View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17115_high_4 (Length: 358)
Name: NF17115_high_4
Description: NF17115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17115_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 35 - 346
Target Start/End: Original strand, 11962328 - 11962639
Alignment:
| Q |
35 |
caattgttgataggtgtagttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagctctaatgattttcttggcagccatattt |
134 |
Q |
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| T |
11962328 |
caattcttggtaggtgcaattgatttcacttcgttgattgtcttgcaaaatatggaatatttggatcttagctctaacgattttcctggcagccatattt |
11962427 |
T |
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| Q |
135 |
cagaacaaataggctcacttaccaagttaaagtatctcaatctctcaaattctttacttggtgggaggattccttatcaaattggaaaacttttagatct |
234 |
Q |
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| T |
11962428 |
cagaacaaataggctcacttaccaagttaaagtatctcaatctctcagaatctttacctcgtgggaggattccttatcaaattggaaaacttttagagct |
11962527 |
T |
|
| Q |
235 |
tgaatatctagatctaagttggatgaattatggtacgaatggagaaattccttctcaactcgggaatcttacacgtttacgatatctcaatctaagagat |
334 |
Q |
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||||||||||||||||||| ||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11962528 |
tgaatatctagatctaagtgggatggtttatggtacaaaaggagaaatcccttctcaactcgggaatcttacacgtttacgatatctcaatctaagagat |
11962627 |
T |
|
| Q |
335 |
aactataatatt |
346 |
Q |
| |
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|||| ||||||| |
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| T |
11962628 |
aactttaatatt |
11962639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 54 - 346
Target Start/End: Complemental strand, 11853204 - 11852912
Alignment:
| Q |
54 |
ttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagctctaatgattttcttggcagccatatttcagaacaaataggctcact |
153 |
Q |
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| T |
11853204 |
ttgatttcacttggttgattgtcttgcaaaatatggaatatttggatcttagctataatttatttcaaggcaatcttttttcagaacaaataggctcact |
11853105 |
T |
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| Q |
154 |
taccaagttaaagtatctcaatctctcaaattctttacttggtgggaggattccttatcaaattggaaaacttttagatcttgaatatctagatctaagt |
253 |
Q |
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| T |
11853104 |
taccaagttaaagtatctcaatttctcaaattcttttgttggtgggaggattccttatcaaattggaaaacttttagatcttgaatatctagatctaagt |
11853005 |
T |
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| Q |
254 |
tggatgaattatggtacgaatggagaaattccttctcaactcgggaatcttacacgtttacgatatctcaatctaagagataactataatatt |
346 |
Q |
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|||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
11853004 |
gagatgttttatggtataaacggagaaatcccttctcaactcgggaatcttacacgtttacgatatctcaacctaagagataacgaaaatatt |
11852912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 333
Target Start/End: Original strand, 11928077 - 11928365
Alignment:
| Q |
45 |
taggtgtagttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagctctaatgattttcttggcagccatatttcagaacaaat |
144 |
Q |
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|||||| | |||||||||| || ||| |||||||| | ||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| || |
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| T |
11928077 |
taggtgcaattgatttcacgtcgttgattgtcttggaaaatatggaatatttggatcttagctctaatgtatttcctggcagacatatttcagaacacat |
11928176 |
T |
|
| Q |
145 |
aggctcacttaccaagttaaagtatctcaatctctcaaattctttacttggtgggaggattccttatcaaattggaaaacttttagatcttgaatatcta |
244 |
Q |
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||| |||| |||||||||||| ||||||||| | || |||| || || ||||| |||||||||||||| ||||| |||||| | || || ||| || |
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| T |
11928177 |
aggatcacataccaagttaaaatatctcaatttatcgttttctgtatttcccgggagaattccttatcaaataggaaatcttttatagctagagtattta |
11928276 |
T |
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| Q |
245 |
gatctaagttggatgaattatggtacgaatggagaaattccttctcaactcgggaatcttacacgtttacgatatctcaatctaagaga |
333 |
Q |
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| T |
11928277 |
gatttaagtaaaagtttttatggtttgaatggagaaatacctcctcaacttgggaatcttacacgtttacgatatctcaatctaagaga |
11928365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 11833763 - 11833648
Alignment:
| Q |
231 |
atcttgaatatctagatctaagttggatgaattatggtacgaatggagaaattccttctcaactcgggaatcttacacgtttacgatatctcaatctaag |
330 |
Q |
| |
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|||| |||||||||||||||||| |||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11833763 |
atctagaatatctagatctaagtgagatgttttatggtacaaacggagaaatcccttctcaactcgggaatcttacacgtttacgatatctcaatctaag |
11833664 |
T |
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| Q |
331 |
agataactataatatt |
346 |
Q |
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| T |
11833663 |
agataactataatatt |
11833648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 11833877 - 11833760
Alignment:
| Q |
54 |
ttgatttcacttcattggttgtcttgaataatatggaatatttggatcttagctctaatgattttcttggcagccatatttcagaacaaataggctcact |
153 |
Q |
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||||||||||||| ||| |||||||| | |||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||| |
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| T |
11833877 |
ttgatttcacttcgttgattgtcttgcaaaatatggaatatttggatcttagccataatttatttcaaggcaattctatttcagaacaaataggctcact |
11833778 |
T |
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| Q |
154 |
taccaagttaaagtatct |
171 |
Q |
| |
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|||||||||||||||||| |
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| T |
11833777 |
taccaagttaaagtatct |
11833760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 48207317 - 48207369
Alignment:
| Q |
131 |
atttcagaacaaataggctcacttaccaagttaaagtatctcaatctctcaaa |
183 |
Q |
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||||| ||||| |||| ||||||||||||||||| || ||||||||||||||| |
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| T |
48207317 |
atttctgaacacatagactcacttaccaagttaaggtttctcaatctctcaaa |
48207369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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