View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_17 (Length: 392)
Name: NF17112_low_17
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 41487173 - 41486782
Alignment:
| Q |
1 |
cacagacaactgacaagactatgacatataacgtgtcaaactccgaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcat |
100 |
Q |
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| T |
41487173 |
cacaaacaactgacaagactatgacatataacgtgtcaaactcggaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcat |
41487074 |
T |
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| Q |
101 |
agcttattttcacccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcttggctaaaggcatacaccctaggtact |
200 |
Q |
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| T |
41487073 |
agcttattttcacccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcctggctaaaggcatacaccctaggtact |
41486974 |
T |
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| Q |
201 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaa |
300 |
Q |
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| T |
41486973 |
cttataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaa |
41486874 |
T |
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| Q |
301 |
ataaggaaaacttaagataatcactgtcacaaaaaatatctgatgtactttagaggattgaactggtacacagagcatcaagatataaatat |
392 |
Q |
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| T |
41486873 |
ataaggaaaacttaagataatcactgtcacaaaaaatatctgatgtactttagaggattgaactggtacacagagcatcaagatataaatat |
41486782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 41488896 - 41488768
Alignment:
| Q |
201 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaattta---tagaaatattaaatgtctaaaatcatg |
297 |
Q |
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| T |
41488896 |
ctcataaatctatagtaacgcaacatatagacatcaattgcagtattttagaaattactgggaaaatgtacagaagaaatactagatgactaaaatcatg |
41488797 |
T |
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| Q |
298 |
caaataaggaaaacttaagataatcactg |
326 |
Q |
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| T |
41488796 |
caaataagcaaaatttaagataattactg |
41488768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 41488726 - 41488681
Alignment:
| Q |
347 |
actttagaggattgaactggtacacagagcatcaagatataaatat |
392 |
Q |
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| T |
41488726 |
actttagaggattgaactggtatatagagcgtcaatatataaatat |
41488681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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