View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_14 (Length: 409)
Name: NF17112_low_14
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 62 - 395
Target Start/End: Original strand, 56004972 - 56005295
Alignment:
| Q |
62 |
tctgcttcttactttgtgagcactacctatgaaccaaaccaaaatccaaacattgtgcatatatataactataagctagtgagtactcctcccaatgcta |
161 |
Q |
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| T |
56004972 |
tctgctgcctactctgtgagcactacctatgaaccaaaccaaaatccaaacattgtgcatatata--actataagctagtga---ctcctcccaatgcta |
56005066 |
T |
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| Q |
162 |
aaagtgagggaaagggaaatggtgaggtgtgaaaagcaatatggaaaggagcctccagttgtcctctcagatcctatggtgttggagattaatcgtttgc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56005067 |
aaagtgagggaaagggaaatggtgaggtgtgaaaagcaatatggaaaggagcctccagttgtcctctcagatcctatggtgttggagattaatcgtttgc |
56005166 |
T |
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| Q |
262 |
ataaccaattcaaaggttctttgtttatctctctttcattcttctatgttttttctgtttccatcatcaggactattgagtttgatttagtttccatctg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56005167 |
ataaccaattcaaaggttctttgtttatctctctttcattcttctatgttttttctgtttccatcatcaggactattgagtttgatttagtttcca---- |
56005262 |
T |
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| Q |
362 |
ttctggtcagtttgattcccactgttcttatata |
395 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
56005263 |
-tctggtcagtttgattcccactgttcttatata |
56005295 |
T |
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