View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17114_low_12 (Length: 239)
Name: NF17114_low_12
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17114_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15812665 - 15812446
Alignment:
| Q |
1 |
ctcaagtttctaatatatccatattcgtttgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccacnnnnnnncgtat |
100 |
Q |
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| T |
15812665 |
ctcaagtttctaa-atatccatattcgtttgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccacaaaaaaacgtat |
15812567 |
T |
|
| Q |
101 |
gttgagagtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctag |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15812566 |
gttgagagtgaagtcatgaagtgtattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctag |
15812467 |
T |
|
| Q |
201 |
ggagtgacacagtagaccttc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15812466 |
ggagtgacacagtagaccttc |
15812446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15799265 - 15799046
Alignment:
| Q |
1 |
ctcaagtttctaatatatccatattcgtttgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccacnnnnnnncgtat |
100 |
Q |
| |
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||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| | || |
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| T |
15799265 |
ctcaagtgtctaa-atatccatatttgtatgcagacttggaaactctggtgtgaagggaaatgtttggaattaatcgatccattccaccaaaaaacatac |
15799167 |
T |
|
| Q |
101 |
gttgagagtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctag |
200 |
Q |
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| T |
15799166 |
attgaaagtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctag |
15799067 |
T |
|
| Q |
201 |
ggagtgacacagtagaccttc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15799066 |
ggagtgacacagtagaccttc |
15799046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15804879 - 15804660
Alignment:
| Q |
1 |
ctcaagtttctaatatatccatattcgtttgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccacnnnnnnncgtat |
100 |
Q |
| |
|
||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15804879 |
ctcaagtgtctaata-atccatatttatatgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccaccaaaaaatgtac |
15804781 |
T |
|
| Q |
101 |
gttgagagtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctag |
200 |
Q |
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| T |
15804780 |
attgaaagtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtccaccgttgttagcatgctag |
15804681 |
T |
|
| Q |
201 |
ggagtgacacagtagaccttc |
221 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
15804680 |
ggagtgagacagtagaccttc |
15804660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15763847 - 15763634
Alignment:
| Q |
1 |
ctcaagtttctaatatatccatattcgtttgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccacnnnnnnncgtat |
100 |
Q |
| |
|
||||||| ||||| ||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
15763847 |
ctcaagtgtctaa-atatccatatttgtgtgcagacttggaaactttggtgtgaaggaaaaagtatagaattaatcgatccatttcaccaaaagacgtac |
15763749 |
T |
|
| Q |
101 |
gttgagagtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctag |
200 |
Q |
| |
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|||| ||||||||| |||||| ||| ||||||||||||||||| ||||||||||| ||||||||| | ||||| || |||| || ||||| ||||||| |
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| T |
15763748 |
attgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttccactgtcgttcgtatgctag |
15763649 |
T |
|
| Q |
201 |
ggagtgacacagtag |
215 |
Q |
| |
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||||||| ||||||| |
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| T |
15763648 |
ggagtgatacagtag |
15763634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 15696690 - 15696499
Alignment:
| Q |
20 |
catattcgtttgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccacnnnnnnncgtatgttgagagtgaagtcatga |
119 |
Q |
| |
|
|||||| || ||||||||||||| || ||||||||||||||||| || |||||||| |||||| ||||| | || |||| ||||| || |||| |
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| T |
15696690 |
catatttgtatgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatga |
15696591 |
T |
|
| Q |
120 |
agtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtgacaca |
211 |
Q |
| |
|
||| || ||||||||||||||||| |||||| |||| || |||||| | ||||| ||||||| || ||| |||||||| ||||||||| |
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| T |
15696590 |
agtgcatacacattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacaca |
15696499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 15721901 - 15721792
Alignment:
| Q |
102 |
ttgagagtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagg |
201 |
Q |
| |
|
|||| |||||||| ||||| | || ||||| ||||||||||| ||||||||||| ||||||||| | ||||| ||||||| ||||||| ||||||||| |
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| T |
15721901 |
ttgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctagg |
15721802 |
T |
|
| Q |
202 |
gagtgacaca |
211 |
Q |
| |
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||||||||| |
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|
| T |
15721801 |
tagtgacaca |
15721792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 15703182 - 15703099
Alignment:
| Q |
128 |
cacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtgacaca |
211 |
Q |
| |
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|||| ||||||||||||| |||||||||| ||||||||| | ||||| ||||||| ||| |||| ||||||||| ||||||||| |
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| T |
15703182 |
cacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacaca |
15703099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 15710816 - 15710712
Alignment:
| Q |
107 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
206 |
Q |
| |
|
|||||||| ||||||| | ||||| ||||||||||| || || |||||||| |||||| | ||||| ||||||| | |||||| ||||||||| || | |
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|
| T |
15710816 |
agtgaagttatgaagtgcgtacacatcggtttattgtgtgtgcaggaagacgctgcagatcgaccaaccatgtccaccattgttctcatgctaggcagcg |
15710717 |
T |
|
| Q |
207 |
acaca |
211 |
Q |
| |
|
||||| |
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|
| T |
15710716 |
acaca |
15710712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 15703280 - 15703222
Alignment:
| Q |
30 |
tgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgatccattccac |
88 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||| ||| |||| |||||| ||||| |
|
|
| T |
15703280 |
tgcagacttggaaactttggtgcgaaagaaaaagtttggaaataatagatccaatccac |
15703222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 4547275 - 4547173
Alignment:
| Q |
109 |
tgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtgac |
208 |
Q |
| |
|
|||||| ||||||| ||| || |||||||| ||||| ||||||||||| |||| ||||| ||||| ||||||| |||||| |||||| | |||||| |
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|
| T |
4547275 |
tgaagttatgaagtgtatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgac |
4547176 |
T |
|
| Q |
209 |
aca |
211 |
Q |
| |
|
||| |
|
|
| T |
4547175 |
aca |
4547173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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