View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17115_high_2 (Length: 548)
Name: NF17115_high_2
Description: NF17115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17115_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 32096370 - 32095848
Alignment:
| Q |
18 |
gttatggtaatgttgagggagttgaggattgaggttattggagttcaatcttcgcttaataatggtgtttttgttgcggagttgagggctaaggtgaagg |
117 |
Q |
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| T |
32096370 |
gttatggtaatgttgagggagttgaggattgaggttattggagttcaatcttcgcttaataatggtgtttttgttgcggagttgagggctaaggtgaagg |
32096271 |
T |
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| Q |
118 |
aaaatggtggaaatgggaagaaagttagtattgttgaagttaagagagcacttaaccaaattatacctcacaacatttagtgcatgattgaaattgacga |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096270 |
aaaatggtggaaatgggaagaaagttagtattgtggaagttaagagagcacttaaccaaattatacctcacaacatttagtgcatgattgaaattgacga |
32096171 |
T |
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| Q |
218 |
tgagtttgataaaatcacagtgatatcgtgattttcttaaagttttaaagagtgatttttgacaaaacaatagtggtatagtgtgattctgtcaaactta |
317 |
Q |
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| T |
32096170 |
tgagtttgataaaatcacagtgatatcgtaatttttttaaagttttaaagagtaatttttggcaaaacaatagtggtacagtgtgattctgtcaaactta |
32096071 |
T |
|
| Q |
318 |
ttgttaatccaaatatatatttggatcaacggtgactttgccaaaaccagaatgattatgtcaatctcactgtaaatctaaacaggtaatgattatgatt |
417 |
Q |
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| T |
32096070 |
ttgttaatccaaatatatgtttgaatcaacggtgaatttgccaaaatcagaatgattatgtcaatctcactgtgaatctaaacaggtaatgattatgatt |
32095971 |
T |
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| Q |
418 |
ttggcatc-----tacattggcttaatatgtacatatatatcatctcaagccatgaccctaggaagtgaagtctagtagtaattaataaacaacatttgg |
512 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095970 |
ttggcatctcgtatacattggcttaatatgtacatatatatcatctcaagccatgaccctaggaagtgaagtctagtagtaattaataaacaacatttgg |
32095871 |
T |
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| Q |
513 |
aagatatggattctagatcatct |
535 |
Q |
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| T |
32095870 |
aagatatggattctatatcatct |
32095848 |
T |
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