View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17116_high_1 (Length: 672)
Name: NF17116_high_1
Description: NF17116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17116_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 3644944 - 3645600
Alignment:
| Q |
1 |
atttatagcactcaacatagccaaaagccagtaataatcattaagcctcccttggttaagattatctgcaatccatggtttacttggacctgttatttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3644944 |
atttatagcactcaacatagccaaaagccagtaataataattaagcctcccttggttaagattatctgcaatccatggtttacttggacctgttatttta |
3645043 |
T |
|
| Q |
101 |
ttcactgtagacactaataaagagctgaagaaaaatcctaaggatcttgaactcaagaatagtcccatgctcatagttttcatcccatctggacattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645044 |
ttcactgtagacactaataaagagctgaagaaaaatcctaaggatcttgaactcaagaatagtcccatgctcatagttttcatcccatctggacattctc |
3645143 |
T |
|
| Q |
201 |
tgagaaaaaagtctagttgtcccatatacatgaaggactctcccgatcccacaatgaaaaattgcggtatcaaccagaaaacacttaatggaatccttgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3645144 |
tgagaaaaaagtctagttgtcccatatacatgaaagactctcccgatcccacaatgaaaaattgcggtatcaaccagaaaacacttaatggaatctttgc |
3645243 |
T |
|
| Q |
301 |
cgttggatcattcaccaaaccatgtgattgtgcaaatattaatcgcttttcttcgacaagagctgctgcaaccatagataagattgaaagaactaaacca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645244 |
cgttggatcattcaccaaaccatgtgattgtgcaaatattaatcgcttttcttcgacaagagctgctgcaaccatagataagattgaaagaactaaacca |
3645343 |
T |
|
| Q |
401 |
actccagtatgctgtaaaggggtaagcccttgtgggtttttaagtactttccttgcaataggacaaatgacacggtcataaaaagggacattcaagagaa |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3645344 |
actccagtatgctgtaaaggggtaagcccttgtgggtttttaagtactttccttgcaattggacaaatgacacggtcataaaaagggacattcaagagaa |
3645443 |
T |
|
| Q |
501 |
tagttccaattaaaaaggatgtcattgatgctgctgggatttgaaatgattttccaatgtggcgatccatagtggttgcctgtgataccgagagtgtcat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3645444 |
tagttccaattaaaaaggatgtcattgatgctgctgggatttgaaatgattttccaatgtggcgatccatagtggttgcctgtgataccgagagtgtcat |
3645543 |
T |
|
| Q |
601 |
catttgaacttgaacagtccaaaacacgatggttgatgcccatatagggagcattct |
657 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645544 |
catttgaacttgaacagtccaaaacacgatggttgatgcccatatagggagcattct |
3645600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 645
Target Start/End: Original strand, 3655618 - 3656259
Alignment:
| Q |
1 |
atttatagcactcaacatagccaaaagccagtaataatcattaagcctcccttggttaagattatctgcaatccatggtttacttggacctgttatttta |
100 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| ||| |||||| ||||||||||| | ||||||||| ||||||||||||||| ||||||| || | || |
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|
| T |
3655618 |
atttatagcacttagcatagccaatagccaataaaaatcatagagcctcccttgatcaagattatccgcaatccatggtttatttggaccggtcacattg |
3655717 |
T |
|
| Q |
101 |
ttcactgtagacactaataaagagctgaagaaaaatcctaaggatcttgaactcaagaatagtcccatgctcatagttttcatcccatctggacattctc |
200 |
Q |
| |
|
|||||| || ||||||||| ||||| |||||||| |||| || || |||||||| | || | |||||||||||||| || | |||||||||| |
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|
| T |
3655718 |
ttcactagagtcactaataatgagctaaagaaaaaccctattgagagtgtgctcaagaacaaccctgtactcatagttttcattcctttaggacattctc |
3655817 |
T |
|
| Q |
201 |
tgagaaaaaagtctagttgtcccatatacatgaaggactctcccgatcccacaatgaaaaattgcggtatcaaccagaaaacacttaatggaatccttgc |
300 |
Q |
| |
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| ||||||||||||| ||||||||||||||| |||| |||||| || || |||| ||||||||| || | |||||| || ||||| ||||| ||| |||| |
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| T |
3655818 |
ttagaaaaaagtctaattgtcccatatacataaaggcctctccagacccaacaaagaaaaattgtggcaccaaccaaaacacactcaatggcatctttgc |
3655917 |
T |
|
| Q |
301 |
cgttggatcattcaccaaaccatgtgattgtgcaaatattaatcgcttttcttcgacaagagctgctgcaaccatagataagattgaaagaactaaacca |
400 |
Q |
| |
|
||||||||| | || |||||||||||| ||| ||| | |||||||| ||| | || ||||| |||||||| |||| | ||| || ||||||||| |
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| T |
3655918 |
cgttggatcgtctacaaaaccatgtgatcttgcgaatttcaatcgcttcatttctatgagtgctgccgcaaccatggatattactgagaggactaaacca |
3656017 |
T |
|
| Q |
401 |
actccagtatgctgtaaaggggtaagcccttgtgggtttttaagtactttccttgcaataggacaaatgacacggtcataaaaagggacattcaagagaa |
500 |
Q |
| |
|
|| ||| | | ||||||||||| | || |||| ||| || |||||||| |||| | || | ||||| ||||| || ||||| || | | ||||| |
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|
| T |
3656018 |
acaccaatgcgttgtaaaggggtgaatccgtgtgagttgtttagtactttttttgcgacgggtcgaatgaagcggtcgtagaaaggaacggttaggagaa |
3656117 |
T |
|
| Q |
501 |
tagttccaattaaaaaggatgtcattgatgctgctgggatttgaaatgattttccaatgtggcgatccatagtggttgcctgtgataccgagagtgtcat |
600 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| || | |||||| || ||||| |||||||| |||| ||| | |
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|
| T |
3656118 |
tagttccgattaagaagacggtcattgatgctgctgggatttgaaatg---ttccaatttgacaatccatggttgttgcttgtgatactgagaatgttgt |
3656214 |
T |
|
| Q |
601 |
catttgaacttgaacagtccaaaacacgatggttgatgcccatat |
645 |
Q |
| |
|
||||||| | || | |||||||||| ||||||| |||||||| |
|
|
| T |
3656215 |
catttgagcatggattgtccaaaacattatggttgtggcccatat |
3656259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 9572101 - 9572228
Alignment:
| Q |
7 |
agcactcaacatagccaaaagccagtaataatcattaagcctcccttggttaagattatctgcaatccatggtttacttggacctgttattttattcact |
106 |
Q |
| |
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||||||||||| || ||||||||| ||| |||| |||||||||||||||||| | ||||| ||||||||| |||||||||||||||||| ||||| || |
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| T |
9572101 |
agcactcaacaaagtcaaaagccaagaatggtcat-aagcctcccttggttaaggtaatctgtaatccatggcttacttggacctgttattgtattccct |
9572199 |
T |
|
| Q |
107 |
gtagacactaataaagagctgaagaaaaa |
135 |
Q |
| |
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| |||| | ||||||| || |||||||| |
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|
| T |
9572200 |
gctgacagtgataaagaactaaagaaaaa |
9572228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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