View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17115_high_7 (Length: 250)

Name: NF17115_high_7
Description: NF17115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17115_high_7
NF17115_high_7
[»] chr5 (3 HSPs)
chr5 (1-161)||(614481-614641)
chr5 (81-156)||(22903218-22903291)
chr5 (92-161)||(11856265-11856334)
[»] chr7 (4 HSPs)
chr7 (76-160)||(43342375-43342459)
chr7 (81-161)||(17303204-17303284)
chr7 (120-161)||(10334176-10334217)
chr7 (120-161)||(26284466-26284507)
[»] chr2 (1 HSPs)
chr2 (80-161)||(14539793-14539874)
[»] chr6 (3 HSPs)
chr6 (76-161)||(11279497-11279580)
chr6 (120-155)||(27863698-27863733)
chr6 (95-161)||(13103207-13103275)
[»] chr4 (7 HSPs)
chr4 (80-161)||(322638-322719)
chr4 (80-160)||(47083979-47084058)
chr4 (122-161)||(9742622-9742661)
chr4 (120-161)||(11054451-11054492)
chr4 (120-161)||(12792320-12792361)
chr4 (120-161)||(17888639-17888680)
chr4 (120-161)||(31377388-31377429)
[»] chr3 (4 HSPs)
chr3 (76-161)||(51336164-51336249)
chr3 (80-161)||(6280447-6280528)
chr3 (120-161)||(10839469-10839510)
chr3 (120-161)||(48206852-48206893)
[»] scaffold0016 (1 HSPs)
scaffold0016 (120-161)||(85509-85550)
[»] chr8 (1 HSPs)
chr8 (120-161)||(2824270-2824311)
[»] chr1 (3 HSPs)
chr1 (120-161)||(10907737-10907778)
chr1 (120-161)||(38859849-38859890)
chr1 (123-155)||(37189304-37189336)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 614641 - 614481
Alignment:
Q  1 tattttcaacgtgacttaacttgccatagtaatgtgttgtagacatatagtacgtaattgcacggttgtattcattggtggagccagaatcattacaaag 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  614641 tattttcaatgtgacttaacttgccatagtaatgtgttgtagacatatagtacgtaattgcacggttgtattcattggcggagccagactcattacaaag 614542  T
Q  101 cctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  614541 cctcgacaaaaaatgtttacaacacatttataggtgtttacataagaaattgcaagcaaat 614481  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 22903218 - 22903291
Alignment:
Q  81 gagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaag 156  Q
    |||||||||| |||| |||||||||  ||||||   || ||||||||||||||| |||||||||||||||||||||    
T  22903218 gagccagaattattataaagcctgggaaaaaaaa--ttgcaacacatttatagaggtttacataagaaattgcaag 22903291  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 11856265 - 11856334
Alignment:
Q  92 attacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||| ||||||||| ||||||||  || ||||| ||||||||  ||||||||||||||||||||| ||||    
T  11856265 attataaagcctgggcaaaaaataattgcaacatatttataggagtttacataagaaattgcaagtaaat 11856334  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 43342375 - 43342459
Alignment:
Q  76 tggtggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaa 160  Q
    |||||||||||| || ||||||||| |||| |||||||  |||  ||||||||||||| ||||||||||||||||||||| ||||    
T  43342375 tggtggagccaggattattacaaagtctgggcaaaaaaattttgaaacacatttataggtgtttacataagaaattgcaataaaa 43342459  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 17303284 - 17303204
Alignment:
Q  81 gagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||||| |||  ||||||||| |||||||   || ||||||||||||||  ||||||||||||||||||||| ||||    
T  17303284 gagccagaattattgtaaagcctgggcaaaaaaaaattgcaacacatttatagtggtttacataagaaattgcaagcaaat 17303204  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 10334176 - 10334217
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  10334176 caacacatttataggggtttacataagaaattgcaagcaaat 10334217  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 26284507 - 26284466
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||  ||||||| ||||||||||||||||||    
T  26284507 caacacatttataggggtttacaaaagaaattgcaagaaaat 26284466  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 14539874 - 14539793
Alignment:
Q  80 ggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||| ||  ||| ||||||| |||||||||  ||| |||||||||||||| |||||| ||||||||||||||||||||    
T  14539874 ggagccaggattgttataaagcctagacaaaaaaaatttgcaacacatttataggtgtttatataagaaattgcaagaaaat 14539793  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 11279497 - 11279580
Alignment:
Q  76 tggtggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||| |||| |||||||||  ||||||   || |||||||||||||||  |||||||||||||||||||| ||||    
T  11279497 tggtggagccagaattattataaagcctggggaaaaaaa--ttgcaacacatttatagagatttacataagaaattgcaagcaaat 11279580  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 27863698 - 27863733
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaa 155  Q
    ||||||||||||||||||||||||||||||||||||    
T  27863698 caacacatttatagatgtttacataagaaattgcaa 27863733  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 13103275 - 13103207
Alignment:
Q  95 acaaagcctggacaaaaaatgtttacaacaca--tttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||| |||||||   ||||||||||  ||||||| ||||||||| |||||||||||| ||||    
T  13103275 acaaagcctgggcaaaaaaaaattacaacacacatttataggtgtttacattagaaattgcaagcaaat 13103207  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 322719 - 322638
Alignment:
Q  80 ggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||| || ||||||||| |||| |||||||   || ||||||||||| || |||||||||||||||||||||| ||||    
T  322719 ggagccaggattattacaaagtctgggcaaaaaaaaattgcaacacatttacaggtgtttacataagaaattgcaagcaaat 322638  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 47083979 - 47084058
Alignment:
Q  80 ggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaa 160  Q
    |||||||| ||  |||||||||||||  ||||||  ||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  47083979 ggagccaggattgttacaaagcctgggaaaaaaaa-tttgcaacacctttataggtgtttacataagaaattgcaataaaa 47084058  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 9742661 - 9742622
Alignment:
Q  122 acacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaat 9742622  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 11054451 - 11054492
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||| | ||||||||||||||||||||| ||||    
T  11054451 caacacatttataaaggtttacataagaaattgcaagcaaat 11054492  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 12792361 - 12792320
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||||||||| |||||||||| |||| ||||    
T  12792361 caacacatttatagatgtttatataagaaatttcaagcaaat 12792320  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 17888680 - 17888639
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  17888680 caacacatttataggggtttacataagaaattgcaagcaaat 17888639  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 31377388 - 31377429
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  31377388 caacacatttatagcggtttacataagaaattgcaagcaaat 31377429  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 51336164 - 51336249
Alignment:
Q  76 tggtggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||| ||| |||| |||   ||| |||||||  ||||||||||||||||||| |||||| |||||||||||||| ||||    
T  51336164 tggtggagccataattattataaaatttgggcaaaaaaaatttacaacacatttatagaagtttacgtaagaaattgcaagtaaat 51336249  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 6280528 - 6280447
Alignment:
Q  80 ggagccagaatcattacaaagcctggacaaaaaatgtttacaacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||| || |||| |||| ||||||||||||  ||| ||||||||||||| | |||||||||| |||| ||||| ||||    
T  6280528 ggagccaggattattataaagtctggacaaaaaaaatttgcaacacatttataaaggtttacataaaaaatggcaagcaaat 6280447  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 10839510 - 10839469
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  10839510 caacacatgtataggtgtttacataagaaattgcaagcaaat 10839469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 48206852 - 48206893
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||||||||  |||||||||||||||||||||| ||||    
T  48206852 caacacatttataagtgtttacataagaaattgcaagtaaat 48206893  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 85509 - 85550
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||    
T  85509 caacatatttatagaggtttacataagaaattgcaagcaaat 85550  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 2824311 - 2824270
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||| || |||||||||||||||||||||| ||||    
T  2824311 caacacatttaaaggtgtttacataagaaattgcaagcaaat 2824270  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 10907778 - 10907737
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    |||||||||||||| ||| |||||||||||||||||| ||||    
T  10907778 caacacatttataggtgtctacataagaaattgcaagcaaat 10907737  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 38859849 - 38859890
Alignment:
Q  120 caacacatttatagatgtttacataagaaattgcaagaaaat 161  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaat 38859890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 37189304 - 37189336
Alignment:
Q  123 cacatttatagatgtttacataagaaattgcaa 155  Q
    |||||||||||| ||||||||||||||||||||    
T  37189304 cacatttatagaggtttacataagaaattgcaa 37189336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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