View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_13 (Length: 426)
Name: NF17112_low_13
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_13 |
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| [»] scaffold0178 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 294 - 409
Target Start/End: Complemental strand, 30677021 - 30676906
Alignment:
| Q |
294 |
atccgaacatgctcttgtgcggtaagccgcacatggcttcacatgcaccttcaaattgttgtcttctgaatgatatgagtctcggcttgttgagccgttc |
393 |
Q |
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| T |
30677021 |
atccgaacgtgctcttgtgcggtaagccacacatggcttcacatgcaccttcgaattgttgccttccgaatgatatgagtctcggcttgttgagccgttc |
30676922 |
T |
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| Q |
394 |
ttattgggcattatgt |
409 |
Q |
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| T |
30676921 |
ttattggacatcatgt |
30676906 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 30677150 - 30677071
Alignment:
| Q |
221 |
tgagtgaactatatctataaaacgtgacactgaatcatac-------gacgagaacgttgataactacatatgggatttg |
293 |
Q |
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| T |
30677150 |
tgagtgaacggtatctataaaatgtgacactgaatcatgcttgtatagacgagaacgttgataactacatatgggatttg |
30677071 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 587271 - 587318
Alignment:
| Q |
28 |
tgggactgagagcttcaagagagaatatgaaaagttaaaatctgaatt |
75 |
Q |
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| T |
587271 |
tgggactgagagctccaagagagaagatgaaaagttaaaatctaaatt |
587318 |
T |
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Target: scaffold0178 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 3238 - 3191
Alignment:
| Q |
159 |
tacgttaccactgcaacgctcaagccaatatgtgaaagaggtggattg |
206 |
Q |
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| T |
3238 |
tacgttagcactccaacgctcaagtcaatatatgaaagaggtggattg |
3191 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 39832623 - 39832569
Alignment:
| Q |
155 |
caggtacgttaccactgcaacgctcaagccaatatgtgaaagaggtggattgtgt |
209 |
Q |
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| T |
39832623 |
caggcacgttaccactccaatgctcaagtcactatgtgaaagaggtgaattgtgt |
39832569 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 30808693 - 30808637
Alignment:
| Q |
160 |
acgttaccactgcaacgctcaagccaatatgtgaaagaggtggattgtgtatgaaaa |
216 |
Q |
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| T |
30808693 |
acgttagcactccaacactcaagtcggtatgtgaaagaggtggattgtgtgtgaaaa |
30808637 |
T |
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