View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17114_low_10 (Length: 249)
Name: NF17114_low_10
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17114_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48642328 - 48642089
Alignment:
| Q |
1 |
aggttgacatgagagaaaccattgcatcggcagattctggtccatcattattcacacttggtataatgttatcgggagatacaaaatttacaaactcttt |
100 |
Q |
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| T |
48642328 |
aggttgacatgagagaaaccattgcatcggcagattctggtccatcattattcacacttggtataatgttatcgggagatacaaaatttacaaactcttt |
48642229 |
T |
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| Q |
101 |
gagttctgtaaagctgcaatgctcactgtaaggaacctcatacctgataaaaaagaaaacatcagttactaaatagctaaacaaacttaatgaaagcgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48642228 |
gagttctgtaaagctgcaatgctcactgtaaggaacctcatacctgataaaaaagaaaacatcagttactaaatagctaaacaaacttaatgaaagcgag |
48642129 |
T |
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| Q |
201 |
caaactctttcaaacaacatttgtgcccccattagtatta |
240 |
Q |
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| T |
48642128 |
caaactctttcaaacaacctttgtgcccccattagtatta |
48642089 |
T |
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