View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_4 (Length: 638)
Name: NF17112_low_4
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_4 |
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| [»] scaffold0219 (1 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 14453233 - 14452611
Alignment:
| Q |
1 |
ttcaagcaagtatttatgaattttacgaaattaatatattttt---atcgaaatggtgannnnnnnagaagatcataacatggatgtttggtcatattta |
97 |
Q |
| |
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|||||||||||||||| |||||||| |||| |||||| ||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||| |
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| T |
14453233 |
ttcaagcaagtatttaggaattttatgaaaataatattttttttttatcgaaatggtgatttttttagaagatgataacatg-atgtttggtcatattta |
14453135 |
T |
|
| Q |
98 |
gttagagcatcatatcggtgaatttgatctatcatatataatccattatgatatgacaaaatagaaaattttattggcatgataataagacataaatgat |
197 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14453134 |
gttagagcatcatatcggtgaatttgatctatcatctataatccattatgatatgacaaaatagaaaattttattggcatgataataagacataaatgat |
14453035 |
T |
|
| Q |
198 |
aatgatgctataagatcacataataagcaacatttaataattaagcatgaacaagtgcaaaggcaacaagtcgaaaggaagtgagtttccttgtgctttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14453034 |
aatgatgctataagatcacataataagcaacatttaataattaagcatgaacaagtccaaaggcaacaagtcgaaaggaagtgagtttccttgtgctttt |
14452935 |
T |
|
| Q |
298 |
gttctcgtacacaatagcttcataaaccttagtaagtgaatctattttggcagaaaaggtgaggcggtagttgatcccatgaacaatttgtgattcacct |
397 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14452934 |
gttctcatacacaatagcttcataaaccttagtaagtgaatctattttggcagaaaaggtgaggcggtagttggtcccatgaacaatttgtgattcacct |
14452835 |
T |
|
| Q |
398 |
ttgatgatcttctcgaacttaatcgttgctcctgatttcttgtcgaactcggtcacagcaaaattagcgatttcgatcacatgtggatcattgatgttgc |
497 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14452834 |
ttgatgatcttctcgaacttaatcgttgctcctgatttcttgtcgaactcggtcacagcaaaattagcgatttcgatcacatgtggatcattgatgttgc |
14452735 |
T |
|
| Q |
498 |
caatgggggaataaccatcctctatagcttgaatcctagccacataagccaacaaaacaaggaggacaggagcaagggattggaatctcatgatgtttat |
597 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14452734 |
caatgggggaataaccatcctctatagcttgaatcctagccacataagccaacaaaacaaggaggacaggaacaagggattggaatctcatgatgtttat |
14452635 |
T |
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| Q |
598 |
attgttatctttttatgcttcaga |
621 |
Q |
| |
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||| ||||| ||||||| |||||| |
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| T |
14452634 |
attattatcgttttatgtttcaga |
14452611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 491
Target Start/End: Complemental strand, 5520886 - 5520740
Alignment:
| Q |
345 |
tggcagaaaaggtgaggcggtagttgatcccatgaacaatttgtgattcacctttgatgatcttctcgaacttaatcgttgctcctgatttcttgtcgaa |
444 |
Q |
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||||||||| ||||| |||||||| |||| ||||| |||||||||||| |||| || |||||||||||| | || ||| || ||||||| | |
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| T |
5520886 |
tggcagaaatagtgagacggtagttagtccctgcaacaacttgtgattcacccttgacgaccttctcgaacttcaggtctgtccctttttgcttgtcgta |
5520787 |
T |
|
| Q |
445 |
ctcggtcacagcaaaattagcgatttcgatcacatgtggatcattga |
491 |
Q |
| |
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||||||||||||||| || |||||||| ||||| ||||||||||||| |
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| T |
5520786 |
ctcggtcacagcaaacttggcgatttcaatcacgtgtggatcattga |
5520740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 5521087 - 5521021
Alignment:
| Q |
135 |
ataatccattatgatatgacaaaatagaaaattttattggcatgataataagacataaatgataatga |
202 |
Q |
| |
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|||||| |||||||||| ||| |||| ||||||||||||| |||||||||||||||| |||| ||||| |
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| T |
5521087 |
ataatcaattatgatat-acacaatataaaattttattggtatgataataagacatacatgagaatga |
5521021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 32127604 - 32127685
Alignment:
| Q |
141 |
cattatgatatgacaaaatagaaaattttattggcatgataataagacataaatgataatgatgctataagatcacataataa |
223 |
Q |
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|
||||||||||| | |||||| ||||||||||| | ||||||||||| |||| |||| |||||||||| ||||||||||||||| |
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| T |
32127604 |
cattatgatat-agaaaatataaaattttatttgtatgataataaggcatacatgaaaatgatgctacaagatcacataataa |
32127685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 32147872 - 32147969
Alignment:
| Q |
141 |
cattatgatatgacaaaatagaaaattttattggcatgataataagacataaatgataatgatgctataagatcacataataagcaacatttaataatt |
239 |
Q |
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||||||||||| | |||||| ||||||||||| | |||||||||| |||| |||| ||||||||||||| |||||||||||| || ||| |||||||| |
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| T |
32147872 |
cattatgatat-agaaaatataaaattttatttgtttgataataaggcatacatgaaaatgatgctataaaatcacataataaacatcatctaataatt |
32147969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 1213 - 1122
Alignment:
| Q |
388 |
tgattcacctttgatgatcttctcgaacttaatcgttgctcctgatttcttgtcgaactcggtcacagcaaaattagcgatttcgatcacat |
479 |
Q |
| |
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||||||||| || ||||| |||| |||||| | | |||| |||| || ||||||| |||||||||||||||| || |||||||| ||||||| |
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| T |
1213 |
tgattcaccctttatgatgttcttgaacttcagctttgcccctgtttgcttgtcgtactcggtcacagcaaatttggcgatttctatcacat |
1122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 483
Target Start/End: Original strand, 43148299 - 43148393
Alignment:
| Q |
389 |
gattcacctttgatgatcttctcgaacttaatcgttgctcctgatttcttgtcgaactcggtcacagcaaaattagcgatttcgatcacatgtgg |
483 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | |||| || | || |||| ||||||| | ||||||||||||||||| || ||||||||||| |
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| T |
43148299 |
gattcacctttgatgactttctcgaactttaactttgccccagtttgtttgttgaactcgataacagcaaaattagcgatatcaatcacatgtgg |
43148393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 496
Target Start/End: Complemental strand, 39894421 - 39894370
Alignment:
| Q |
445 |
ctcggtcacagcaaaattagcgatttcgatcacatgtggatcattgatgttg |
496 |
Q |
| |
|
|||||| |||||||||||| | | ||||||||||||||||||||||||||| |
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|
| T |
39894421 |
ctcggtaacagcaaaattaccagtatcgatcacatgtggatcattgatgttg |
39894370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 602
Target Start/End: Complemental strand, 21100 - 21068
Alignment:
| Q |
570 |
caagggattggaatctcatgatgtttatattgt |
602 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
21100 |
caagggattggaatctcatgatgcttatattgt |
21068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 602
Target Start/End: Complemental strand, 26443 - 26411
Alignment:
| Q |
570 |
caagggattggaatctcatgatgtttatattgt |
602 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
26443 |
caagggattggaatctcatgatgcttatattgt |
26411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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