View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_19 (Length: 367)
Name: NF17112_low_19
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 32781771 - 32781424
Alignment:
| Q |
1 |
tatcaaaccaaattatatcaaagtcctctcaaagttaaacatgaaattgtggcttaatctgcaaatccccaagaaaaatgatgagaccaaacagactata |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32781771 |
tatcaaaccaaattatatcaaagttctctcaaagttaaacatgaaattgagacttaatctgcaaatccccaagaaaaatgatgagaccagacagactata |
32781672 |
T |
|
| Q |
101 |
ttctaattagatgttaacaggtaaattattcaccaaatatgaacaattctatcatatcaaccacaagagtctttaattactcatcaaaaaatagtctttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32781671 |
ttctaattagatgttaacaggtaaattattcaccaaatatgaacaattctatcatatcaaccacaagagtctttaattactcatcaaaaaatagtctctt |
32781572 |
T |
|
| Q |
201 |
agttgttattttcaaataagaaaaaccaatcaataaaatagatattcaacgacacattgaaaattattattactttcattttcatcaattcaaaacccat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||| |
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| T |
32781571 |
agttgttattttcaaataagaaaaaccaatcaatgaaatagatattcaatgacacaatgaaaattatta----cttcattttcaccaattcaaaacccat |
32781476 |
T |
|
| Q |
301 |
aaaagtattttaaaaatccaaacacatattttcagcaataattagatagtat |
352 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32781475 |
aaaagtattttcaaaatccaaacacatattttcagcaataattagatagtat |
32781424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 1618818 - 1619094
Alignment:
| Q |
5 |
aaaccaaattatatcaaagtcctctcaaagttaaacatgaaattgtggcttaatctgcaaatccccaagaaaaatgatgagaccaaacagactatattct |
104 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
1618818 |
aaaccaaattatatcaaaatcttctcaaagttaaacatgaaaataagacttaatctgcaaatccccaagaaaattgatgagaccagacagactatattct |
1618917 |
T |
|
| Q |
105 |
aattagatgttaacaggtaaattattcaccaaatatgaacaattctatcatatcaaccacaagagtctttaattactcatcaaaaaatagtcttttagtt |
204 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||| || || |||||||||||||||||| ||| || |
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| T |
1618918 |
aattagatgttaataggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaagctcatcaaaaaatagtctcttattt |
1619017 |
T |
|
| Q |
205 |
gttattttcaaataagaaaaaccaatcaataaaatagatattcaacgacacattgaaaattattattactttcattttca |
284 |
Q |
| |
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|||||||||||||||| ||||||||||||| | |||||||||||| |||||| ||||| ||||||||||||||||||| |
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|
| T |
1619018 |
gttattttcaaataagtaaaaccaatcaatgatatagatattcaatgacacaatgaaa---attattactttcattttca |
1619094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 32573517 - 32573793
Alignment:
| Q |
5 |
aaaccaaattatatcaaagtcctctcaaagttaaacatgaaattgtggcttaatctgcaaatccccaagaaaaatgatgagaccaaacagactatattct |
104 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
32573517 |
aaaccaaattatatcaaaatcctctcagagttaaacatgaaaataagacttaatctgcaaatccccaagaaaattgatgagaccagacagactatattct |
32573616 |
T |
|
| Q |
105 |
aattagatgttaacaggtaaattattcaccaaatatgaacaattctatcatatcaaccacaagagtctttaattactcatcaaaaaatagtcttttagtt |
204 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||| || || ||||| |||||||||||| ||| || |
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|
| T |
32573617 |
aattagatgttaataggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagttttaaaaagctcataaaaaaatagtctcttattt |
32573716 |
T |
|
| Q |
205 |
gttattttcaaataagaaaaaccaatcaataaaatagatattcaacgacacattgaaaattattattactttcattttca |
284 |
Q |
| |
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|||||||||||||||| |||||||||| || | |||||||||||| |||||| ||||| ||||||||||||||||||| |
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|
| T |
32573717 |
gttattttcaaataagtaaaaccaatctatgatatagatattcaatgacacaatgaaa---attattactttcattttca |
32573793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 45337462 - 45337616
Alignment:
| Q |
186 |
aaaaaatagtcttttagttgttattttcaaataagaaaaaccaatcaataaaatagatattcaacgacacattgaaaattattattactttcattttcat |
285 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||| | ||||| ||||||||||||||||||| |
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|
| T |
45337462 |
aaaaaatagtctcttaattgttattttcaaataagaaaaaccaatcaatgagatagatattcagcgacaaaatgaaa---attattactttcattttcac |
45337558 |
T |
|
| Q |
286 |
caattcaaaacccataaaagtattttaaaaatccaaacacatattttcagcaataatt |
343 |
Q |
| |
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|||| ||| |||||||||||||||| |||||| ||||||||||||||| | |||||| |
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|
| T |
45337559 |
caatagaaaccccataaaagtattttgaaaatcaaaacacatattttcaccgataatt |
45337616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 45337242 - 45337327
Alignment:
| Q |
71 |
aagaaaaatgatgagaccaaacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacaattctatcata |
156 |
Q |
| |
|
||||||||||||||| ||| | | ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |
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|
| T |
45337242 |
aagaaaaatgatgaggccagagaaactatattctaattagatgttaagaggtaaatcattcaccaaatatgaacacttctatcata |
45337327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 25125709 - 25125786
Alignment:
| Q |
5 |
aaaccaaattatatcaaagtcctctcaaagttaaacatgaaattgtggcttaatctgcaaatccccaagaaaaatgat |
82 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||||| ||||| || | |||||||||||||||||||||||||||||| |
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| T |
25125709 |
aaaccaaattttatcaaaatcctctcgaagttaaaattgaaaatgagacttaatctgcaaatccccaagaaaaatgat |
25125786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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