View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17115_low_1 (Length: 562)
Name: NF17115_low_1
Description: NF17115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17115_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 514
Target Start/End: Complemental strand, 49115956 - 49115450
Alignment:
| Q |
12 |
tagcaaagggggtggaatggaattagtggcaattcctaataagataagatatctgaaaaaagaatattaccttctatacgctgccatgctcggccatata |
111 |
Q |
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| T |
49115956 |
tagcaaagggggtgggatggaattagtggcaattcctaataagataagatatctgaaaaaagaatattaccttctatacgctgccatgctcggccatata |
49115857 |
T |
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| Q |
112 |
gcttgagggcttctagaaatcgattatgttcgtcttcagtccatcgttctctttgttttgtgattgtatatggctttcttgtctgcaaatattgtgtatg |
211 |
Q |
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| T |
49115856 |
gcttgagggcttctagaaatcgattatgttcgtcttcagtccatcgttctctttgttttgtgattgtatatggctttcttgtctgcaaatattgtgtatg |
49115757 |
T |
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| Q |
212 |
tatgtatgta----gttagattgattgaatggtttatgttatgtgggattaagaaatggaatgcaaaataaagtagtgagtgaccttgagaacgacgtct |
307 |
Q |
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| T |
49115756 |
tatgtatgtatgtagttagattgattgaatggtttatgttatgtgagattaagaaatggaaagcaaaataaggtagtgagtgaccttgagaacgacgtct |
49115657 |
T |
|
| Q |
308 |
tctccagaggagtatgctgctgcatccatgaggttcagcagatcttattccctgaggagagggaggagtgaggtggtttggtttgtttgttgtgacatga |
407 |
Q |
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| T |
49115656 |
tctccagaggagtatgctgctgcatccatgaggttcagcagatcttattccctgaggagagggaggagtgaggtggtttggtttgtttgttgtgacatga |
49115557 |
T |
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| Q |
408 |
agcagagcagaggaaatagtaagaaggatgatgttgctttgctgttggttactactgcaaagcaaaagaaacagaaagaataggtagagatccgtctctg |
507 |
Q |
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| T |
49115556 |
agcagagcagaggaaatagtaagaaggatgatgttgctttgctgttgattactactgcaaagcaaaagaaacagaaagaataggtagagatccgtctctg |
49115457 |
T |
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| Q |
508 |
tattgaa |
514 |
Q |
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| T |
49115456 |
tattgaa |
49115450 |
T |
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