View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_7 (Length: 593)
Name: NF17112_low_7
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 14 - 579
Target Start/End: Original strand, 31998467 - 31999032
Alignment:
| Q |
14 |
agagggagatgtgacaaaggctccagctttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaaatatgccaaatgtttgtgaa |
113 |
Q |
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| T |
31998467 |
agagggagatgtgacaaaggctccagttttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaaatatgccaaatgtttgtgaa |
31998566 |
T |
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| Q |
114 |
ctgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgtt |
213 |
Q |
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| T |
31998567 |
ctgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgtt |
31998666 |
T |
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| Q |
214 |
aagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttg |
313 |
Q |
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| T |
31998667 |
aagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttg |
31998766 |
T |
|
| Q |
314 |
atataatttgtgttgtcacagcttgattaaaacaaaaagaaataaataaaagattttgataaattaatatctatctggtttgtttttgtctaaccggcac |
413 |
Q |
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| T |
31998767 |
atataatttgtgttgtcacagcttgattaaaacaaaaagaaattaataaaagattttgagaaattaatatctatctggtttgtttttgtctaaccggcac |
31998866 |
T |
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| Q |
414 |
atatcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcaatcatcattagaattttagacgatttttaaatat |
513 |
Q |
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| T |
31998867 |
atatcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcgatcatcattagaattttagacgatttttaaatat |
31998966 |
T |
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| Q |
514 |
agttgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaac |
579 |
Q |
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| T |
31998967 |
agttgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaac |
31999032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
162 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
261 |
Q |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
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| Q |
262 |
aattgtggta |
271 |
Q |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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