View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17112_low_8 (Length: 561)
Name: NF17112_low_8
Description: NF17112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17112_low_8 |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 62 - 545
Target Start/End: Complemental strand, 13878601 - 13878121
Alignment:
| Q |
62 |
tgtttctctgtgcagaagaa---agataatgagtggaattctaggggtagatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgt |
158 |
Q |
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| T |
13878601 |
tgtttctctgtgcagaagaagaaagataatgagtggaattctagggggagatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgt |
13878502 |
T |
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| Q |
159 |
tttaaatgtgttcaacgatcttggaacattcttttcaagaaccctaaatttgttattaggaacatgcatatccatatgtctaatgatgatgatgaccacc |
258 |
Q |
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| T |
13878501 |
tttaaatgtgttcaaagatcttggaacattcttttcaagaaccctaaatttgttattaggaacatgcatatccatatgtctaatgatgatgatgaccacc |
13878402 |
T |
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| Q |
259 |
atcgtttcgtgatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaatgacaggatctttgacaagcccattgaatcaacttgcct |
358 |
Q |
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| T |
13878401 |
atcgtttcgttatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaatgacaggatctttgacaagcccattgaatcaacttgcct |
13878302 |
T |
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| Q |
359 |
agaaacccacctaatgcttctctctttacctcaacacccaacaccaacaccaacacccaacctcatcaaatccctctttccgaaaaacatccccatacga |
458 |
Q |
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| T |
13878301 |
agaaacccacctaatgcttctctctttacctcaacacccaacaccaa------cacccaacctcatcaaatccctctttccgaaaaacatccccatacga |
13878208 |
T |
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| Q |
459 |
ataatcaaaatatacggtcattgtaatggtattttatgtttggaatatgattatgattataacctaagcttaattctttggaaccct |
545 |
Q |
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| T |
13878207 |
ataatcaaaatatacggtcattgtaatggtattttatgtttggaatatgattatgattataccctaagcttaattctttggaaccct |
13878121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 19071410 - 19071467
Alignment:
| Q |
108 |
gatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgttttaaat |
165 |
Q |
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| T |
19071410 |
gatttggaggcagagatattagttagatttcctgcaaagtcacttatgcgttttaaat |
19071467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 19119300 - 19119357
Alignment:
| Q |
108 |
gatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgttttaaat |
165 |
Q |
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| T |
19119300 |
gatttggaggcagagatattagttagatttcctgcaaagtcacttatgcgttttaaat |
19119357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 58953 - 59015
Alignment:
| Q |
108 |
gatttggaggcagagatattagttagattgcctgc-----aaagtcacttatgcgttttaaat |
165 |
Q |
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| T |
58953 |
gatttggaggaagagatattagttagattgcctgcaagtgaaagtcacttatgcgttttaaat |
59015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 34169207 - 34169256
Alignment:
| Q |
147 |
tcacttatgcgttttaaatgtgttcaacgatcttggaacattcttttcaa |
196 |
Q |
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| T |
34169207 |
tcactaatgcgtttcaaatgcgttcaacgatcttggaacattctattcaa |
34169256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 21802987 - 21802924
Alignment:
| Q |
108 |
gatttggaggcagagatattagttagattgcct------gcaaagtcacttatgcgttttaaat |
165 |
Q |
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| T |
21802987 |
gatttggaggaagagatattagttggattgcctgcaagtgcaaagtcacttatgcgttttaaat |
21802924 |
T |
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