View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17116_low_2 (Length: 567)
Name: NF17116_low_2
Description: NF17116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17116_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 92 - 533
Target Start/End: Complemental strand, 41139075 - 41138636
Alignment:
| Q |
92 |
tgttcttctaatcactactatgtggcgatggaacgtaccaatggtataggaagnnnnnnncgtgttccttaaatgttgcttaatttcttactattaaact |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41139075 |
tgttcttctaatcactactatgtggcgatggaacgtaccaatggtataggaagaaaaaaacgtgttccttaaatgttgcttaatttcttactattaaact |
41138976 |
T |
|
| Q |
192 |
gaaatatgtttgagttctttattttctcttcattggagatgttggctttaattaattgaactcccttctttttattgcaaacatcacctgtattataatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41138975 |
gaaatatgtttgagttctttattttctcttcattggagatgttg-ctttaattaattgaactcccttctttttattgcaaacatcacttgtattataatg |
41138877 |
T |
|
| Q |
292 |
tgccaacatattattcgagtgaggtaaatcaaaatgattcgacaaagataaattattattgatcaactgtagagattttataaatagaacatgataaaca |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
41138876 |
tgccaacatattattcgagtgaggtaaatcaaaattattcgacaaagataaattattgttgatcaactgtagatattttataaatagaacatgataaata |
41138777 |
T |
|
| Q |
392 |
agttatatatagatttgaaactaaaaccttattatatactactcaaatgaacaaacctttgatcaataaaccaatgtaattagtggcttcattttattac |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41138776 |
agttatatatagatttgaaactaaaaccttattatatactactcaaatgaacaaacctttgatcaataaaccaatgtaattagtggcttcattttattac |
41138677 |
T |
|
| Q |
492 |
atttcaataacataaataattggctacatttttcaaattttg |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41138676 |
atttcaataacataaataattggctaca-ttttcaaattttg |
41138636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41139313 - 41139219
Alignment:
| Q |
1 |
taaaaacatggtcagcagttcaatttttaactcttccatatgnnnnnnnnntccgattaaaatgaggaaaacttatcttatgtatctcacatgtt |
95 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41139313 |
taaaaatatggtcagcagttcaatttttaactcttgcatatgaaaataaaatccgattaaaatgaggaaaacttattttatgtatctcacatgtt |
41139219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University