View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17116_high_5 (Length: 444)
Name: NF17116_high_5
Description: NF17116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17116_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 27525822 - 27526243
Alignment:
| Q |
18 |
tttcaagatgccaaaacttttgcatcatgggtacttaaatgtttgttannnnnnnaatcttgtttcttagcatctaccaatcaattgctatgtaaccaat |
117 |
Q |
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| T |
27525822 |
tttcaagatgccaaaacttttgcatcatgggtacttaaatgtttgttatttttttaatcttgtttcttagcatctaccaatcaattgctatgtaaccaat |
27525921 |
T |
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| Q |
118 |
ggttcttttacttgattatagggcattgattatttgaagtatgataactgtaacaatgatggatcaaattccactgttaggtagtcaaaaatatacttgc |
217 |
Q |
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| T |
27525922 |
ggttcttttacttgattatagggaattgattacttgaagtatgataactgtaacaatgatggatcaaattccactgttaggtagtcaaaaatatacttgc |
27526021 |
T |
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| Q |
218 |
aatttctcttacaactagtgttgtatagttttttatgttataatacttcatgcataattttgaattccatggacttttatcttatcatacgtaattttga |
317 |
Q |
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| T |
27526022 |
aatttctcttactactagtgttgtatagttttttatgttaaaatacttcatgcataattttaaattccatggacttttatcttatcatacgtaattttga |
27526121 |
T |
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| Q |
318 |
actttggtttcgtaactcctttaatcctcaactcaaaccagttgaactcaaaccatgacattcttatatataggtatcctgttatgactcgggctttagc |
417 |
Q |
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| T |
27526122 |
actttggtttcgtaactcctttaatcctcaactcaaaccagttgaactcaaaccatgacattcttatatataggtatcctgttatgactcgggctttagc |
27526221 |
T |
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| Q |
418 |
gaaagcaggtcgtccaatcttc |
439 |
Q |
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| T |
27526222 |
gaaagcaggtcgtccaatcttc |
27526243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 27531383 - 27531606
Alignment:
| Q |
21 |
caagatgccaaaacttttgcatcatgggtactt-aaatgtttgttannnnnnn--aatcttgtttcttagcatctaccaatcaattgctatgtaaccaat |
117 |
Q |
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| T |
27531383 |
caagatgccaaaacttttgcatcatgggtacttcaaatattttttaattttttttaatcttgtttcttagcacttacctattaatatctatgtaaccaat |
27531482 |
T |
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| Q |
118 |
ggttcttttacttgattatagggcattgattatttgaagtatgataactgtaacaatgatggatcaaattccactgttaggtagtcaaaaatatacttgc |
217 |
Q |
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| T |
27531483 |
gcttattttgcttgataacagggcattgattatttgaagtatgataattgttacaatgatgaatcaaagcccactgtgaggtagtcaaaaatatatttgc |
27531582 |
T |
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| Q |
218 |
aatttctcttacaactagtgttgt |
241 |
Q |
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| T |
27531583 |
aattttgcatactactagtgttgt |
27531606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 27531672 - 27531733
Alignment:
| Q |
378 |
ttcttatatataggtatcctgttatgactcgggctttagcgaaagcaggtcgtccaatcttc |
439 |
Q |
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| T |
27531672 |
ttcttatgtataggtatcctgttatgactcgcgctttaatgaaggcaggtcgtccaatcttc |
27531733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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