View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17114_low_4 (Length: 460)
Name: NF17114_low_4
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17114_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Original strand, 15147009 - 15147438
Alignment:
| Q |
13 |
aaaatataaatcgtaatatgaaagcaataataaaactaaccaaattgtgatgtgtaaataaaattatatacctaaggttgttcaaaaaactgaaatggtt |
112 |
Q |
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| T |
15147009 |
aaaatataaatcggagtatgaaagcaataataaaactaaccaaattgtgatgtgtaaataaaattatatacctaaggttgttcaaaaaactgaaatggtt |
15147108 |
T |
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| Q |
113 |
ctaagcacatgcacatgttatcaccagtacaaatcactgttagaggaagtggacaattttcgggattacactctatttcatcattgcaatataaagcata |
212 |
Q |
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| T |
15147109 |
ctaagcacatgcacatgttatcaccagtacaaatcactgtcagaggaagtggacaattttcgggattacactctatttcatcattgcaatataaagcata |
15147208 |
T |
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| Q |
213 |
agctgcaattcaaaacataataaataattgttaatgatgaaatattatgcataagaaaaattgaaaaggttaagtgaaaaggcttactagcttttacgtt |
312 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
15147209 |
agctgcaattcaaaacataataaataattg--agggatgaaatattatgcataagaaaaattgaaagggttgagtgaaaaggcttactagcgcttacgtt |
15147306 |
T |
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| Q |
313 |
gcctac--agnnnnnnntagagaaataaagatgatcataacataaaaagacttaaatatttcagacataattttctcctttttatgtaatcaacatttct |
410 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
15147307 |
gcctacaaaaaaaaaaatagagaaataaagatgatcataatataaaaagacttaaatatttcggacatatttttctcctttttatgtaatcaacatttct |
15147406 |
T |
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| Q |
411 |
tgttattcttaatttatattgagatttgttag |
442 |
Q |
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| T |
15147407 |
tgttattcttaatttatattgagatttgttag |
15147438 |
T |
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