
    |||||||||||||| |||||||| | |||||||||||||| ||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataaccgatt 7463858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 838 - 770
Alignment:
Q  390 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatg 458  Q
    ||||||||||||||| || | ||||| | ||||||||||| |||| ||| |||||| ||| ||||||||    
T  838 gagatgaagaagtttgatatacttgaaaggaaaatgataaatgatgtaaaaataaaaatgaagaaaatg 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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