View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_16 (Length: 394)
Name: NF17112_low_16
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 182 - 378
Target Start/End: Complemental strand, 55893976 - 55893780
Alignment:
| Q |
182 |
tggtattttattgttcacaatataaaatattctatttcatttaaatcaattacgttgatcaaaatccaaatatacctaaagaaactcattggttctatgt |
281 |
Q |
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| T |
55893976 |
tggtattttattgttcacaatataaaatattctatttcatttaaatcaattacgttgatcaaaatccaaatatacctaaagaaactcattggttctatga |
55893877 |
T |
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| Q |
282 |
tcatcannnnnnncacttgccacttaccaaaggttttaagaagttggattattcaattgacaattatcctctctatgcatacaattaaggttcactg |
378 |
Q |
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| T |
55893876 |
tcatcatttttttcacttgccacttaccaaaggttttaagaagttggattattcaattgacaattatcctctctatgcatacaattaaggttcactg |
55893780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 55894124 - 55893988
Alignment:
| Q |
6 |
agtgagaagaaatcataatgagatacaatagaatgtggaaaaaatatctataaaattagaagaaaactg--nnnnnnnnnnnnnnnnnataattaaaaga |
103 |
Q |
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| T |
55894124 |
agtgaaaagaaatcataatgagatacaatagaatgtggaaaaaatatctataaaattagaagaaaactgtttttttttttttttttatataattaaaaga |
55894025 |
T |
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| Q |
104 |
caagcgaaaactaatgctatgtaatgttctcttcatt |
140 |
Q |
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| T |
55894024 |
caagcgaaaactaatgctatgtaatgttctcttcatt |
55893988 |
T |
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