View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17113_high_1 (Length: 391)

Name: NF17113_high_1
Description: NF17113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17113_high_1
NF17113_high_1
[»] chr6 (1 HSPs)
chr6 (2-361)||(5951625-5951984)
[»] chr5 (2 HSPs)
chr5 (157-356)||(31952004-31952203)
chr5 (2-65)||(31951762-31951825)
[»] chr3 (3 HSPs)
chr3 (153-311)||(28188292-28188450)
chr3 (153-352)||(18077779-18077978)
chr3 (216-311)||(28153709-28153806)
[»] chr4 (1 HSPs)
chr4 (161-299)||(9907865-9908003)
[»] chr7 (4 HSPs)
chr7 (3-57)||(27092402-27092456)
chr7 (3-57)||(27185845-27185899)
chr7 (240-295)||(27092762-27092817)
chr7 (240-295)||(27185484-27185539)
[»] scaffold1163 (1 HSPs)
scaffold1163 (1-38)||(2253-2290)
[»] chr2 (2 HSPs)
chr2 (1-38)||(22396845-22396882)
chr2 (222-263)||(22396983-22397024)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2 - 361
Target Start/End: Original strand, 5951625 - 5951984
Alignment:
Q  2 aagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacgcagaattattagagcggctca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5951625 aagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacacagaattattagagcggctca 5951724  T
Q  102 ctacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5951725 ctacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtaccaataacactgtgtgccggctgcgaaccacgaagaatc 5951824  T
Q  202 gctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggatcatgct 301  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951825 gctgctagacccaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggatcatgct 5951924  T
Q  302 catgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951925 catgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgt 5951984  T

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Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 157 - 356
Target Start/End: Original strand, 31952004 - 31952203
Alignment:
Q  157 taagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaata 256  Q
    ||||||||||||||||| || || |  || |||||  | ||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  31952004 taagtacctataacactatgagctgattgagaaccttggagaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaata 31952103  T
Q  257 tgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttg 356  Q
    ||||||| || || ||||| ||||| ||||| || ||||||||  |||||| |||||| ||||| ||||| ||||||||  |||||||||||||||||||    
T  31952104 tgttatcacattttaggtccctatggattacaggtggatcatggccatgtaaataaactagaccttgtaaaatttggcgcgcccaactctttattgcttg 31952203  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 31951762 - 31951825
Alignment:
Q  2 aagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaa 65  Q
    |||||||||||||||||| |||||||  || ||||||||||||||||| ||||||  |||||||    
T  31951762 aagttcattgtattcttcctcgtacatttccggtgccatgaactccggtgttcctaacacaaaa 31951825  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 311
Target Start/End: Complemental strand, 28188450 - 28188292
Alignment:
Q  153 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 252  Q
    ||||||||||| |||||||||||| |  || |||||| ||||||||||||||| |||||| | ||||||||||||   |||||||||||| |||||||||    
T  28188450 aaaataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaatttttgtttgtccaagatgtccattgaca 28188351  T
Q  253 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 311  Q
    | ||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||    
T  28188350 agtatgttatcacacttgaggtccctatgaattactggatgatcatgttcatgtagata 28188292  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 352
Target Start/End: Original strand, 18077779 - 18077978
Alignment:
Q  153 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 252  Q
    |||| |||||||||||||||||||||| ||||  |||||| | |||||| ||||||||| || || | || |||||||||||| |||| | |||||||||    
T  18077779 aaaacaagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagacttaagtaaacagttttcacttgtcaaagacgtccattgaca 18077878  T
Q  253 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattg 352  Q
    ||||   |||| |  |||||||  |||||||||||| | |||||||| |||||||||||||||||||| | ||| ||||| ||  |||||||||||||||    
T  18077879 aatactatatcacgtttgaggttcctatgaattacccgtggatcatgttcatgtagataaacaagaccctctaacatttgacgtgcccaactctttattg 18077978  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 28153806 - 28153709
Alignment:
Q  216 gtcaccaattttcacttgtccaagatggccattgacaaatatgt--tatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 311  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||  |||| ||||||||||| |||||| |||| ||| ||||||| |||||||||||    
T  28153806 gtcaccaatttttgcttgtccaagatgtccattgacaagtatgttatatcacacttgaggtccctatgagttactggatgatcatgttcatgtagata 28153709  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 299
Target Start/End: Complemental strand, 9908003 - 9907865
Alignment:
Q  161 tacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgtt 260  Q
    ||||||| |||||||||||  | || || ||||||||||| ||||| || ||||  |||||||| || || |  || | ||| ||||||||||| |||||    
T  9908003 tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt 9907904  T
Q  261 atcgcacttgaggtctctatgaattaccggaggatcatg 299  Q
    ||| ||||| ||||||||||| || || |||||||||||    
T  9907903 atcacactttaggtctctatgtatcacaggaggatcatg 9907865  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 27092402 - 27092456
Alignment:
Q  3 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 57  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27092402 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27092456  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 27185899 - 27185845
Alignment:
Q  3 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 57  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27185899 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27185845  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 27092762 - 27092817
Alignment:
Q  240 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 295  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27092762 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27092817  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 27185539 - 27185484
Alignment:
Q  240 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 295  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27185539 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27185484  T

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Target: scaffold1163 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2253 - 2290
Alignment:
Q  1 taagttcattgtattcttcttcgtacaactctggtgcc 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2253 taagttcattgtattcttcttcgtacaattctggtgcc 2290  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22396845 - 22396882
Alignment:
Q  1 taagttcattgtattcttcttcgtacaactctggtgcc 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  22396845 taagttcattttattcttcttcgtacaattctggtgcc 22396882  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 22396983 - 22397024
Alignment:
Q  222 aattttcacttgtccaagatggccattgacaaatatgttatc 263  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  22396983 aattttcacgtgtccaagatgtccattgacaaatgtgttatc 22397024  T

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