View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17115_high_5 (Length: 357)
Name: NF17115_high_5
Description: NF17115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17115_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 11962622 - 11962960
Alignment:
| Q |
1 |
agagataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaa |
100 |
Q |
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| T |
11962622 |
agagataactttaatattgttggagaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaa |
11962721 |
T |
|
| Q |
101 |
tcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctacactctc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
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| T |
11962722 |
tcccttttcaaccagggaatcttcccgttttgcaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttgtatacactgtc |
11962821 |
T |
|
| Q |
201 |
ttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcacttgcaaacaatcatgaagttttttccaaacttaagagagttgagg |
300 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11962822 |
ttctttaacaagtctttccctgagaggaatgtatcttagttttgactcttctcacttgcaaacaatcatgaagttttttccaaacttaagagagttgagg |
11962921 |
T |
|
| Q |
301 |
ttagttgaatttggtctgatagataatgatgtcgcgtct |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11962922 |
ttagttgaatttggtctgatagataatgatgtcgcgtct |
11962960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 11852929 - 11852585
Alignment:
| Q |
1 |
agagataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaa |
100 |
Q |
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||||||||| | |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||| |
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| T |
11852929 |
agagataacgaaaatattgttggagaaatcccttgtcaacttagaaatctctcacaactacagtaccttaatcttgaaggaacatctcttactgaactaa |
11852830 |
T |
|
| Q |
101 |
tcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctacactctc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11852829 |
tcccttttcaaccagggaatcttcccgttttgcaaactcttaaacttgatgtgtattttgatcttacaaatgataatataaaatggttgtctacactctc |
11852730 |
T |
|
| Q |
201 |
ttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcact------tgcaaacaatcatgaagttttttccaaacttaagagag |
294 |
Q |
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||||||||||||||||||||| || |||| ||||| ||| ||||||| || ||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
11852729 |
ttctttaacaagtctttccctcagcggacaatatcgtaggtttgtcttttttcactacttgcagcaaacaatcatgaagtttattccaaacttaagagag |
11852630 |
T |
|
| Q |
295 |
ttgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
339 |
Q |
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|||||||||||||| |||||||| ||||||| |||||||| |||| |
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| T |
11852629 |
ttgaggttagttgattttggtcttatagatactgatgtcgtgtct |
11852585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 11833665 - 11833321
Alignment:
| Q |
1 |
agagataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
11833665 |
agagataactataatattgttggagaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttcttttaccggagtaa |
11833566 |
T |
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| Q |
101 |
tcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctacactctc |
200 |
Q |
| |
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|||||||||||||||| |||||||| ||||| || |||||||||||||||||||||| || | ||| || ||||||||| ||||| ||||||||||| |
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| T |
11833565 |
tcccttttcaaccaggaaatcttcctgttttgcacactcttaaacttgatgtgtattatcatttcacagatagtaatataaagtggttgtctacactctc |
11833466 |
T |
|
| Q |
201 |
ttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcact------tgcaaacaatcatgaagttttttccaaacttaagagag |
294 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||| ||| ||||||| || ||||| | |||||||||||||||||| ||||||||||||||||| |
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| T |
11833465 |
ttctttaacaagtctttccctgagcggacaatatcgtaggtttgtcttttttcactacttgctccaaacaatcatgaagtttattccaaacttaagagag |
11833366 |
T |
|
| Q |
295 |
ttgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
339 |
Q |
| |
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|||||||||||||| |||||||| ||||||| |||||||| |||| |
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| T |
11833365 |
ttgaggttagttgattttggtcttatagatactgatgtcgtgtct |
11833321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 11928373 - 11928511
Alignment:
| Q |
13 |
aatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatcccttttcaac |
112 |
Q |
| |
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|||||| |||| |||||||||||| |||| |||||||||||||| | ||| |||||||||||| | |||||||||| | |||| |||||||||||| |
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| T |
11928373 |
aatattattggtgaaatcccttgtcaacttagaaatctctcacaattgcagcaccttgatcttggaaaaacttctctttcaggagcaatcccttttcatg |
11928472 |
T |
|
| Q |
113 |
cagggaatcttcccgttttacaaactcttaaacttgatg |
151 |
Q |
| |
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||||||||||| |||| |||||||| ||||| |||| |
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| T |
11928473 |
ttgggaatcttccatttttgcaaactctgaaactcgatg |
11928511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 11928610 - 11928670
Alignment:
| Q |
279 |
tccaaacttaagagagttgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
339 |
Q |
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|||||||||| |||||||||| || ||| |||||||||| |||||||||||||||||||| |
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| T |
11928610 |
tccaaacttatgagagttgagattggttcaatttggtcttctagataatgatgtcgcgtct |
11928670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 20735779 - 20735874
Alignment:
| Q |
17 |
ttgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatcccttttcaac |
112 |
Q |
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|||||||| |||||||||| |||||||||||| || |||||||||| ||| | |||| ||||| ||||||| | |||| |||||||| ||||| |
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| T |
20735779 |
ttgttggagtaatcccttgtgaacttggaaatctagcaaaactacagtatcttaaccttggaggaaattctctttcaggagcaatcccttatcaac |
20735874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 20761563 - 20761468
Alignment:
| Q |
17 |
ttgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatcccttttcaac |
112 |
Q |
| |
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|||||||| ||||||||||| |||||||||||| || ||||| |||| ||| | |||| ||||| ||||||| | |||| |||||||| ||||| |
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| T |
20761563 |
ttgttggagaaatcccttgtgaacttggaaatctagcaaaactagagtatcttaaccttggaggaaattctctttcaggagcaatcccttatcaac |
20761468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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