View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17113_high_3 (Length: 326)

Name: NF17113_high_3
Description: NF17113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17113_high_3
NF17113_high_3
[»] chr1 (10 HSPs)
chr1 (2-305)||(4570774-4571082)
chr1 (7-236)||(4014949-4015185)
chr1 (7-219)||(10218835-10219054)
chr1 (12-236)||(21855367-21855592)
chr1 (11-236)||(4016756-4016981)
chr1 (8-219)||(4366496-4366708)
chr1 (99-230)||(17560763-17560894)
chr1 (99-230)||(39379051-39379182)
chr1 (155-204)||(15961233-15961282)
chr1 (145-221)||(50645484-50645560)
[»] chr5 (5 HSPs)
chr5 (12-236)||(24330883-24331108)
chr5 (145-220)||(18964830-18964905)
chr5 (145-218)||(29597554-29597627)
chr5 (145-218)||(29642354-29642427)
chr5 (145-218)||(29647671-29647744)
[»] chr3 (1 HSPs)
chr3 (99-220)||(3625683-3625804)
[»] chr7 (26 HSPs)
chr7 (8-220)||(29859311-29859524)
chr7 (119-220)||(29874480-29874581)
chr7 (99-220)||(29921993-29922114)
chr7 (99-219)||(29867188-29867305)
chr7 (99-220)||(29454103-29454224)
chr7 (8-219)||(29106665-29106883)
chr7 (99-219)||(29881205-29881325)
chr7 (150-220)||(14076678-14076748)
chr7 (150-220)||(14386706-14386776)
chr7 (8-83)||(29885105-29885180)
chr7 (8-83)||(29899225-29899300)
chr7 (150-220)||(29431001-29431071)
chr7 (161-221)||(1985954-1986014)
chr7 (102-213)||(29445663-29445774)
chr7 (148-218)||(29899372-29899442)
chr7 (155-220)||(660847-660912)
chr7 (156-219)||(19604464-19604527)
chr7 (150-218)||(19344577-19344645)
chr7 (156-220)||(22100499-22100563)
chr7 (174-221)||(18514786-18514833)
chr7 (145-220)||(20352090-20352165)
chr7 (166-220)||(6864807-6864861)
chr7 (149-197)||(9807823-9807871)
chr7 (8-52)||(29881113-29881157)
chr7 (99-135)||(29920128-29920164)
chr7 (8-52)||(29922156-29922200)
[»] chr4 (8 HSPs)
chr4 (99-230)||(3557675-3557806)
chr4 (99-230)||(3560948-3561079)
chr4 (99-230)||(3565693-3565824)
chr4 (145-220)||(53774835-53774910)
chr4 (145-220)||(11970982-11971057)
chr4 (158-219)||(53430100-53430161)
chr4 (145-220)||(11981683-11981758)
chr4 (99-230)||(1686275-1686406)
[»] chr6 (6 HSPs)
chr6 (150-221)||(6921349-6921420)
chr6 (150-218)||(6954521-6954589)
chr6 (161-220)||(6947880-6947939)
chr6 (161-220)||(17369675-17369734)
chr6 (145-220)||(20770645-20770720)
chr6 (155-221)||(6935217-6935283)
[»] chr2 (3 HSPs)
chr2 (174-221)||(14514924-14514971)
chr2 (150-216)||(20975558-20975624)
chr2 (156-220)||(554482-554546)
[»] scaffold0867 (1 HSPs)
scaffold0867 (156-220)||(4669-4733)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 305
Target Start/End: Original strand, 4570774 - 4571082
Alignment:
Q  2 acaagctgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgc-tactatt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  4570774 acaagctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaactagcctactatt 4570873  T
Q  101 ggtgt----gttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttgg 196  Q
    |||||    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  4570874 ggtgtgtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttgg 4570973  T
Q  197 actcaattgcttaaaattagttatagtgatcttctaatagcttactatgacttgcgtgacagtgacaaaaggtattttcaactgatgctattatttcttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570974 actcaattgcttaaaattagttatagtgatcttctaatagcttactatgacttgcgtgacagtgacaaaaggtattttcaactgatgctattatttcttt 4571073  T
Q  297 ctgatgatg 305  Q
    |||| ||||    
T  4571074 ctgacgatg 4571082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 4015185 - 4014949
Alignment:
Q  7 ctgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgt 105  Q
    ||||||||||||| |||||||||||| | ||| | ||||| |||||||  || |||||||| ||||||||||||| |||  ||| || | ||||||||||    
T  4015185 ctgttattgtttcacttgatttggagacagaggcgtacaagcaatacacagttcctcgtggcgttgatgaagtgctgcctgactcgccaactattggtgt 4015086  T
Q  106 gttgggaggctgcctttgtttttcttattcacacagggtaac------tgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggact 199  Q
    | |||||||||||||||||||||||||||  ||||||| |||      |||| | ||||||||||  |||||||||||||||||||||||||||||||||    
T  4015085 gctgggaggctgcctttgtttttcttatttgcacagggaaactcattttgatattgttatatggcagatgaagaaatttggggttgaagattcttggact 4014986  T
Q  200 caattgcttaaaattagttatagtgatcttctaatag 236  Q
    ||||| |||||| |||||||   ||||||||||||||    
T  4014985 caattccttaaagttagttaccatgatcttctaatag 4014949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 10218835 - 10219054
Alignment:
Q  7 ctgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgc---cgaacttg----ctactat 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||  ||||| ||||| |||   || ||       | |||||    
T  10218835 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaacacaccaactat 10218934  T
Q  100 tggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggact 199  Q
    |||||||||||| || |||||||||||||||| ||  |||| || ||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||    
T  10218935 tggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagattcttggact 10219034  T
Q  200 caattgcttaaaattagtta 219  Q
    ||||| ||||||||||||||    
T  10219035 caattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 21855592 - 21855367
Alignment:
Q  12 attgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgtgttgg 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   || | |||||||||| |||     
T  21855592 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 21855493  T
Q  111 gaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaa 210  Q
    | ||||| ||||||||||| |||||  ||| || ||| ||||| |||||||||   |||||| ||||||||||||||||||||||||||||| | |||||    
T  21855492 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaa 21855393  T
Q  211 aattagttatagtgatcttctaatag 236  Q
    | |||||||   | ||||||||||||    
T  21855392 agttagttaccataatcttctaatag 21855367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 4016981 - 4016756
Alignment:
Q  11 tattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttg 109  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  ||||| ||| |||||   || || | |||||| ||||||||    
T  4016981 tattgtttctcttgatttgg-gacggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttacatgccaactattagtgtgttg 4016883  T
Q  110 ggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgctta 209  Q
    || |||||||||||||||||||||||  | |||  |||  |||||  ||| ||||  |||||||||||||| ||||||||||| |||||||| ||| |||    
T  4016882 gggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgttta 4016783  T
Q  210 aaattagttatagtgatcttctaatag 236  Q
    || |||||||   ||||||||||||||    
T  4016782 aatttagttaccatgatcttctaatag 4016756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 4366708 - 4366496
Alignment:
Q  8 tgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc----gaacttgctactattggt 103  Q
    |||||||||||| |||||| |||   | |||||||||||||||||| || ||||||||||  |||| |||||||| ||    ||||   | ||  |||||    
T  4366708 tgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccacctactgaac---caacagttggt 4366612  T
Q  104 gtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaat 203  Q
    |||||||| | |||||||||||||||||||||  ||| |  ||||||||| ||| ||||||  ||||||||||| ||||||||||| |||||||||| ||    
T  4366611 gtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaagagtcttggactccat 4366512  T
Q  204 tgcttaaaattagtta 219  Q
    | |||||| |||||||    
T  4366511 ttcttaaagttagtta 4366496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 17560894 - 17560763
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||| | ||| ||||||||||||||||   ||| || ||  ||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  17560894 ttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaagattcttggac 17560795  T
Q  199 tcaattgcttaaaattagttatagtgatcttc 230  Q
     | ||| |||| |||||||||||  |||||||    
T  17560794 accattccttataattagttataacgatcttc 17560763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 39379182 - 39379051
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||| | ||| ||||||||||||||||   ||||   |||||||||  |||||||||  |||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  199 tcaattgcttaaaattagttatagtgatcttc 230  Q
    |||||| |||||||| ||||||  ||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttc 39379051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 15961233 - 15961282
Alignment:
Q  155 gttatatggcgaatgaagaaatttggggttgaagattcttggactcaatt 204  Q
    |||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaatt 15961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 50645560 - 50645484
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 221  Q
    |||| |||| ||||| |||| ||||||| | ||||| ||| |||| ||||||| ||||||  |||||||||||||||    
T  50645560 aactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttata 50645484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 24331108 - 24330883
Alignment:
Q  12 attgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgtgttgg 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   || | |||||||||| |||     
T  24331108 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 24331009  T
Q  111 gaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaa 210  Q
    | ||||| ||||||||||| |||||  ||| || ||| ||||| |||||||||   |||||| ||||||||||||||||||||||||||||| | |||||    
T  24331008 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaa 24330909  T
Q  211 aattagttatagtgatcttctaatag 236  Q
    | |||||||   | ||||||||||||    
T  24330908 agttagttaccataatcttctaatag 24330883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 18964905 - 18964830
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| ||||| ||||||||| ||||||| ||||||| |||||||| |||||||||||||| ||||||||| |||||    
T  18964905 aactcatttcattatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttat 18964830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 29597627 - 29597554
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    |||| |||| |||||||||| |||||   ||||||| |||||| | |||||||||||||| |||||||||||||    
T  29597627 aactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 29642354 - 29642427
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    |||| ||||||||||||||| |||||   |||||||  ||||| | |||||||||||||| |||||||||||||    
T  29642354 aactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 29647671 - 29647744
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    |||| |||| |||||||||| |||||   |||||||  ||||| | |||||||||||||| |||||||||||||    
T  29647671 aactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 3625683 - 3625804
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||| | |||||||||||||||||||||  ||| ||||||  || |  ||||||||| |||||||||||||||||||||||| ||||||||    
T  3625683 ttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaagagtcttggac 3625782  T
Q  199 tcaattgcttaaaattagttat 220  Q
    |||||| |||||||||||||||    
T  3625783 tcaatttcttaaaattagttat 3625804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 29859311 - 29859524
Alignment:
Q  8 tgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc-gaacttgctactattggtgtg 106  Q
    |||||||||||| |||||||||| |   || ||||||||||||||| |  ||||||||||| ||||||| |||||||| |   |  | ||||||||||||    
T  29859311 tgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgccgcctgtgataccaactattggtgtg 29859410  T
Q  107 ttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgc 206  Q
    ||||| | |   ||||||||||||||||   ||| || || ||||||||||||||||   |||||||||||||| ||||||||||||||||| | ||| |    
T  29859411 ttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttc 29859510  T
Q  207 ttaaaattagttat 220  Q
    ||||||||||||||    
T  29859511 ttaaaattagttat 29859524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 29874480 - 29874581
Alignment:
Q  119 ctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    ||||||||||||||||   ||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  29874480 ctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagtt 29874579  T
Q  219 at 220  Q
    ||    
T  29874580 at 29874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 29922114 - 29921993
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||| ||||||||||||||||||||| |  |||  | ||||||||| ||||||||||  |||||||||||||||| ||||||||||||| |    
T  29922114 ttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagattcttggtc 29922015  T
Q  199 tcaattgcttaaaattagttat 220  Q
    |||||| |||| ||||||||||    
T  29922014 tcaattccttagaattagttat 29921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 29867188 - 29867305
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||| | |||||||||||||||||||||  |   || |||||||||  ||||||||| |||||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattctaa---ggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  199 tcaattgcttaaaattagtta 219  Q
    |||||| |||| |||||||||    
T  29867285 tcaattccttagaattagtta 29867305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 29454224 - 29454103
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||| ||||| ||  |||||||||||||||||||  ||| || | | ||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  29454224 ttggtgttttggggggaagcctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggac 29454125  T
Q  199 tcaattgcttaaaattagttat 220  Q
    ||||||  ||||||||||||||    
T  29454124 tcaattctttaaaattagttat 29454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 29106665 - 29106883
Alignment:
Q  8 tgttattgtttctcttgatttggaggc-ggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgt 105  Q
    |||||||||||| ||||||| |||||  |||||||||||||||||||| | ||||||||||| |||||||||||||| |  |||   | ||  |||||||    
T  29106665 tgttattgtttcacttgatt-ggaggatggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgt 29106763  T
Q  106 gttgggaggctgcctttgtttttcttattcacacagggtaac------tgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggact 199  Q
    |||||| |||||||||||||||||||||| | ||     |||      |||||| ||| ||||||  ||||||||||||||||||||||| |||||||||    
T  29106764 gttggggggctgcctttgtttttcttatttatacgtaaaaacagattttgattttgttgtatggcagatgaagaaatttggggttgaagagtcttggact 29106863  T
Q  200 caattgcttaaaattagtta 219  Q
    ||| |  |||||||||||||    
T  29106864 caactttttaaaattagtta 29106883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 29881205 - 29881325
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||  | ||||||||| |||| |||||   ||| || |||||||||  || | |||| |||||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  199 tcaattgcttaaaattagtta 219  Q
    |||||| |||| |||||||||    
T  29881305 tcaattccttagaattagtta 29881325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 14076678 - 14076748
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14076748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 14386706 - 14386776
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 29885105 - 29885180
Alignment:
Q  8 tgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg 83  Q
    |||||||||||| |||||||||||| |||||||||| || || |||||| |||||| |||| ||||||||||||||    
T  29885105 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccg 29885180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 29899225 - 29899300
Alignment:
Q  8 tgttattgtttctcttgatttggaggcggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg 83  Q
    |||||||||||| |||||||||||| |||||||||| || || |||||| |||||| |||| ||||||||||||||    
T  29899225 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccg 29899300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 29431071 - 29431001
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| ||||||||||| |||| ||||||||||| | ||||||||||||| ||||| |||||||||||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttat 29431001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 1986014 - 1985954
Alignment:
Q  161 tggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 221  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  1986014 tggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttata 1985954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 29445774 - 29445663
Alignment:
Q  102 gtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactca 201  Q
    |||||||||| |||| |||||||| ||||||||   ||| || ||| |||||  |||||||||  |||||| |||| ||||||||||| |||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactca 29445675  T
Q  202 attgcttaaaat 213  Q
    ||| || |||||    
T  29445674 atttctaaaaat 29445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 29899372 - 29899442
Alignment:
Q  148 tgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    |||||| ||||||||||  ||||||||||||||||||||||| || |||||||||||  | ||||||||||    
T  29899372 tgattttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 660912 - 660847
Alignment:
Q  155 gttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||||||  |||||| ||||| | |||||||| |||||||||||||| |||||||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttat 660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 19604527 - 19604464
Alignment:
Q  156 ttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtta 219  Q
    |||||||||  |||||| ||||||| |||||||| || ||||||||||| ||||||||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 19344645 - 19344577
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    |||| ||||||||||  |||| | ||||||| |||||| | |||||||||||||| |||||||||||||    
T  19344645 attttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagtt 19344577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 22100499 - 22100563
Alignment:
Q  156 ttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||||| ||||||||||||||| ||| |||| ||||||||||| ||  | ||||||||||||    
T  22100499 ttatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 22100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 18514833 - 18514786
Alignment:
Q  174 aatttggggttgaagattcttggactcaattgcttaaaattagttata 221  Q
    ||||||| |||||| | |||||||||||||| ||||||||||||||||    
T  18514833 aatttggagttgaaaactcttggactcaattccttaaaattagttata 18514786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 20352090 - 20352165
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| |||| || ||||||  ||||||| ||||||| ||||||||||| ||||||||| |  ||||||||||||||    
T  20352090 aactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagttat 20352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 6864861 - 6864807
Alignment:
Q  166 aatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||| ||||||| |||||||| ||||||||||| || ||||||| |||||||    
T  6864861 aatgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttat 6864807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 9807823 - 9807871
Alignment:
Q  149 gatttcgttatatggcgaatgaagaaatttggggttgaagattcttgga 197  Q
    ||||||||||||||||  |||||| ||||||| |||||||| |||||||    
T  9807823 gatttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 29881113 - 29881157
Alignment:
Q  8 tgttattgtttctcttgatttggaggcggagacatacaatcaata 52  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  29881113 tgttattgtttcacttgatttggggactgagacatacaatcaata 29881157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 29920164 - 29920128
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattc 135  Q
    |||||||||||||||||||||||| || |||||||||    
T  29920164 ttggtgtgttgggaggctgccttttttcttcttattc 29920128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 29922200 - 29922156
Alignment:
Q  8 tgttattgtttctcttgatttggaggcggagacatacaatcaata 52  Q
    |||||| |||||||||||||| | | |||||||||||||||||||    
T  29922200 tgttatcgtttctcttgatttagggacggagacatacaatcaata 29922156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 3557675 - 3557806
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||| | | ||| |||||||||||||||||  ||| || ||| |||||  |||||||||  |||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  199 tcaattgcttaaaattagttatagtgatcttc 230  Q
    |||||| |||||||||||||||  ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttc 3557806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 3561079 - 3560948
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||| ||||| |  ||||||||||||||||||||  ||| || ||| |||||  |||| ||||  ||||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  199 tcaattgcttaaaattagttatagtgatcttc 230  Q
    |||||| |||||||||||||||  ||||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttc 3560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 3565693 - 3565824
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||| | | ||||||||||||||||||||   | | |  ||| |||||  |||||||||  |||||| |||||||||||||||| ||||||||    
T  3565693 ttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 3565792  T
Q  199 tcaattgcttaaaattagttatagtgatcttc 230  Q
    |||||| |||||||||||||||  ||||||||    
T  3565793 tcaatttcttaaaattagttatcatgatcttc 3565824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 53774835 - 53774910
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| |||| |||||||||| ||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  53774835 aactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 11971057 - 11970982
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| |||| |||||||||| ||||||| ||||||| || ||||| |||||||||||||| |||| ||||||||||    
T  11971057 aactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttat 11970982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 53430161 - 53430100
Alignment:
Q  158 atatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtta 219  Q
    |||||||  |||||||||| |||||  |||||||||||||||||||| ||||||||||||||    
T  53430161 atatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 11981758 - 11981683
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| |||| |||||||||| ||||||| ||||||| || ||||| || ||||||| ||| |||||||||||||||    
T  11981758 aactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttat 11981683  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 1686406 - 1686275
Alignment:
Q  99 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggtaactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggac 198  Q
    ||||||||||||| | |||||||||||||||||||||  | | |   ||  || |  |||||||||  |||||| ||||||| ||||| || ||||||||    
T  1686406 ttggtgtgttgggggactgcctttgtttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttggcgttgacgagtcttggac 1686307  T
Q  199 tcaattgcttaaaattagttatagtgatcttc 230  Q
    |||||| ||||||  |||||||  ||||||||    
T  1686306 tcaatttcttaaatatagttattatgatcttc 1686275  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 221  Q
    |||| ||||| |||| ||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 6954589 - 6954521
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 218  Q
    |||| ||||| |||| ||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||    
T  6954589 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 6954521  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 6947939 - 6947880
Alignment:
Q  161 tggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| ||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  6947939 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 6947880  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 17369675 - 17369734
Alignment:
Q  161 tggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| ||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 17369734  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 20770645 - 20770720
Alignment:
Q  145 aactgatttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    |||| |||| |||||||||| ||||||| |||||||  ||||||| || |||| |||||| |||||||||||||||    
T  20770645 aacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttat 20770720  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 6935283 - 6935217
Alignment:
Q  155 gttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 221  Q
    ||||| |||| ||||||| ||||||| ||| |||| ||||||||| |||| ||||||||||||||||    
T  6935283 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttata 6935217  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 14514924 - 14514971
Alignment:
Q  174 aatttggggttgaagattcttggactcaattgcttaaaattagttata 221  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttata 14514971  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 20975558 - 20975624
Alignment:
Q  150 atttcgttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattag 216  Q
    |||| |||||||||| ||||| | ||||||| |||||||||||||||| ||||||| ||||| ||||    
T  20975558 attttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgtttaaatttag 20975624  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 554482 - 554546
Alignment:
Q  156 ttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||||| |||||   ||| ||| ||| |||| |||||||||||||| |||||||||||||||    
T  554482 ttatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagttat 554546  T

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Target: scaffold0867 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 4733 - 4669
Alignment:
Q  156 ttatatggcgaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 220  Q
    ||||||||| ||||||||||||||| ||| |||| ||||||||||| ||  | ||||||||||||    
T  4733 ttatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 4669  T

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