View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17114_low_11 (Length: 243)
Name: NF17114_low_11
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17114_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 7756078 - 7755865
Alignment:
| Q |
11 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctacaattttacacata |
110 |
Q |
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| T |
7756078 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctacaattttacacata |
7755979 |
T |
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| Q |
111 |
aacctcaaaactcaaaattaaaacttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcgga |
210 |
Q |
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| T |
7755978 |
aacctcaaaactcaaaatt-aaacttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcgga |
7755880 |
T |
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| Q |
211 |
acacgctactctttc |
225 |
Q |
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| T |
7755879 |
acacgctactctttc |
7755865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7840195 - 7840117
Alignment:
| Q |
11 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaac |
89 |
Q |
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| T |
7840195 |
catcatcatgtagaccggttcattgtgatcccgctttcttctgacttttgaagctccacacttgatttaaaactcaaac |
7840117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 7763398 - 7763325
Alignment:
| Q |
148 |
tcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactc |
221 |
Q |
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| T |
7763398 |
tcatcaatggcgaatcacaatgattatttcacacacgacatatttctgagtttcagaggcggaactcgctactc |
7763325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 7840050 - 7839996
Alignment:
| Q |
167 |
acgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactc |
221 |
Q |
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||||||| ||||||||||| ||||| || |||||||||||| |||| |||||||| |
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| T |
7840050 |
acgaagacttcactcacgacgttttcctcagtttcagaggcagaactcgctactc |
7839996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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