View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17116_high_3 (Length: 559)
Name: NF17116_high_3
Description: NF17116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17116_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 38933258 - 38933027
Alignment:
| Q |
15 |
ataggtagcatgcaccttttaaattagaggaatgggttaagacagagagaagcagagaaagtgttagaaatcagaccctacaaaaagttatacggcaaat |
114 |
Q |
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| T |
38933258 |
ataggtagcatgcaccttttaaattagaggaatgggttaagacagagagaagcagagaaagtgttagaaatcagaccctacaaaaagttctacggcaaat |
38933159 |
T |
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| Q |
115 |
ggacaatttttccagtaatggatggatagatattagatagaggggtctaaaactacagttccttctttcttagtcggccattcataaatactaggtgggt |
214 |
Q |
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| T |
38933158 |
ggacaatttttccagtaatgga-----------tagatagaggggtctaaaactacagttccttctttcttagtcggccattcataaatactaggtgggt |
38933070 |
T |
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| Q |
215 |
ccaaaccataacaaaacaaaatatatgacataacacaaacaca |
257 |
Q |
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| T |
38933069 |
ccaaaccataacaaaacaaaatatatgacataacacaaacaca |
38933027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 381 - 462
Target Start/End: Complemental strand, 38932887 - 38932806
Alignment:
| Q |
381 |
cactccacccccataagacccgttcctaaaagccttctccacccttttcaactttctgcttctcctttgactctttcatttc |
462 |
Q |
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| T |
38932887 |
cactccacccccataagacccgttcctaaaagccttctccacccttttcaactttctgcttctcctttcactctttcatttc |
38932806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 38932989 - 38932954
Alignment:
| Q |
279 |
attatttgcttttcctttgttgtacctcatgtactg |
314 |
Q |
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| T |
38932989 |
attatttgcttttcctttgttgtacctcatgtactg |
38932954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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