View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17114_high_7 (Length: 339)
Name: NF17114_high_7
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17114_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 32000360 - 32000021
Alignment:
| Q |
1 |
ctattactatgtatgttcttgcattttcacaatcaatatttatatcaacaataaaatggaaagttttgaaattaaagttttgaccatgctctttaatttg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32000360 |
ctattactatgtgtgttcttgcattttcacaatcaatatttatatcaacaataaaatggaaagttttgaaattaaagttttgaccatggtctttaatttg |
32000261 |
T |
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| Q |
101 |
tattgtactacaatccttactcaccatgtgcaacaattcatttatt-ttttaccttaccaattcattacacnnnnnnnaccttagcaattcatatattat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
32000260 |
tattgtactacaatccttactcaccatgtgcaacaatttatttatttttttaccttagcaattcattacacttcttttaccttagcaattcatatattat |
32000161 |
T |
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| Q |
200 |
ttttgtagtgctcannnnnnnaattttggattatcctttgttattgatcacaggtttctaaagtatttcaaagtcctgaatctaaatttgttgctaagca |
299 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32000160 |
ttttgtagtgcacatttttttaattttggattatcctttgttattgatcacaggtttctaaagtatttcaaagtcctgaatctaaatttgttgctaagca |
32000061 |
T |
|
| Q |
300 |
ttggataattacttcaggtaaagacatggaatgccggttg |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32000060 |
ttggataattacttcaggtaaagacatggaatgccggttg |
32000021 |
T |
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