View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17112_low_27 (Length: 253)
Name: NF17112_low_27
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 38964914 - 38965045
Alignment:
| Q |
6 |
agcagcacagaccttttgagaaaccacacatccaagcacccttttgtcccctgataactcctccacaaccagcaaaaaggccaccattagaagctccata |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38964914 |
agcaacacaaaccttttgagaaaccacacatccaagcaccattttctcccctgataactcctccacagccagcaaaaaggccaccattagaagctccata |
38965013 |
T |
|
| Q |
106 |
tgtattaagccttgtccaacgtactaaagatc |
137 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |
|
|
| T |
38965014 |
tgtattaatccttgtccaacctactaaagatc |
38965045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 38973436 - 38973523
Alignment:
| Q |
152 |
gacaaaagaacctattaaagatcacaaaatagcaaattatcgtataagaaacaatttggctaaaagaataagcatagcgactacttac |
239 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38973436 |
gacaaaagaacctactaaagatcacaaaatagcaaattatcgtataagaaacaatttggctaaaagaataagcatagcgactacttac |
38973523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 14793314 - 14793413
Alignment:
| Q |
26 |
aaaccacacatccaagcacccttttgtcccctgataactcctccacaaccagcaaaaaggccaccattagaagctccatatgtattaagccttgtccaac |
125 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||||||| ||| |||||| || || |||||||||| |||||||| ||| |||||| |
|
|
| T |
14793314 |
aaaccgcacatccaagcaccattttctcccctgataactcctccacaaccggcattaaggccgcctttggaagctccatcagtattaagtcttatccaac |
14793413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 42581680 - 42581611
Alignment:
| Q |
16 |
accttttgagaaaccacacatccaagcacccttttgtcccctgataactcctccacaaccagcaaaaaggc |
86 |
Q |
| |
|
|||||| || ||||| |||||| ||||||| |||| ||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
42581680 |
acctttcgaaaaaccgcacatcaaagcaccattttctcccc-gatgactcctccacaaccagcaagaaggc |
42581611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University