View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_15 (Length: 400)
Name: NF17112_low_15
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 33490027 - 33490185
Alignment:
| Q |
8 |
ctctaaagcatagcaaaataaaatttaaagttataagatttatttattattttatataaatctttcatatttctaatctcccaaaagcaaactcaaatta |
107 |
Q |
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| T |
33490027 |
ctctaaagcatagcaaaataaaatttaaagttataagatttatttattattttatataaatctttcatatttctaatctcccaaaagcaaactcaaatta |
33490126 |
T |
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| Q |
108 |
atatactacatttccatatcatctcaattttttgttgttgaatttttacgaatctcctc |
166 |
Q |
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| T |
33490127 |
atatactaaatttccatatcatctcaattttttgttgttgaattgttacgaatctcctc |
33490185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 228 - 382
Target Start/End: Original strand, 33490247 - 33490401
Alignment:
| Q |
228 |
tattgcattaaactcttctaaaatctgtttctattacaaggggagtcctatttggctatttatnnnnnnntacaacgatattggccaatgaaatgggtca |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
33490247 |
tattgcattaaactcttctaaaatctgtttctattacaaggggagtcctatttggctatttataaaaaaatacaacgatattgaccaatgaaatgggtca |
33490346 |
T |
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| Q |
328 |
atggtatgacccaatgactagtggaaatctactcaaattattcataacaccctct |
382 |
Q |
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| T |
33490347 |
atggtatgacccaatgactagtggaaatctactcaaattattcataacaccctct |
33490401 |
T |
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