View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17114_low_8 (Length: 311)

Name: NF17114_low_8
Description: NF17114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17114_low_8
NF17114_low_8
[»] chr8 (8 HSPs)
chr8 (1-300)||(24871934-24872234)
chr8 (1-111)||(25725977-25726087)
chr8 (1-111)||(25626029-25626139)
chr8 (1-118)||(25498219-25498336)
chr8 (1-80)||(25370239-25370318)
chr8 (1-111)||(25394964-25395074)
chr8 (1-118)||(24897057-24897174)
chr8 (18-111)||(25667513-25667606)
[»] scaffold0779 (1 HSPs)
scaffold0779 (3-118)||(713-828)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-80)||(2405-2484)
[»] scaffold0830 (1 HSPs)
scaffold0830 (1-66)||(1313-1378)
[»] chr4 (1 HSPs)
chr4 (1-118)||(10330569-10330686)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 24871934 - 24872234
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24871934 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaactgcacatccttaataagctttgttttag 24872033  T
Q  101 catcaaacttttttacag-tatgtttcatatttacattatctactatttaataatttccttgtctcgtcatttgttgcaaagccttaaagtattcatctt 199  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24872034 catcaaacttttttacaggtatgtttcatatttactttatctactatttaaaaatttccttgtctcgtcatttgttgcaaagccttaaagtattcatctt 24872133  T
Q  200 tctttatgaagctgtatatttagttgctcattcgtagaataatatcattttgctagtttcaacactagaaaggtaagctttttatttgttgttagtttca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24872134 tctttatgaagctgtatatttagttgctcattcgtagaataatatcattttgctagtttcaacactagaaagataagctttttatttgttgttagtttca 24872233  T
Q  300 t 300  Q
    |    
T  24872234 t 24872234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 25726087 - 25725977
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    ||||||||||| |||||||||||| |||| ||||||||| ||||||||| |||||||||||||||| ||||| | ||||| || |||  ||| ||||||     
T  25726087 cttcctcaactcgaaaattttactttaaacaacaatcaatttgaaggaagcattccacaatcaattggtaactgtacatcattgatatacttagttttat 25725988  T
Q  101 catcaaacttt 111  Q
    |||||||||||    
T  25725987 catcaaacttt 25725977  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 25626139 - 25626029
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    |||||||||||| ||  ||||||  |||| ||||||||| ||||||||| |||||||||||||||| ||||| ||||||| || |||  ||| | ||||     
T  25626139 cttcctcaacttaaattttttacattaaacaacaatcaatttgaaggaagcattccacaatcaattggtaactgcacatcgttgatatacttagatttat 25626040  T
Q  101 catcaaacttt 111  Q
    |||||||||||    
T  25626039 catcaaacttt 25626029  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 25498336 - 25498219
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    ||||||||||| ||| |||||||| |||  ||||||||| ||||||||| |||||||| ||||||| ||||| ||||||| || |||  | |   |||||    
T  25498336 cttcctcaactcgaagattttactttaaggaacaatcaatttgaaggaagcattccacgatcaattggtaactgcacatcgttgatatacataaatttag 25498237  T
Q  101 catcaaacttttttacag 118  Q
    ||||||||||||| ||||    
T  25498236 catcaaactttttgacag 25498219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25370318 - 25370239
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatc 80  Q
    |||||||||||| ||| ||||||  || | ||||||||| ||||||||| |||||||||||||||| ||||| |||||||    
T  25370318 cttcctcaacttcaaatttttacattacacaacaatcaatttgaaggaagcattccacaatcaattggtaactgcacatc 25370239  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 25395074 - 25394964
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    |||||||||||   |||||||| | |||| ||||||||| ||||||||| |||||||||||||||| ||||| | ||||| || |||  ||| | ||||     
T  25395074 cttcctcaactcagaaattttaatttaaacaacaatcaatttgaaggaagcattccacaatcaattggtaactgtacatcattgatatacttagatttat 25394975  T
Q  101 catcaaacttt 111  Q
    |||||||||||    
T  25394974 catcaaacttt 25394964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 24897057 - 24897174
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    ||||||||||| ||| ||| || | |||| ||||||||| ||||||||| |||||||| ||||||| ||||| ||||||| || |||  | |   |||||    
T  24897057 cttcctcaactcgaatattgtattttaaacaacaatcaatttgaaggaagcattccacgatcaattggtaactgcacatcgttgatacacatatatttag 24897156  T
Q  101 catcaaacttttttacag 118  Q
    ||||||||||||| ||||    
T  24897157 catcaaactttttgacag 24897174  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 25667606 - 25667513
Alignment:
Q  18 ttttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttagcatcaaacttt 111  Q
    ||||||| |||| ||||||||| |  |||||| |||||||||||||||| |||||  |||||| || |||  ||| | |||| |||||||||||    
T  25667606 ttttactttaaacaacaatcaattaaaaggaagcattccacaatcaattggtaacttcacatcattgatatacttagatttatcatcaaacttt 25667513  T

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Target: scaffold0779 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 713 - 828
Alignment:
Q  3 tcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttagca 102  Q
    |||||||||||||||||| | | |||| ||||||||| ||||||||| |||||||| ||||||| ||||  | ||||| || |||  ||| ||||||||     
T  713 tcctcaacttgaaaatttaattttaaacaacaatcaatttgaaggaagcattccacgatcaattggtaattgtacatcattgatatacttggttttagct 812  T
Q  103 tcaaacttttttacag 118  Q
    || |||||||| ||||    
T  813 tcgaactttttcacag 828  T

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Target: scaffold0466 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2405 - 2484
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatc 80  Q
    |||||||||||   |||||||| | || | ||||||||| ||||||||| |||||||||||||||| ||||| |||||||    
T  2405 cttcctcaactcagaaattttagtttatacaacaatcaatttgaaggaagcattccacaatcaattggtaactgcacatc 2484  T

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Target: scaffold0830 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1313 - 1378
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaatt 66  Q
    ||||||||||||||| ||||| || || | ||||||||  ||||||||| |||||||| |||||||    
T  1313 cttcctcaacttgaagatttttctttagacaacaatcattttgaaggaagcattccacgatcaatt 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 10330686 - 10330569
Alignment:
Q  1 cttcctcaacttgaaaattttactataaataacaatcaaattgaaggaaacattccacaatcaattagtaaccgcacatccttaataagctttgttttag 100  Q
    ||||||||||||||| || ||||  |||   |||||||| ||||||||| |||||||  ||||||  ||||| ||||||| || |||| ||| | ||||     
T  10330686 cttcctcaacttgaagatcttacattaaccgacaatcaatttgaaggaagcattccaagatcaatcggtaactgcacatcgttgataaacttagatttac 10330587  T
Q  101 catcaaacttttttacag 118  Q
     ||| |||||||||||||    
T  10330586 aatcgaacttttttacag 10330569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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