View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17114_low_1 (Length: 864)

Name: NF17114_low_1
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17114_low_1
NF17114_low_1
[»] chr3 (6 HSPs)
chr3 (16-402)||(13824749-13825135)
chr3 (520-659)||(13825145-13825284)
chr3 (754-849)||(13825379-13825474)
chr3 (550-659)||(54315072-54315176)
chr3 (767-803)||(55150979-55151015)
chr3 (427-480)||(14336897-14336950)
[»] chr7 (6 HSPs)
chr7 (523-659)||(11381466-11381601)
chr7 (542-658)||(11404890-11405005)
chr7 (523-646)||(3940197-3940319)
chr7 (767-805)||(10554749-10554787)
chr7 (767-805)||(31593958-31593996)
chr7 (427-508)||(27866809-27866890)
[»] chr2 (7 HSPs)
chr2 (497-659)||(26172978-26173133)
chr2 (427-508)||(20726626-20726707)
chr2 (613-658)||(15737998-15738043)
chr2 (429-480)||(1481055-1481106)
chr2 (757-810)||(29902389-29902443)
chr2 (333-366)||(26007173-26007206)
chr2 (430-507)||(34456935-34457012)
[»] scaffold0097 (1 HSPs)
scaffold0097 (427-508)||(30455-30536)
[»] scaffold0013 (2 HSPs)
scaffold0013 (566-656)||(62491-62580)
scaffold0013 (755-812)||(62678-62735)
[»] scaffold0079 (2 HSPs)
scaffold0079 (429-508)||(46828-46907)
scaffold0079 (757-812)||(45782-45838)
[»] chr8 (4 HSPs)
chr8 (429-508)||(28637160-28637239)
chr8 (561-659)||(2869979-2870077)
chr8 (763-805)||(8316609-8316651)
chr8 (613-658)||(18700954-18700999)
[»] chr4 (3 HSPs)
chr4 (429-508)||(16345954-16346033)
chr4 (430-508)||(35430497-35430575)
chr4 (757-812)||(16347023-16347079)
[»] chr1 (2 HSPs)
chr1 (767-805)||(50915022-50915060)
chr1 (767-801)||(18243098-18243132)
[»] chr5 (2 HSPs)
chr5 (768-805)||(24169670-24169707)
chr5 (767-805)||(37980205-37980243)
[»] scaffold0688 (1 HSPs)
scaffold0688 (767-805)||(5567-5605)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 13824749 - 13825135
Alignment:
Q  16 tgatagagaagaagaccttagatttatgaagattaagtttttcgcatgaatcgtcacaaaattctttcaaatcttaacaaatcataacaatttggtcaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||| |||||| ||||||||    
T  13824749 tgatagagaagaagaccttagatttatgaagattaagttttttgcctgaatcgtcacaaaattctttcaaatctgaataaatcaaaacaatctggtcaaa 13824848  T
Q  116 aaagggaaaggccccccataactaaaacaagattgttaaagagtcccactttggttgaaagctgttttgaacaggtgtttataagtctggacaatcttat 215  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||     
T  13824849 aaagggaaaggcccccgataactaaaacaagaatgttaaa-agtcccactttggttgaaagctgctttgaacaagtgtttataagtctggacaatcttac 13824947  T
Q  216 attaaaagtcgattttaagggattgtgttaagaccaaccacaaattttaagatgatatcagattctcctttgagatttattggaccacttgctctcagaa 315  Q
     | |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||| |||| |||||| ||||||||||||||||    
T  13824948 ctcaaaagtcggttttaaggggttgtgttaagaccaaccacaaattctaagatgatatcacatcctcctttaagatctattgggccacttgctctcagaa 13825047  T
Q  316 taccattaccaaccacccatcatttatatctacacaccaagtccaataatg-tgggtgtatagaggtgtattaaagagtcccacattg 402  Q
     |||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  13825048 aaccattaccaaccaccaaccatttatatctacgcaccaagtccaataatgttgggtgtataaaggtgtattaaagagtcccacattg 13825135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 520 - 659
Target Start/End: Original strand, 13825145 - 13825284
Alignment:
Q  520 gcggtagttagctgctgctacgttcctggttcaatttcgagcagctttctccttccatttttccccacatttgtccatgttctatacataccattttgaa 619  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13825145 gcggtagttagctgctactacgttcctggttcaatttccagcagctttctccttccatttttccccacatttgtccatgttttatacataccattttgaa 13825244  T
Q  620 caaattttttcactctttttcatccaattgcaaattcatc 659  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13825245 caaattttttcactctttttcatccaattgcaaattcatc 13825284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 754 - 849
Target Start/End: Original strand, 13825379 - 13825474
Alignment:
Q  754 gtcacaaggtacaaaaatgtaataataatacatcatcatcatcatagtcaaactgtacacnnnnnnncctaatgataatcaaccctactgcctatg 849  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  13825379 gtcacaaggtacgaaaatgtaataataatacatcatcatcatcatagtcaaactgtacataaaaaaacctaatgataatcaaccctactgcctatg 13825474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 659
Target Start/End: Original strand, 54315072 - 54315176
Alignment:
Q  550 tcaatttcgagcagctttctccttccatttttccccacatttgtccatgttctatacataccattttgaacaaattttttcactctttttcatccaattg 649  Q
    |||||||| ||| ||||||||||||||||||||||||||||||  | |||| || ||||||    || ||||||||||||||||| ||||||| |||||     
T  54315072 tcaatttccagcggctttctccttccatttttccccacatttgaacttgttttacacatac----ttaaacaaattttttcactc-ttttcattcaattt 54315166  T
Q  650 caaattcatc 659  Q
    ||||||||||    
T  54315167 caaattcatc 54315176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 767 - 803
Target Start/End: Complemental strand, 55151015 - 55150979
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagtca 803  Q
    ||||||| |||||||||||||||||||||||||||||    
T  55151015 aaaatgtcataataatacatcatcatcatcatagtca 55150979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 14336897 - 14336950
Alignment:
Q  427 tttgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaatac 480  Q
    ||||| |||||||||| | |||| | ||| ||||||||||||||||||||||||    
T  14336897 tttgacaattgcttttttaacatcataaacttcctaaaaacacaaataaaatac 14336950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 523 - 659
Target Start/End: Original strand, 11381466 - 11381601
Alignment:
Q  523 gtagttagctgctgctacgttcctggttcaatttcgagcagctttctccttccatttttccccacatttgtccatgttctatacataccattttgaacaa 622  Q
    ||||||| || ||| | |||||||||||||| ||| |  |||||||||||||| ||||||||||| ||||  |||||| ||||||||| ||||||||||     
T  11381466 gtagttaactactgttgcgttcctggttcaaattccaatagctttctccttccctttttccccacgtttgaacatgtt-tatacatactattttgaacac 11381564  T
Q  623 attttttcactctttttcatccaattgcaaattcatc 659  Q
    |||||||||||| |||||||||||||  |||||||||    
T  11381565 attttttcactcattttcatccaatttaaaattcatc 11381601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 542 - 658
Target Start/End: Original strand, 11404890 - 11405005
Alignment:
Q  542 ttcctggttcaatttcgagcagctttctccttccatttttccccacatttgtccatgttctatacataccattttgaacaaattttttcactctttttca 641  Q
    |||||||||||| ||| |  |||||||||||||| ||||||||||| ||||  |||||| ||||||||| |||||||||| |||||||||||| ||||||    
T  11404890 ttcctggttcaaattccaatagctttctccttccctttttccccacgtttgaacatgtt-tatacatactattttgaacacattttttcactcattttca 11404988  T
Q  642 tccaattgcaaattcat 658  Q
    ||||||| |||||||||    
T  11404989 tccaatttcaaattcat 11405005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 523 - 646
Target Start/End: Complemental strand, 3940319 - 3940197
Alignment:
Q  523 gtagttagctgctgctacgttcctggttcaatttcgagcagctttctccttccatttttccccacatttgtccatgttctatacatacca-ttttgaaca 621  Q
    ||||||| || || |||||||| |||||||||||  |||| |||||||||||| |||||||||||||| |  |||||  ||||||||| | ||||||| |    
T  3940319 gtagttaactactactacgttcttggttcaattttcagcaactttctccttccctttttccccacattcgaacatgt--tatacatactatttttgaaaa 3940222  T
Q  622 aattttttcactctttttcatccaa 646  Q
     ||| ||||| || |||||||||||    
T  3940221 cattatttcaatcattttcatccaa 3940197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 767 - 805
Target Start/End: Complemental strand, 10554787 - 10554749
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  10554787 aaaatgtcataataatacatcatcatcatcatagtcaaa 10554749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 767 - 805
Target Start/End: Complemental strand, 31593996 - 31593958
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  31593996 aaaatgtcataataatacatcatcatcatcatagtcaaa 31593958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 508
Target Start/End: Original strand, 27866809 - 27866890
Alignment:
Q  427 tttgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    ||||||| |||||||||||| || | || | |||||||||||||| |||||||   |  ||||||||| |||||||||||||    
T  27866809 tttgaaagttgcttttctgaaatcaaaagtctcctaaaaacacaagtaaaatatttaaatgccctcagcggtagttaactac 27866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 497 - 659
Target Start/End: Complemental strand, 26173133 - 26172978
Alignment:
Q  497 gtagttaactactactacaacctgcggtagttagctgctgctacgttcctggttcaatttcgagcagctttctccttccatttttccccacatttgtcca 596  Q
    ||||||||||||  ||||| || ||||| |||| |||||||| ||||| |||||||||||| ||||||  ||||||||||||||| ||||||||||  ||    
T  26173133 gtagttaactaccgctacagccagcggttgttaactgctgctgcgttcttggttcaatttctagcagc--tctccttccattttttcccacatttgaaca 26173036  T
Q  597 tgttctatacataccattttgaacaaattttttcactctttttcatccaattgcaaattcatc 659  Q
    |||| || ||||||    || ||||| ||||||||||| ||||||||||||| ||||||||||    
T  26173035 tgttttacacatac----ttcaacaatttttttcactc-ttttcatccaatttcaaattcatc 26172978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 427 - 508
Target Start/End: Complemental strand, 20726707 - 20726626
Alignment:
Q  427 tttgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    |||||||||||||||| ||||| |||||| |||||||||| |||| ||||||| |||||| || ||||||||||||||||||    
T  20726707 tttgaaaattgcttttgtgacaaaagaaacttcctaaaaatacaagtaaaatatcaatttaccgtcagaggtagttaactac 20726626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 658
Target Start/End: Original strand, 15737998 - 15738043
Alignment:
Q  613 ttttgaacaaattttttcactctttttcatccaattgcaaattcat 658  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||    
T  15737998 ttttaaacaaaatttttcactctttttcatccaatttcaaattcat 15738043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 1481055 - 1481106
Alignment:
Q  429 tgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaatac 480  Q
    |||||||||||||| |||||||| ||| ||| |||| |||||||||||||||    
T  1481055 tgaaaattgcttttttgacataaaaaacttcgtaaagacacaaataaaatac 1481106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 757 - 810
Target Start/End: Complemental strand, 29902443 - 29902389
Alignment:
Q  757 acaaggtacaaaa-atgtaataataatacatcatcatcatcatagtcaaactgta 810  Q
    ||||||||| ||| |||| |||||||||||||| |||||||||||||||| ||||    
T  29902443 acaaggtacgaaacatgtcataataatacatcaccatcatcatagtcaaaatgta 29902389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 26007173 - 26007206
Alignment:
Q  333 catcatttatatctacacaccaagtccaataatg 366  Q
    ||||||||||||||||||||||| ||||||||||    
T  26007173 catcatttatatctacacaccaaatccaataatg 26007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 507
Target Start/End: Original strand, 34456935 - 34457012
Alignment:
Q  430 gaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaacta 507  Q
    ||||||||||||| |||||||| ||| ||  |||| |||||| ||||||||  |  ||||||||| ||||||||||||    
T  34456935 gaaaattgcttttttgacataaaaaactttataaagacacaagtaaaatacttaaatgccctcagcggtagttaacta 34457012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 427 - 508
Target Start/End: Complemental strand, 30536 - 30455
Alignment:
Q  427 tttgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    |||||||||||||||| ||||| |||||| |||||||||| |||| ||||||| |||||| || ||||||||||||||||||    
T  30536 tttgaaaattgcttttgtgacaaaagaaacttcctaaaaatacaagtaaaatatcaatttaccgtcagaggtagttaactac 30455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 566 - 656
Target Start/End: Original strand, 62491 - 62580
Alignment:
Q  566 ttctccttccatttttccccacatttgtccatgttctatacataccattttgaacaaattttttcactctttttcatccaattgcaaattc 656  Q
    |||||||||| ||||||||||||||||  | |||| ||||||||||||||| |||| ||||||||| || ||||||||||||| |||||||    
T  62491 ttctccttccctttttccccacatttgaacttgtt-tatacataccattttaaacatattttttcaatcattttcatccaatttcaaattc 62580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 812
Target Start/End: Original strand, 62678 - 62735
Alignment:
Q  755 tcacaaggtacaaaaatgtaataataatacatcatcatcatcatagtcaaactgtaca 812  Q
    ||||||||||| ||||||| |||||||||||||| || || |||||||||| ||||||    
T  62678 tcacaaggtacgaaaatgtcataataatacatcaccagcaccatagtcaaaatgtaca 62735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 508
Target Start/End: Complemental strand, 46907 - 46828
Alignment:
Q  429 tgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    ||||||||||| ||||||||| |||| | |||||| ||||||| |||||||||||||||| ||||  |||||||||||||    
T  46907 tgaaaattgctcttctgacattagaactgtcctaataacacaagtaaaataccaatttgctctcaacggtagttaactac 46828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 812
Target Start/End: Complemental strand, 45838 - 45782
Alignment:
Q  757 acaaggtacaaaa-atgtaataataatacatcatcatcatcatagtcaaactgtaca 812  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||||||||| ||||||    
T  45838 acaaggtacgaaacatgtaataataatacatcaccatcgtcatagtcaaaatgtaca 45782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 508
Target Start/End: Original strand, 28637160 - 28637239
Alignment:
Q  429 tgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    ||||||||||||||||||||| |||||| |||||| ||||||  |||||||||||||||| ||||  || ||||||||||    
T  28637160 tgaaaattgcttttctgacattagaaatatcctaataacacaggtaaaataccaatttgctctcaacggcagttaactac 28637239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 659
Target Start/End: Original strand, 2869979 - 2870077
Alignment:
Q  561 cagctttctccttccatttttccccacatttgtccatgttctatacataccattttgaacaaat-tttttcactctttttcatccaattgcaaattcatc 659  Q
    ||||||| |||||||  ||| |||||||||||  |||||| ||||||||  |||||||||| || |||||||||| ||||||||||||| ||||||||||    
T  2869979 cagctttttccttcccgtttcccccacatttgatcatgtt-tatacataatattttgaacacatgtttttcactcattttcatccaatttcaaattcatc 2870077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 805
Target Start/End: Original strand, 8316609 - 8316651
Alignment:
Q  763 tacaaaaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  8316609 tacaaaaatgtcataataatacattatcatcatcatagtcaaa 8316651  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 658
Target Start/End: Original strand, 18700954 - 18700999
Alignment:
Q  613 ttttgaacaaattttttcactctttttcatccaattgcaaattcat 658  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||    
T  18700954 ttttaaacaaaatttttcactctttttcatccaatttcaaattcat 18700999  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 508
Target Start/End: Original strand, 16345954 - 16346033
Alignment:
Q  429 tgaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    ||||||||||| ||||||||| |||| | |||||| ||||||| |||||||||||||||| ||||  |||||||||||||    
T  16345954 tgaaaattgctcttctgacattagaactgtcctaataacacaagtaaaataccaatttgctctcaacggtagttaactac 16346033  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 508
Target Start/End: Original strand, 35430497 - 35430575
Alignment:
Q  430 gaaaattgcttttctgacataagaaatttcctaaaaacacaaataaaataccaatttgccctcagaggtagttaactac 508  Q
    ||||||||||||| |||||||  ||||||| |||| |||||| ||||||||   | ||||||||| |||||||||||||    
T  35430497 gaaaattgcttttttgacatagaaaatttcataaagacacaagtaaaatacatttatgccctcagcggtagttaactac 35430575  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 812
Target Start/End: Original strand, 16347023 - 16347079
Alignment:
Q  757 acaaggtacaaaa-atgtaataataatacatcatcatcatcatagtcaaactgtaca 812  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||||||||| ||||||    
T  16347023 acaaggtacgaaacatgtaataataatacatcaccatcgtcatagtcaaaatgtaca 16347079  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 767 - 805
Target Start/End: Complemental strand, 50915060 - 50915022
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50915060 aaaatgtaataataatacatcatcatcatcatagtcaaa 50915022  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 801
Target Start/End: Complemental strand, 18243132 - 18243098
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagt 801  Q
    ||||||| |||||||||||||||||||||||||||    
T  18243132 aaaatgtcataataatacatcatcatcatcatagt 18243098  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 805
Target Start/End: Complemental strand, 24169707 - 24169670
Alignment:
Q  768 aaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24169707 aaatgtcataataatacatcatcatcatcatagtcaaa 24169670  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 805
Target Start/End: Original strand, 37980205 - 37980243
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  37980205 aaaatgtcataataatacatcattatcatcatagtcaaa 37980243  T

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Target: scaffold0688 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 805
Target Start/End: Complemental strand, 5605 - 5567
Alignment:
Q  767 aaaatgtaataataatacatcatcatcatcatagtcaaa 805  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  5605 aaaatgtcataataatacatcatcatcatcataatcaaa 5567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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