View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17114_high_6 (Length: 358)

Name: NF17114_high_6
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17114_high_6
NF17114_high_6
[»] chr8 (11 HSPs)
chr8 (1-352)||(15813015-15813370)
chr8 (1-345)||(15799629-15799981)
chr8 (1-345)||(15805174-15805513)
chr8 (1-345)||(15764193-15764532)
chr8 (1-345)||(15697121-15697474)
chr8 (1-335)||(15703510-15703843)
chr8 (1-339)||(15711792-15712136)
chr8 (204-345)||(15722543-15722684)
chr8 (206-326)||(15692659-15692779)
chr8 (1-75)||(15692451-15692525)
chr8 (1-85)||(15722342-15722426)
[»] chr3 (10 HSPs)
chr3 (148-345)||(3080388-3080585)
chr3 (149-321)||(4547947-4548119)
chr3 (148-321)||(3094849-3095022)
chr3 (1-73)||(3080669-3080741)
chr3 (1-73)||(3095106-3095178)
chr3 (207-330)||(3102377-3102500)
chr3 (9-73)||(4547785-4547849)
chr3 (3-73)||(3123011-3123081)
chr3 (207-291)||(3122544-3122628)
chr3 (3-73)||(3103480-3103550)
[»] chr2 (3 HSPs)
chr2 (3-73)||(2704312-2704382)
chr2 (223-288)||(2662487-2662552)
chr2 (224-294)||(2672478-2672548)
[»] chr4 (3 HSPs)
chr4 (224-288)||(36370555-36370619)
chr4 (227-288)||(36399760-36399821)
chr4 (224-288)||(36435825-36435889)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 15813015 - 15813370
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactata----taaaatcaacagaacaatgt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||| ||||||||||    
T  15813015 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatagcgtattctggagccatgtatccactatatatataaaatcaagagaacaatgt 15813114  T
Q  97 cagttgtgtatcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgt 196  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15813115 cagttgtgaatcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacat 15813214  T
Q  197 tgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggatta 296  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813215 tgatctttttcaaatgcccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggatta 15813314  T
Q  297 ctctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcctatgata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15813315 ctctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcctttgata 15813370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15799629 - 15799981
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatata----aaatcaacagaacaatgt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    ||||||||||||||   |    
T  15799629 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatagcgtattcaggagccatgtatccactatatatataaaatcaacagaacaccat 15799728  T
Q  97 cagttgtgta---tcatgtaaatttttctaacatatttgttttaaaagagttttcaataa---cccgtactaggtgccaataactctttttgtctttgta 190  Q
    |||||||| |   |||||| || |||||||   ||||||||| |||| ||| | ||||||   | | ||||||||||||| |||||||||||| |||||     
T  15799729 cagttgtgaaaaatcatgtgaaattttctac--tatttgtttgaaaatagtgtccaataataacacatactaggtgccaaaaactctttttgtttttgtc 15799826  T
Q  191 tgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgt 290  Q
    |||| ||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15799827 tgacattggtctttatcaaatgttcttgccaatccaaaatctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctctgt 15799926  T
Q  291 ggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 345  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||| |||||    
T  15799927 ggattactctaagtcgagaatcctcatgaaggtatagcaatcctcttgcaattcc 15799981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15805174 - 15805513
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatataaaatcaacagaacaatgtcagt 100  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| ||   || | |||||||    
T  15805174 ctccaaagctaaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccactgtataaaattaa---aatactgtcagt 15805270  T
Q  101 tgtgtatcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgat 200  Q
    |||| ||||||| ||  ||| |||  |||||| ||| ||| | ||| ||||||  | ||||||||||||| |||||||| ||| |||||  | | |||||    
T  15805271 tgtgaatcatgtgaaaatttataa--tatttgctttgaaaaactttccaataatgcttactaggtgccaaaaactctttctgtttttgtcgggcattgat 15805368  T
Q  201 ctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactct 300  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15805369 ctttttcaaatctccttgctaatccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctctgtggattactct 15805468  T
Q  301 aagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 345  Q
    |||| |||||||||||||||||||||| |||||| |||| |||||    
T  15805469 aagtcgagaatcctcatgaaggtatagcagtccttttgcaattcc 15805513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15764193 - 15764532
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatataaaatcaacagaacaatgtcagt 100  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| |||| |||||| | ||| |    
T  15764193 ctccaaaactgaaaacatcggatttcaccgaaaataacccagccatagcatattctggagccatgtatccactataaaaagtcaatagaacattttcaat 15764292  T
Q  101 tgtgtatcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgat 200  Q
    |||| ||||||| || | |||| | ||    ||||||||| ||||   | |||| | |||||||| || |||||||| ||||| ||| |  ||| |||||    
T  15764293 tgtgaatcatgtgaaatcttctgatat----gttttaaaa-agttgcaactaacgcttactaggttccgataactctatttgtttttcttggacattgat 15764387  T
Q  201 ctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactct 300  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  15764388 ctttttcaaatgtccttgctaacccaaaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcagatccctgtggattactct 15764487  T
Q  301 aagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 345  Q
    |||| |||||||||||||||||||||| |||||| |||| |||||    
T  15764488 aagtcgagaatcctcatgaaggtatagcagtccttttgcaattcc 15764532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15697121 - 15697474
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatataaaatcaacagaacaatgtcag- 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | |||| |||| || ||| ||||||     
T  15697121 ctccaaagctgaaaacatcggatttcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaagtcaaaagtacattgtcaga 15697220  T
Q  100 -------ttgtgtatcatgtaaatttttctaacatatttgttttaaaa--gagttttcaataacc-cgtactaggtgccaataactctttttgtctttgt 189  Q
           ||||| || |||| || ||||||||  ||||||||| ||||  |||||  |||||| | | |||||||||||||||||||||||||| |||||    
T  15697221 ctcagagttgtgaattatgtgaacttttctaa--tatttgtttgaaaatagagttgccaataaacacttactaggtgccaataactctttttgtttttgt 15697318  T
Q  190 atgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctg 289  Q
     |||| |||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||     
T  15697319 ctgactttgacctttttcaaatttccttgctaatccaaaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctcta 15697418  T
Q  290 tggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 345  Q
    ||||| ||||||||| ||||||| |  |||||||||| ||||||||||||||||||    
T  15697419 tggataactctaagtcgagaatcttggtgaaggtataaaagtcctcttgcgattcc 15697474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 15703510 - 15703843
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatataaaatcaacagaacaatgtcagt 100  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| || | ||||||  ||||| || ||| |||    
T  15703510 ctccaaagctaaaaacatcagatttcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaaatgcacagatcactgttagt 15703609  T
Q  101 tgtgtatcatgtaaatttttctaacatatttgttttaaaa-gagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttga 199  Q
    || | || ||||||| ||||||||  |||||||||||||| ||||| |||||||| | | |||||| || |||||||||||||| | ||| |||| |||     
T  15703610 tgcgaataatgtaaaattttctaa--tatttgttttaaaaagagttgtcaataacacttgctaggttcccataactctttttgtttctgtctgactttgg 15703707  T
Q  200 tctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactc 299  Q
     |||| |||||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||  ||||| || ||||| ||||| ||||    
T  15703708 cctttctcaaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatggataactc 15703807  T
Q  300 taagtggagaatcctcatgaaggtatagaagtcctc 335  Q
    ||||| |||||||||  |||||||||| ||||||||    
T  15703808 taagtcgagaatcctggtgaaggtataaaagtcctc 15703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 15711792 - 15712136
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatataaaatcaacagaacaatgtcagt 100  Q
    |||||||||| || ||||| || ||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||| |||||| |||||||    
T  15711792 ctccaaagctaaatacatcagacttcactgaaaataacccagccatagcatattctggagccatgtatccgctatttaaaatcaatagaacactgtcagt 15711891  T
Q  101 tgtgtatcatgtaaatttttctaacatatttgt----tttaaa--agagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgac 194  Q
    |||| || || | || ||||||   |  ||| |    | ||||  |||||| || || || | |||||||| || || ||||||||||| | ||| ||||    
T  15711892 tgtgaataatatgaagttttctgttacttttttcatatataaagaagagttgtcgatgacacttactaggttcccatgactctttttgtttctgtctgac 15711991  T
Q  195 gttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggat 294  Q
     |||  ||||||||||  | ||||| |||||||| || ||||||||||||||||||||||| |||| ||| |||||||| ||||||| |||||| |||||    
T  15711992 tttggcctttttcaaaccttcttgccaatccaaagtctgatatttttggattcatttcatcgtccaaaagtacattgcttgctttcatatctctatggat 15712091  T
Q  295 tactctaagtggagaatcctcatgaaggtatagaagtcctcttgc 339  Q
     ||||||||| |||||||||| ||||| ||||  |||||||||||    
T  15712092 aactctaagtcgagaatcctcgtgaagatataacagtcctcttgc 15712136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 345
Target Start/End: Original strand, 15722543 - 15722684
Alignment:
Q  204 tttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaag 303  Q
    |||||||| | ||||| || |||||||| |||||||||||||||||||||   ||||||||||| ||||| |||||||||||||  ||||| ||||||||    
T  15722543 tttcaaattttcttgccaaaccaaaatctgatatttttggattcatttcactgtccagaagaacgttgctggctttcagatctcgatggatgactctaag 15722642  T
Q  304 tggagaatcctcatgaaggtatagaagtcctcttgcgattcc 345  Q
    | |||| |||||||| |||||| | |||||||||||||||||    
T  15722643 tcgagagtcctcatgcaggtattgtagtcctcttgcgattcc 15722684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 15692659 - 15692779
Alignment:
Q  206 tcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtg 305  Q
    ||||||| |||||| ||||||||||| |||||||| ||||||||||||| ||| |  ||||||||||| ||||| |||||||| || |||||||| | |     
T  15692659 tcaaatgcccttgccaatccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaattactcttaatc 15692758  T
Q  306 gagaatcctcatgaaggtata 326  Q
     ||| |||||||| |||||||    
T  15692759 tagagtcctcatggaggtata 15692779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15692451 - 15692525
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactat 75  Q
    ||||||||||||| ||||||| |||||| |||||||  ||  |||| ||||||||||| ||||||||||||||||    
T  15692451 ctccaaagctgaatacatcggttttcacagaaaatactccttccattgcgtattctggtgccatgtatccactat 15692525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15722342 - 15722426
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccactatataaaatcaa 85  Q
    ||||||||||  ||||||||||||| |||||||| |  ||| |||| || |||||||||||||||||||| || | |||||||||    
T  15722342 ctccaaagctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaa 15722426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 345
Target Start/End: Complemental strand, 3080585 - 3080388
Alignment:
Q  148 caataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattc 247  Q
    ||||||| | ||||| ||||| | ||||||| |||| |||   |||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3080585 caataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttggattc 3080486  T
Q  248 atttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 345  Q
    || || | ||| |  |||||||| || ||||| || ||||| |||||||||||||||  ||| || |||||||||||||  |||||| |||| |||||    
T  3080485 atctcttgatctaatagaacattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaaggtataagagtccttttgcaattcc 3080388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 321
Target Start/End: Original strand, 4547947 - 4548119
Alignment:
Q  149 aataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattca 248  Q
    |||||| | ||||| ||||| |||| |||| |||| |||   |||| |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4547947 aataacacatactatgtgcccataattcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca 4548046  T
Q  249 tttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaag 321  Q
    | || | ||| | ||||||||| || ||||| || ||||| |||||||||||||||  ||| || ||||||||    
T  4548047 tctcttgatctaaaagaacattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaag 4548119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 321
Target Start/End: Complemental strand, 3095022 - 3094849
Alignment:
Q  148 caataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattc 247  Q
    ||||||| | ||||| ||||| | ||||||| |||| |||   |||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3095022 caataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttggattc 3094923  T
Q  248 atttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaag 321  Q
    || || | ||| |  |||||||| || ||||| || ||||| ||||||||||| |||  ||| || ||||||||    
T  3094922 atctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaag 3094849  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3080741 - 3080669
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccact 73  Q
    ||||||||||||||||||| |||||||| ||| |||||||  |||| ||||| ||||| ||||||||||||||    
T  3080741 ctccaaagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccact 3080669  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3095178 - 3095106
Alignment:
Q  1 ctccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccact 73  Q
    ||||||||||||||||||| |||||||| ||| |||||||  |||| ||||| ||||| ||||||||||||||    
T  3095178 ctccaaagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccact 3095106  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 330
Target Start/End: Complemental strand, 3102500 - 3102377
Alignment:
Q  207 caaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtgg 306  Q
    ||||||| ||||| | ||||||||| || ||||||||||||||||| | ||| |  |||| |||||| |||||||| |||||||| || ||||| ||       
T  3102500 caaatgttcttgcaagtccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctgagcct 3102401  T
Q  307 agaatcctcatgaaggtatagaag 330  Q
    ||| ||||||||||| ||||||||    
T  3102400 agagtcctcatgaagatatagaag 3102377  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 4547785 - 4547849
Alignment:
Q  9 ctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccact 73  Q
    ||||||||||| | |||||||||| |||||||  |||| |||||||||||||||||||| |||||    
T  4547785 ctgaaaacatctgttttcactgaatataacccttccatagcgtattctggagccatgtaaccact 4547849  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 3123081 - 3123011
Alignment:
Q  3 ccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccact 73  Q
    ||||||||||||||||| || ||||||||||| || ||  | || || |||||||||||||||||||||||    
T  3123081 ccaaagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccatgtatccact 3123011  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 3122628 - 3122544
Alignment:
Q  207 caaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtg 291  Q
    ||||||| ||||||| |||||| || || ||||||||||||||||||| ||| |  | || |||||| |||||||| ||||||||    
T  3122628 caaatgttcttgctagtccaaagtctgaaatttttggattcatttcatgatctaacaaaatattgctggctttcaggtctctgtg 3122544  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 3103550 - 3103480
Alignment:
Q  3 ccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccact 73  Q
    ||||||||||||||||| || || |||||||| || ||  |||| || |||||||||||||| ||||||||    
T  3103550 ccaaagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccact 3103480  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 2704312 - 2704382
Alignment:
Q  3 ccaaagctgaaaacatcggatttcactgaaaataacccagccatcgcgtattctggagccatgtatccact 73  Q
    |||||||| |||||||| |||||| ||||||| |||||  |||| ||||||||||||| ||| ||||||||    
T  2704312 ccaaagctaaaaacatctgatttctctgaaaacaacccctccattgcgtattctggagacatatatccact 2704382  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 2662487 - 2662552
Alignment:
Q  223 tccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 288  Q
    |||||| ||||| |||||||||||||||||  |||| | |||||||||||| ||||| ||||||||    
T  2662487 tccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctct 2662552  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 2672548 - 2672478
Alignment:
Q  224 ccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggat 294  Q
    |||||||| ||||| |||||||||||||| | ||| || ||||||||||| || || ||||| ||||||||    
T  2672548 ccaaaatctgatatctttggattcatttctttatcaagtagaacattgcttgccttgagatccctgtggat 2672478  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 36370619 - 36370555
Alignment:
Q  224 ccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 288  Q
    |||||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  36370619 ccaaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 36370555  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 36399821 - 36399760
Alignment:
Q  227 aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 288  Q
    ||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  36399821 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 36399760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 36435889 - 36435825
Alignment:
Q  224 ccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 288  Q
    |||||||| || ||||| ||||||||| || |||| || ||||||||||| ||||| ||||||||    
T  36435889 ccaaaatctgagattttgggattcattgcagcatcaaggagaacattgctggcttttagatctct 36435825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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