View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17115_low_6 (Length: 348)
Name: NF17115_low_6
Description: NF17115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17115_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 32 - 337
Target Start/End: Complemental strand, 8131261 - 8130954
Alignment:
| Q |
32 |
atatttttatgatcatatatagaaatgatccaaggtataattagagt-gttaggttcattagttcactttctaactatggaatattatgaaattccacca |
130 |
Q |
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| T |
8131261 |
atatttttatgatcatatatagaaatgatcaaaggtataattagagtaggttcattaattagttcacttgctaactatggaatattatgaaatttcacca |
8131162 |
T |
|
| Q |
131 |
ttagttatatgtgtgtggta-gagggaagataaaggagaagaatgtttgcaaaactttgtatttctaaatggtatgcaactcttatattcatcattataa |
229 |
Q |
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| T |
8131161 |
ttagctatatgtgtgtgttatgagggaagataaaggagaagaatgattgcaaaactttgtatttctaaatggtatgcaactcttatattcatcattataa |
8131062 |
T |
|
| Q |
230 |
gttgtgcttatgaatttatgatcaaattgtgtttacactgcgaaccttgatattgcggtaaaatgcaggttaattcagttggtgcgggtcgattcctgtt |
329 |
Q |
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| T |
8131061 |
gttgtgcttatgaatttatgatcaaattgtgtttacactgcgaaccttgataatgcggtaaaatgcaggttaattcagttggtgcgggtcgattcctgtt |
8130962 |
T |
|
| Q |
330 |
gtgatatt |
337 |
Q |
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| T |
8130961 |
gtgatatt |
8130954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 26331740 - 26331708
Alignment:
| Q |
262 |
ttacactgcgaaccttgatattgcggtaaaatg |
294 |
Q |
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| T |
26331740 |
ttacactgcgaacctttatattgcggtaaaatg |
26331708 |
T |
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