View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17114_high_3 (Length: 491)

Name: NF17114_high_3
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17114_high_3
NF17114_high_3
[»] chr4 (15 HSPs)
chr4 (18-456)||(7756123-7756561)
chr4 (18-170)||(7749932-7750083)
chr4 (323-389)||(43980639-43980705)
chr4 (323-383)||(29180331-29180391)
chr4 (323-382)||(50768586-50768645)
chr4 (323-385)||(38187645-38187707)
chr4 (323-367)||(9798010-9798054)
chr4 (323-383)||(10591422-10591482)
chr4 (323-383)||(30776403-30776463)
chr4 (323-367)||(49902168-49902212)
chr4 (323-382)||(29899856-29899915)
chr4 (323-382)||(39969909-39969968)
chr4 (323-367)||(3043102-3043146)
chr4 (323-367)||(28681800-28681844)
chr4 (323-382)||(30777628-30777688)
[»] chr5 (8 HSPs)
chr5 (323-397)||(35462658-35462732)
chr5 (323-382)||(31316755-31316814)
chr5 (323-382)||(8145967-8146026)
chr5 (325-371)||(2002100-2002146)
chr5 (326-383)||(31690573-31690630)
chr5 (323-367)||(8541533-8541577)
chr5 (323-367)||(20915005-20915049)
chr5 (323-383)||(25962401-25962461)
[»] chr1 (21 HSPs)
chr1 (323-385)||(36037381-36037443)
chr1 (323-384)||(40935568-40935629)
chr1 (323-383)||(40960430-40960490)
chr1 (323-383)||(23873783-23873843)
chr1 (323-367)||(44875323-44875367)
chr1 (323-383)||(46949465-46949525)
chr1 (323-382)||(26907048-26907107)
chr1 (339-387)||(6848262-6848310)
chr1 (323-367)||(35941985-35942029)
chr1 (327-386)||(18852371-18852430)
chr1 (323-386)||(25990892-25990955)
chr1 (323-385)||(39026199-39026262)
chr1 (328-382)||(31970266-31970320)
chr1 (323-384)||(28017800-28017861)
chr1 (326-367)||(35189349-35189390)
chr1 (323-367)||(15311321-15311365)
chr1 (351-383)||(15912081-15912113)
chr1 (323-382)||(18913301-18913361)
chr1 (327-383)||(36384076-36384132)
chr1 (323-383)||(43655993-43656053)
chr1 (323-383)||(49924563-49924623)
[»] chr3 (16 HSPs)
chr3 (327-384)||(36188920-36188977)
chr3 (323-385)||(21654390-21654452)
chr3 (323-385)||(53020328-53020390)
chr3 (323-384)||(55400883-55400944)
chr3 (323-383)||(26641027-26641087)
chr3 (326-385)||(32322152-32322211)
chr3 (323-385)||(37323996-37324058)
chr3 (326-382)||(51309561-51309618)
chr3 (323-367)||(31126357-31126401)
chr3 (323-367)||(34022744-34022788)
chr3 (323-367)||(46580680-46580724)
chr3 (323-382)||(16739081-16739140)
chr3 (323-386)||(45347625-45347688)
chr3 (323-384)||(46295990-46296051)
chr3 (351-387)||(47599623-47599659)
chr3 (351-383)||(54485292-54485324)
[»] chr8 (14 HSPs)
chr8 (323-383)||(44411163-44411223)
chr8 (323-384)||(35260204-35260265)
chr8 (323-382)||(27621277-27621336)
chr8 (323-385)||(37598216-37598278)
chr8 (325-382)||(2238550-2238607)
chr8 (325-382)||(24510652-24510709)
chr8 (323-384)||(25321539-25321600)
chr8 (323-367)||(3100100-3100144)
chr8 (323-367)||(11044204-11044248)
chr8 (323-375)||(44052768-44052820)
chr8 (323-366)||(27752733-27752776)
chr8 (323-381)||(37566453-37566511)
chr8 (323-383)||(11992875-11992935)
chr8 (323-367)||(39187377-39187421)
[»] chr2 (16 HSPs)
chr2 (323-383)||(35832556-35832616)
chr2 (323-385)||(15858639-15858701)
chr2 (323-383)||(33635480-33635540)
chr2 (323-387)||(38071398-38071462)
chr2 (323-382)||(792309-792368)
chr2 (323-382)||(21539901-21539960)
chr2 (323-385)||(14565323-14565385)
chr2 (323-385)||(43075893-43075955)
chr2 (323-384)||(10979313-10979374)
chr2 (323-383)||(10478322-10478382)
chr2 (323-367)||(38549611-38549655)
chr2 (325-371)||(13822731-13822777)
chr2 (323-367)||(4092155-4092199)
chr2 (323-367)||(5091508-5091552)
chr2 (323-383)||(28492664-28492724)
chr2 (326-382)||(29513973-29514029)
[»] scaffold0495 (1 HSPs)
scaffold0495 (323-383)||(4774-4834)
[»] chr7 (20 HSPs)
chr7 (323-387)||(21654028-21654092)
chr7 (323-375)||(32491026-32491078)
chr7 (323-383)||(43107816-43107876)
chr7 (323-385)||(35084009-35084072)
chr7 (323-382)||(35181335-35181394)
chr7 (326-382)||(18206231-18206287)
chr7 (326-386)||(18800675-18800735)
chr7 (323-367)||(19932982-19933026)
chr7 (323-383)||(47383549-47383609)
chr7 (323-382)||(3157579-3157638)
chr7 (325-371)||(30082496-30082542)
chr7 (326-392)||(40593964-40594029)
chr7 (323-379)||(22111244-22111301)
chr7 (326-383)||(29235980-29236037)
chr7 (323-379)||(40583288-40583345)
chr7 (323-375)||(2633298-2633349)
chr7 (323-367)||(23106596-23106640)
chr7 (323-367)||(41889314-41889358)
chr7 (323-367)||(44600589-44600633)
chr7 (323-367)||(48879531-48879575)
[»] chr6 (9 HSPs)
chr6 (323-383)||(10228056-10228116)
chr6 (323-382)||(5121410-5121469)
chr6 (323-367)||(12278850-12278894)
chr6 (323-383)||(17721762-17721822)
chr6 (323-383)||(30949279-30949339)
chr6 (323-382)||(374243-374302)
chr6 (323-369)||(21964101-21964147)
chr6 (323-367)||(30766590-30766634)
chr6 (325-385)||(32882642-32882702)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 7756561 - 7756123
Alignment:
Q  18 aggccctgtgaccctggaaggaataacatttaggttcagatattagaaatt-gtcgaatgaagaatctacattaaataagtgtatgcatgattacattta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756561 aggccctgtgaccctggaaggaataacatttaggttcagatattagaaatttgtcgaatgaagaatctacattaaataagtgtatgcatgattacattta 7756462  T
Q  117 caatatatttatgcaacatccatcaatgtgaccatcttaattgcatgattacaagttggagttggagtcctacnnnnnnnaatgactacagtggctcaag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  7756461 caatatatttatgcaacatccatcaatgtgaccatcttaattgcatgattacaagttggagttggagtcctactttttttaatgactacagtggctcaag 7756362  T
Q  217 ttctgattcatgagttctagtcttctagatggcagcatgcatttcgtggaatgcactcaataattatgcaatttgcattaaataaaactaattatttatt 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756361 ttctgattcatgagttctagtcttctagatggcagcatgcctttcgtggaatgcactcaataattatgcaatttgcattaaataaaactaattatttatt 7756262  T
Q  317 caaatatagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatattatgataatgttgagtattatggagtg 416  Q
    ||||||||| ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756261 caaatatag-tttcttagtaagtgtgaattggtgtttttgtcttataaattgggatggaaggagtatatatattatgataatgttgagtattatggagtg 7756163  T
Q  417 ttttgtattttacggttaaagtcaaatccatgattcatat 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7756162 ttttgtattttacggttaaagtcaaatccatgattcatat 7756123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 7750083 - 7749932
Alignment:
Q  18 aggccctgtgaccctggaaggaataacatttaggttcagatattagaaattgtcgaatgaagaatctacattaaataagtgtatgcatgattacatttac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7750083 aggccctgtgaccctggaaggaataacatttaggttcagatattagaaattgtcgaatgaagaatctacattaaataagtgtatgcatgattacatttac 7749984  T
Q  118 aatatatttatgcaacatccatcaatgtgaccatcttaattgcatgattacaa 170  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  7749983 aatatatttatgcaacatccatcaatgt-actatcttaattgcatgattacaa 7749932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 43980639 - 43980705
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatat 389  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||| |||||||||    
T  43980639 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggaatatatatat 43980705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 29180391 - 29180331
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  29180391 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 29180331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 50768586 - 50768645
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  50768586 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 50768645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 38187707 - 38187645
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| |||||||| ||||||||||| ||| ||| |||||||||    
T  38187707 tagttttcttaataagtgtgaattagtgtttttagcttataaattaggacggagggagtatat 38187645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 9798054 - 9798010
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  9798054 tagttttcttaataaatgtgaattagtgttttttgcttataaatt 9798010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 10591482 - 10591422
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||    
T  10591482 tagttttcttaataagtgtgaattactgttttttgcttataaattaggacggagggagtat 10591422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 30776463 - 30776403
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||| ||| ||| |||||||    
T  30776463 tagttttcttaataagtgtgaattagttttttttgcttataaattaggacggagggagtat 30776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 49902168 - 49902212
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  49902168 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 49902212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 29899856 - 29899915
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| ||| ||| ||||||    
T  29899856 tagttttcttaataaatgtgaattagtgttttttacttataaattaggacggagggagta 29899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 39969968 - 39969909
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| ||||||    
T  39969968 tagttttcttaataagtgtgaattactgttttttgcttataaattaggacggagggagta 39969909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 3043146 - 3043102
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||| ||||||||||    
T  3043146 tagttttcttaataagtgtgaattagtgttttttacttataaatt 3043102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 28681800 - 28681844
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| || |||||||||||||||||    
T  28681800 tagttttcttaataagtgtgaattagtattttttgcttataaatt 28681844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 30777628 - 30777688
Alignment:
Q  323 tagttttcttagtaattgtgaattggtg-ttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| ||| ||||||||||||||||| ||| ||| ||||||    
T  30777628 tagttttcttaataagtgtgaattagtgtttttttgcttataaattaggacggagggagta 30777688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 35462732 - 35462658
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatattatgataa 397  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  35462732 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatatttattacgataa 35462658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 31316814 - 31316755
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  31316814 tagttttcttaataactgtgaattagtgttttttgcttataaattaggacggagggagta 31316755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 8146026 - 8145967
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| ||||||    
T  8146026 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagta 8145967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 2002146 - 2002100
Alignment:
Q  325 gttttcttagtaattgtgaattggtgttttttgcttataaattggga 371  Q
    ||||||||| ||| |||||||| ||||||||| ||||||||||||||    
T  2002146 gttttcttaataagtgtgaatttgtgtttttttcttataaattggga 2002100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 31690630 - 31690573
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    |||||||| ||| |||||||| || |||||||||||||||||  || |||||||||||    
T  31690630 ttttcttaataagtgtgaattagtattttttgcttataaattaagacggaaggagtat 31690573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 8541577 - 8541533
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| ||||||||  |||||||||||||||||||    
T  8541577 tagttttcttaataagtgtgaattaatgttttttgcttataaatt 8541533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 20915005 - 20915049
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| || |||||||||||||||||    
T  20915005 tagttttcttaataagtgtgaattagtattttttgcttataaatt 20915049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 25962461 - 25962401
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||||||  | ||||||||||||||||| ||| ||| |||||||    
T  25962461 tagttttcttaataagtgtgaattattcttttttgcttataaattaggacggagggagtat 25962401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 36037381 - 36037443
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||||||| ||| |||||||||    
T  36037381 tagttttcttaataagtgtgaatttgtgttttttgcttataaattgggacggagggagtatat 36037443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 40935629 - 40935568
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| ||||||||    
T  40935629 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggatggagggagtata 40935568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 40960490 - 40960430
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| |||||||||||    
T  40960490 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggaaggagtat 40960430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 23873843 - 23873783
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  23873843 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 23873783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 44875323 - 44875367
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  44875323 tagttttcttagtaagtgtgaattagtgttttttgcttataaatt 44875367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 46949465 - 46949525
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  46949465 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggagggagtat 46949525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 26907107 - 26907048
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  26907107 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 26907048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 6848310 - 6848262
Alignment:
Q  339 tgtgaattggtgttttttgcttataaattgggatggaaggagtatatat 387  Q
    |||||||| ||||||||| |||||||||| ||||||| |||||||||||    
T  6848310 tgtgaattagtgtttttttcttataaattaggatggagggagtatatat 6848262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 35941985 - 35942029
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  35941985 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 35942029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 18852371 - 18852430
Alignment:
Q  327 tttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 386  Q
    ||||||| ||| |||||||| |||||||||||||||||||| | | ||| ||||||||||    
T  18852371 tttcttaataagtgtgaattagtgttttttgcttataaattagaacggagggagtatata 18852430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 25990892 - 25990955
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 386  Q
    ||||||||||| ||| ||||| ||  ||||||||||||||||||| ||| ||| ||||||||||    
T  25990892 tagttttcttaataaatgtgatttaatgttttttgcttataaattaggacggagggagtatata 25990955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 39026262 - 39026199
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgtttttt-gcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| ||||||||| ||||||||||| ||| ||| |||||||||    
T  39026262 tagttttcttaataaatgtgaattagtgtttttttgcttataaattaggacggagggagtatat 39026199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 31970320 - 31970266
Alignment:
Q  328 ttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    |||||| ||| |||||||| || ||||||||||||||||| ||| ||||||||||    
T  31970320 ttcttaataagtgtgaattagtattttttgcttataaattaggacggaaggagta 31970266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 28017800 - 28017861
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| |||  || ||||||||    
T  28017800 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacagagggagtata 28017861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 35189349 - 35189390
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  35189349 ttttcttaataaatgtgaattagtgttttttgcttataaatt 35189390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 15311321 - 15311365
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  15311321 tagttttcttaataagtgtgaattagtgttttatgcttataaatt 15311365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 15912113 - 15912081
Alignment:
Q  351 ttttttgcttataaattgggatggaaggagtat 383  Q
    |||||||||||||| ||||||||||||||||||    
T  15912113 ttttttgcttataatttgggatggaaggagtat 15912081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 18913361 - 18913301
Alignment:
Q  323 tagttttcttagtaattgtgaattggtg-ttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| ||| ||||||||||||||||| ||| ||| ||||||    
T  18913361 tagttttcttaataagtgtgaattagtgtttttttgcttataaattaggacggagggagta 18913301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 36384076 - 36384132
Alignment:
Q  327 tttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||| ||| |||||| | || ||||||||||||||||||||| ||| |||||||    
T  36384076 tttcttaataagtgtgaaattgtattttttgcttataaattgggacggagggagtat 36384132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 43656053 - 43655993
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||||||  |||||||||||| |||||| ||| ||| |||||||    
T  43656053 tagttttcttaataagtgtgaattaatgttttttgcttttaaattaggacggatggagtat 43655993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 49924563 - 49924623
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||||||  |||||||| |||||||||| ||| ||| |||||||    
T  49924563 tagttttcttaataagtgtgaattaatgttttttacttataaattaggacggagggagtat 49924623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 36188977 - 36188920
Alignment:
Q  327 tttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||    
T  36188977 tttcttaataagtgtgaatttgtgttttttgcttataaattgggatggagggagtata 36188920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 21654390 - 21654452
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  21654390 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatat 21654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 53020328 - 53020390
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  53020328 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatat 53020390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 55400883 - 55400944
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  55400883 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtata 55400944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 26641087 - 26641027
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  26641087 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 26641027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 32322211 - 32322152
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    |||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  32322211 ttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatat 32322152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 37324058 - 37323996
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| | | ||| |||||||||    
T  37324058 tagttttcttaataagtgtgaattagtgttttttgcttataaattagaacggagggagtatat 37323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 51309561 - 51309618
Alignment:
Q  326 ttttcttagtaattgtgaattggtgtttt-ttgcttataaattgggatggaaggagta 382  Q
    |||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||||||||    
T  51309561 ttttcttaataaatgtgaatttgtgtttttttgcttataaattgggacggaaggagta 51309618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 31126357 - 31126401
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  31126357 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 31126401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 34022744 - 34022788
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  34022744 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 34022788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 46580680 - 46580724
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  46580680 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 46580724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 16739140 - 16739081
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||| ||||||||||| ||| ||| ||||||    
T  16739140 tagttttcttaataagtgtgaattagtgtttttggcttataaattaggacggagggagta 16739081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 45347688 - 45347625
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 386  Q
    ||||||||||| ||| | |||||| ||||||||| |||||||||| ||| || |||||||||||    
T  45347688 tagttttcttaataaatatgaattagtgttttttacttataaattaggacggtaggagtatata 45347625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 46296051 - 46295990
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||||| ||| |||||||| || |||||| |||||||||| ||| ||| ||||||||    
T  46296051 tagttttcttaataagtgtgaattagtattttttacttataaattaggacggagggagtata 46295990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 47599623 - 47599659
Alignment:
Q  351 ttttttgcttataaattgggatggaaggagtatatat 387  Q
    |||||||||||||| |||||| |||||||||||||||    
T  47599623 ttttttgcttataatttgggacggaaggagtatatat 47599659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 54485292 - 54485324
Alignment:
Q  351 ttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||||||||||||||||| |||||||    
T  54485292 ttttttgcttataaattgggatggagggagtat 54485324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 44411223 - 44411163
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| |||||||||||    
T  44411223 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggaaggagtat 44411163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 35260204 - 35260265
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  35260204 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtata 35260265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 27621277 - 27621336
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  27621277 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 27621336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 37598216 - 37598278
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| |||  ||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  37598216 tagttttcttaataaccgtgaattagtgttttttgcttataaattaggacggagggagtatat 37598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 2238607 - 2238550
Alignment:
Q  325 gttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||| || ||| ||||||    
T  2238607 gttttcttaataagtgtgaatttgtgttttttgcttataaattgagacggagggagta 2238550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 24510709 - 24510652
Alignment:
Q  325 gttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| ||||||    
T  24510709 gttttattaataagtgtgaatttatgttttttgcttataaattgggatggagggagta 24510652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 25321600 - 25321539
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  25321600 tagttttctaaataagtgtgaattagtgttttttgcttataaattaggacggagggagtata 25321539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 3100100 - 3100144
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  3100100 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 3100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 11044204 - 11044248
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  11044204 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 11044248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 44052768 - 44052820
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatgga 375  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||| |||||||    
T  44052768 tagttttcttaataagtgtgaattagtattttttgcttataaattaggatgga 44052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 27752733 - 27752776
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaat 366  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||    
T  27752733 tagttttcttaataagtgtgaattagtgttttttgcttataaat 27752776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 37566511 - 37566453
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagt 381  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||    
T  37566511 tagtttttttaataagtgtgaattagtgttttttgcttataaattaggacggagggagt 37566453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 11992875 - 11992935
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| | | |||||||| ||||||||| |||||||||| ||| ||| |||||||    
T  11992875 tagttttcttaattagtgtgaattagtgttttttacttataaattaggacggagggagtat 11992935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 39187377 - 39187421
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| |||  ||||||| ||||||||||||||||||||    
T  39187377 tagttttcttaataagcgtgaattagtgttttttgcttataaatt 39187421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 35832556 - 35832616
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| |||||||    
T  35832556 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggatggagggagtat 35832616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 15858701 - 15858639
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  15858701 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggagggagtatat 15858639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 33635480 - 33635540
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  33635480 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 33635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 38071462 - 38071398
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatat 387  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||| ||||    
T  38071462 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtaaatat 38071398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 792368 - 792309
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  792368 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 21539901 - 21539960
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  21539901 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 21539960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 14565385 - 14565323
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||||    
T  14565385 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagtatat 14565323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 43075893 - 43075955
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||| ||| ||| |||||||||    
T  43075893 tagttttcttaataagtgtgaattagtattttttgcttataaattaggacggagggagtatat 43075955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 10979313 - 10979374
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 384  Q
    ||||||||||| | | |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  10979313 tagttttcttaatgagtgtgaattagtgttttttgcttataaattaggacggagggagtata 10979374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 10478322 - 10478382
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||    
T  10478322 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagtat 10478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 38549655 - 38549611
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  38549655 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 38549611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 13822777 - 13822731
Alignment:
Q  325 gttttcttagtaattgtgaattggtgttttttgcttataaattggga 371  Q
    ||||||||| ||| |||||||| || |||||||||||||||||||||    
T  13822777 gttttcttaataagtgtgaatttgtattttttgcttataaattggga 13822731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 4092155 - 4092199
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||| | ||||||||||||||||||||    
T  4092155 tagttttcttaataagtgtgaagtagtgttttttgcttataaatt 4092199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 5091552 - 5091508
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| || |||||||||||||||||    
T  5091552 tagttttcttaataagtgtgaattagtattttttgcttataaatt 5091508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 28492664 - 28492724
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||| || ||| |||||||||||||||| ||||| | |||||||    
T  28492664 tagttttcttaataagtgtgatttagtgctttttgcttataaattaggatgaatggagtat 28492724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 29514029 - 29513973
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    |||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| ||||||    
T  29514029 ttttcttaataagtgtgaattactgttttttgcttataaattaggacggagggagta 29513973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 4774 - 4834
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  4774 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 4834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 21654092 - 21654028
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatat 387  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| | | ||| |||||||||||    
T  21654092 tagttttcttaataagtgtgaattagtgttttttgcttataaattagaacggagggagtatatat 21654028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 32491078 - 32491026
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatgga 375  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| |||||||    
T  32491078 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggatgga 32491026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 43107876 - 43107816
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  43107876 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggagggagtat 43107816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 35084072 - 35084009
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgtttttt-gcttataaattgggatggaaggagtatat 385  Q
    ||||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||| |||||||||    
T  35084072 tagttttcttattaagtgtgaatttgtgtttttttgcttataaattgggacggagggagtatat 35084009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 35181335 - 35181394
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  35181335 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 35181394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 18206287 - 18206231
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    |||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  18206287 ttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 18206231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 18800735 - 18800675
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 386  Q
    |||||||| ||| |||||||| || ||||||||||||||||||||| ||| | ||||||||    
T  18800735 ttttcttaataagtgtgaatttgtattttttgcttataaattgggacggatgaagtatata 18800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 19933026 - 19932982
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  19933026 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 19932982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 47383549 - 47383609
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||  |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  47383549 tagttttcttaatatgtgtgaatttgtgttttttgcttataaattaggacggagggagtat 47383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 3157579 - 3157638
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| | |||||| |||||||||||||||||||| ||| ||| ||||||    
T  3157579 tagttttcttaataagtatgaattagtgttttttgcttataaattaggacggagggagta 3157638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 30082496 - 30082542
Alignment:
Q  325 gttttcttagtaattgtgaattggtgttttttgcttataaattggga 371  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  30082496 gttttcttaataagtgtgaatttgtgttttttgcctataaattggga 30082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 40593964 - 40594029
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatattat 392  Q
    |||||||| ||| |||||||| || ||||||||||||||||| ||| ||| ||||||| ||||||||    
T  40593964 ttttcttaataaatgtgaatttgtattttttgcttataaattaggacggagggagtat-tatattat 40594029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 22111301 - 22111244
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgtt-ttttgcttataaattgggatggaagga 379  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||| ||| |||||||    
T  22111301 tagttttcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 22111244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 29236037 - 29235980
Alignment:
Q  326 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    |||||||| | | |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  29236037 ttttcttaatgagtgtgaatttgtgttttttgcttataaattaggacggagggagtat 29235980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 40583288 - 40583345
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgtt-ttttgcttataaattgggatggaagga 379  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||| ||| |||||||    
T  40583288 tagttttcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 40583345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 2633349 - 2633298
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatgga 375  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||| ||||||||||    
T  2633349 tagttttcttaataaatgtgaattggt-tttttttcttataatttgggatgga 2633298  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 23106596 - 23106640
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| || |||||||||||||||||    
T  23106596 tagttttcttaataagtgtgaattagtattttttgcttataaatt 23106640  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 41889314 - 41889358
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| ||||||||  |||||||||||||||||||    
T  41889314 tagttttcttaataagtgtgaattaatgttttttgcttataaatt 41889358  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 44600589 - 44600633
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| || |||||||||||||||||    
T  44600589 tagttttcttaataaatgtgaattagtattttttgcttataaatt 44600633  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 48879531 - 48879575
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||||    
T  48879531 tagttttcttaataagtgtaaattagtgttttttgcttataaatt 48879575  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 10228056 - 10228116
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  10228056 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 10228116  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 5121469 - 5121410
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  5121469 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 5121410  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 12278850 - 12278894
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  12278850 tagttttcttaataagtgtgaattgatgttttttgcttataaatt 12278894  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 17721822 - 17721762
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||    
T  17721822 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagtat 17721762  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 30949279 - 30949339
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 383  Q
    ||||||| ||| ||| |||||||| || ||||||||||||||||| ||||||| |||||||    
T  30949279 tagttttgttaataagtgtgaattagtattttttgcttataaattaggatggagggagtat 30949339  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 374243 - 374302
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 382  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  374243 tagtttttttaataaatgtgaattagtgttttttgcttataaattaggacggagggagta 374302  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 21964101 - 21964147
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaattgg 369  Q
    ||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  21964101 tagttttattagtaagtgtgaattggatttttttgcttataaattgg 21964147  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 30766590 - 30766634
Alignment:
Q  323 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 367  Q
    ||||||||||| ||| |||||||| || |||||||||||||||||    
T  30766590 tagttttcttaataagtgtgaattagtattttttgcttataaatt 30766634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 32882702 - 32882642
Alignment:
Q  325 gttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 385  Q
    ||||||||| ||| |||||||| |  ||||||||||||||||||| ||||| ||| |||||    
T  32882702 gttttcttaataagtgtgaatttgaattttttgcttataaattggaatggagggaatatat 32882642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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