View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_22 (Length: 337)
Name: NF17112_low_22
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 56403338 - 56403642
Alignment:
| Q |
8 |
cgaagaatatggattgacaaatgcgggattaagttatgaaatataagtcaattgcatacatactgtacnnnnnnnnnnnaatgaaatttctccttggcca |
107 |
Q |
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| T |
56403338 |
cgaagtatatggattgacaaatgcgggattaagttatgaaatataagtcaattgcatacatactgtacttttttttt--aatgaaatttctccttggcca |
56403435 |
T |
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| Q |
108 |
taaattgaacacgtattgttaagatacttgactcttcttgtgattatcttgttgatgaccaaaactcaaaaagtaaaacaaaatgcttatatgtttttct |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56403436 |
taaattgaacacgtattgttaagatatttgactcttcttgtgattatcttgttgatgaccaaaactcaaaaagtgaaacaaaatgcttatatgtttttct |
56403535 |
T |
|
| Q |
208 |
ctatgcattggatcatgacttgagtatgttgattgcataaaacagttgttgatctgatttcttaataatgatcaaattgacaagaatatgcaaacaacca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56403536 |
ctatgcattggatcatgacttgagtatgttgattgcataaaacaggtgttgatctgatttcttaataatgatcaaattgacaagaatatgcaaacaacca |
56403635 |
T |
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| Q |
308 |
taatacg |
314 |
Q |
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||||||| |
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| T |
56403636 |
taatacg |
56403642 |
T |
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