View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_6 (Length: 597)
Name: NF17112_low_6
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 26 - 416
Target Start/End: Complemental strand, 33510905 - 33510517
Alignment:
| Q |
26 |
ttaagagaatgaagaccaattcggtcccttacaatttaagcacaaaaaataaactcaaattgcaagggactaaattggaccacgaagaatagtttttgaa |
125 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33510905 |
ttaaaagaatgaagaccaattcggtcccttacaatttaagtacaaaaaataaactcaaattgcaagggactaaattggaccacgaagaatagtttttgaa |
33510806 |
T |
|
| Q |
126 |
catgcaataacctatcatcataataaccatgccattaaatagaattacgtagcgatagcgatccccagcaaaatgcaattgtgaaaatatgaaaaagtag |
225 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33510805 |
catgcaataacctatcatcataataaccatgcaattaaatagaactacgtagcgatagcgatccccagcaaaatgcaattgtgaaaatatgaaaaagtag |
33510706 |
T |
|
| Q |
226 |
aatgacagaaagaacttacaatccactctcgacggagagatcagaagatcgctatggaaagttatgggaaaataacattgcgcgtgtttgtttttgctct |
325 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33510705 |
aatgacagaaagaacttacaatccactctcgacggagagatcagaagatcgctatggaaagttctgggaaaataacattgcgcgtgtttgtttttgct-- |
33510608 |
T |
|
| Q |
326 |
ctctttaggcttatatatttgaccagttttacaattctctgatatttactctcaaattttaaccccctaaattagccgtctgacgctatat |
416 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33510607 |
ctcttcaggctcatatatttgaccagttttacaattctctgatatttactctcaaattttaaccccctaaattagccgtctgacactatat |
33510517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 591
Target Start/End: Original strand, 35822488 - 35822570
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
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||||||||||||||||||||||||||||| | |||| |||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
35822488 |
aggaaattaaaagacaagaaaaccaaactagccaattcgctgcctaaataccccagaggtatccgcaagcatgatgatatcca |
35822570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 23965418 - 23965467
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaata |
559 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23965418 |
aggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaata |
23965467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 591
Target Start/End: Complemental strand, 33510161 - 33510018
Alignment:
| Q |
453 |
acttctactccctccatctattaataggtgatccttttgtaannnnnnnnn----atgactaggaaattaaaagacaagaaaaccaaactcgtcaatccg |
548 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||| | ||||||| |
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| T |
33510161 |
acttctactccctccatccattaataggtgatacttttgtaattttattttttttatgacgaggaaattaaaagacaagaaaatcaaactggccaatccg |
33510062 |
T |
|
| Q |
549 |
ctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
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|||||||| | |||| || |||||||||||||| |||| |||| |
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| T |
33510061 |
ttgcctaaacatcccagaggtatccgcaagcatggtgatatcca |
33510018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 510 - 591
Target Start/End: Original strand, 38573016 - 38573098
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
38573016 |
aggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaataccccagaggtatccgcaagcatgatgatatcca |
38573098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 37402121 - 37402039
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
37402121 |
aggaaattaaaagacaagaaaaccaaactagccaatccgctgcctaaataccccagaggtatccgcaagcatgatgatatcca |
37402039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 53001929 - 53001842
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca------agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
53001929 |
aggaaattaaaagacaagaaaaccaaactatccaatctgctgcctaaataccccagtccagaggtatccgcaagcatgatgatatcca |
53001842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 13799151 - 13799069
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||||| |||| |
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|
| T |
13799151 |
aggaaattaaaagacaagaaaaccaaactagccaatccgctgcctaaatacccaagaggtatccgcaagcatgatgatatcca |
13799069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 591
Target Start/End: Original strand, 40698287 - 40698369
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||||||| |||| |
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|
| T |
40698287 |
aggaaattaaaagacaagaaaatcaaactacccaatccgctgcctaaataccccagaggtattcgcaagcatgatgatatcca |
40698369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 591
Target Start/End: Original strand, 1259153 - 1259235
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||| ||||| ||||||||||| || ||||||||||||||||||| |||| |
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|
| T |
1259153 |
aggaaattaaaagacaagaaaactaaactagccaatctgctgcataaataccccagaggtatccgcaagcatgatgatatcca |
1259235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 591
Target Start/End: Original strand, 8291996 - 8292078
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | |||||||||||| |||||||| | || ||||| |||||| |||||| |||| |
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|
| T |
8291996 |
aggaaattaaaagacaggaaaaacaaactagccaatccgctgccaaaataccctagaggtatcctcaagcaggatgatatcca |
8292078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 18096399 - 18096317
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca |
591 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||| ||||||| |||||| ||| || ||||||||||||||||||| |||| |
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|
| T |
18096399 |
aggaaattaaaagacaagaaaatcaaactagccaattcgctgcccaaatactccagaggtatccgcaagcatgatgatatcca |
18096317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 592
Target Start/End: Original strand, 37664669 - 37664751
Alignment:
| Q |
510 |
aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtccat |
592 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| || |||||| ||| | |||||| ||||| |
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|
| T |
37664669 |
aggaaattaaaaga-aagaaaaacaaactagtcaatctgctgcctaaataccccagaggtatccgtaagtaagatgatatccat |
37664751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 586
Target Start/End: Original strand, 15667352 - 15667427
Alignment:
| Q |
512 |
gaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgat |
586 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||| |||||||||||||| || || |||||||||||| |||||| |
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|
| T |
15667352 |
gaaattaaaagacaaaaaaaacaaactagtcaattcgctgcctaaatacatcagaggtatccgcaagcaggatgat |
15667427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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