View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17116_low_4 (Length: 531)

Name: NF17116_low_4
Description: NF17116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17116_low_4
NF17116_low_4
[»] chr7 (37 HSPs)
chr7 (20-521)||(30106879-30107379)
chr7 (249-329)||(3178311-3178393)
chr7 (155-239)||(2850882-2850966)
chr7 (253-331)||(34100658-34100736)
chr7 (249-327)||(37245634-37245712)
chr7 (163-285)||(39308580-39308706)
chr7 (183-234)||(39452393-39452444)
chr7 (249-327)||(25571364-25571441)
chr7 (117-203)||(30546318-30546404)
chr7 (114-224)||(39005480-39005590)
chr7 (155-228)||(21759985-21760058)
chr7 (249-327)||(36790682-36790762)
chr7 (166-214)||(6855254-6855302)
chr7 (163-239)||(27921032-27921108)
chr7 (163-239)||(42935705-42935781)
chr7 (249-327)||(759198-759276)
chr7 (173-216)||(17609349-17609392)
chr7 (173-216)||(17609592-17609635)
chr7 (173-216)||(17609835-17609878)
chr7 (173-216)||(17610078-17610121)
chr7 (173-216)||(17610321-17610364)
chr7 (177-297)||(17610561-17610693)
chr7 (249-327)||(34947444-34947522)
chr7 (249-327)||(42935602-42935680)
chr7 (153-216)||(44180272-44180335)
chr7 (235-285)||(40614737-40614787)
chr7 (168-205)||(6611299-6611336)
chr7 (249-327)||(21350732-21350811)
chr7 (163-216)||(38391815-38391868)
chr7 (251-327)||(7457530-7457605)
chr7 (183-239)||(7463257-7463313)
chr7 (251-291)||(16904359-16904399)
chr7 (163-239)||(28202318-28202394)
chr7 (236-276)||(30546449-30546489)
chr7 (168-204)||(31665730-31665766)
chr7 (236-327)||(32346146-32346237)
chr7 (183-239)||(34947544-34947600)
[»] chr2 (25 HSPs)
chr2 (127-292)||(38187847-38188024)
chr2 (249-331)||(5272237-5272318)
chr2 (249-327)||(5789746-5789823)
chr2 (249-327)||(36354541-36354618)
chr2 (249-327)||(17695265-17695345)
chr2 (155-222)||(34120431-34120498)
chr2 (184-239)||(34225627-34225682)
chr2 (249-327)||(9458364-9458441)
chr2 (236-329)||(43410361-43410454)
chr2 (183-264)||(1206723-1206804)
chr2 (160-209)||(5528110-5528158)
chr2 (183-327)||(16463624-16463782)
chr2 (183-239)||(16805918-16805974)
chr2 (183-239)||(16845199-16845255)
chr2 (249-327)||(35313824-35313902)
chr2 (183-237)||(11367118-11367172)
chr2 (249-327)||(37322366-37322443)
chr2 (113-239)||(38763585-38763711)
chr2 (236-313)||(16028267-16028343)
chr2 (158-239)||(36354438-36354519)
chr2 (249-327)||(45235516-45235596)
chr2 (183-239)||(8947072-8947128)
chr2 (183-239)||(14523392-14523448)
chr2 (183-239)||(37322465-37322521)
chr2 (183-239)||(45235618-45235674)
[»] chr5 (26 HSPs)
chr5 (153-239)||(7827916-7828002)
chr5 (249-327)||(6753966-6754044)
chr5 (132-210)||(16319875-16319953)
chr5 (158-239)||(6753654-6753734)
chr5 (249-327)||(6315875-6315953)
chr5 (163-214)||(18890555-18890606)
chr5 (249-327)||(19929883-19929961)
chr5 (164-239)||(41062161-41062236)
chr5 (249-327)||(41496017-41496095)
chr5 (174-220)||(31299398-31299444)
chr5 (158-239)||(40530219-40530300)
chr5 (183-239)||(1248624-1248680)
chr5 (187-239)||(21060667-21060719)
chr5 (183-239)||(27580637-27580693)
chr5 (163-214)||(29412043-29412094)
chr5 (168-222)||(4441075-4441129)
chr5 (158-216)||(5129227-5129285)
chr5 (183-237)||(11761319-11761372)
chr5 (158-239)||(4818588-4818669)
chr5 (158-239)||(8493833-8493914)
chr5 (160-204)||(16181760-16181804)
chr5 (162-214)||(26285477-26285529)
chr5 (158-222)||(37184074-37184138)
chr5 (183-239)||(40899955-40900011)
chr5 (249-302)||(41478745-41478800)
chr5 (249-302)||(41480111-41480166)
[»] chr6 (31 HSPs)
chr6 (158-239)||(24983445-24983526)
chr6 (158-222)||(4581977-4582041)
chr6 (163-223)||(7072213-7072273)
chr6 (183-234)||(32440666-32440717)
chr6 (246-332)||(12307691-12307776)
chr6 (249-331)||(15058051-15058132)
chr6 (186-239)||(3291792-3291845)
chr6 (125-198)||(6698973-6699046)
chr6 (158-239)||(15058154-15058235)
chr6 (163-223)||(1063604-1063664)
chr6 (163-239)||(11655947-11656023)
chr6 (163-239)||(30716937-30717013)
chr6 (143-202)||(2423692-2423751)
chr6 (249-327)||(7920178-7920254)
chr6 (137-208)||(20526460-20526531)
chr6 (168-214)||(16464446-16464492)
chr6 (158-216)||(23397617-23397675)
chr6 (253-332)||(34299926-34300006)
chr6 (184-234)||(34300037-34300087)
chr6 (158-239)||(1781839-1781920)
chr6 (158-239)||(6834365-6834446)
chr6 (158-239)||(13087567-13087648)
chr6 (249-327)||(29363241-29363321)
chr6 (163-239)||(6801968-6802044)
chr6 (183-239)||(11143608-11143664)
chr6 (183-239)||(13909461-13909517)
chr6 (163-239)||(21010214-21010290)
chr6 (248-327)||(24983547-24983624)
chr6 (248-325)||(27367523-27367602)
chr6 (248-325)||(27457870-27457949)
chr6 (156-216)||(31894204-31894264)
[»] chr4 (35 HSPs)
chr4 (183-331)||(46396911-46397059)
chr4 (153-239)||(42517636-42517722)
chr4 (249-327)||(35311329-35311409)
chr4 (183-239)||(5841455-5841511)
chr4 (163-239)||(47773027-47773103)
chr4 (168-239)||(17512352-17512423)
chr4 (183-327)||(28500919-28501069)
chr4 (158-239)||(11907602-11907683)
chr4 (158-239)||(38405105-38405186)
chr4 (249-331)||(43237174-43237258)
chr4 (158-239)||(49428345-49428426)
chr4 (183-239)||(17114477-17114533)
chr4 (155-239)||(17237296-17237380)
chr4 (251-327)||(34360592-34360668)
chr4 (183-239)||(36985823-36985879)
chr4 (163-239)||(38502490-38502566)
chr4 (236-327)||(42616996-42617087)
chr4 (251-332)||(49176042-49176124)
chr4 (184-239)||(3689599-3689654)
chr4 (249-329)||(16821437-16821518)
chr4 (153-216)||(35380331-35380394)
chr4 (144-238)||(39157862-39157957)
chr4 (168-239)||(49746998-49747069)
chr4 (158-239)||(2066826-2066907)
chr4 (165-214)||(32469958-32470007)
chr4 (158-239)||(33790734-33790815)
chr4 (249-327)||(38405208-38405287)
chr4 (249-327)||(49746897-49746976)
chr4 (158-239)||(52859802-52859883)
chr4 (278-327)||(52859930-52859978)
chr4 (158-239)||(53412145-53412226)
chr4 (158-234)||(5618584-5618660)
chr4 (183-239)||(16821359-16821415)
chr4 (174-214)||(25734660-25734700)
chr4 (155-239)||(49175934-49176018)
[»] chr3 (24 HSPs)
chr3 (158-239)||(24569097-24569178)
chr3 (183-239)||(30190682-30190738)
chr3 (249-327)||(10366749-10366827)
chr3 (155-241)||(37772958-37773044)
chr3 (236-326)||(39043844-39043932)
chr3 (120-222)||(52206806-52206908)
chr3 (183-239)||(34750533-34750589)
chr3 (183-239)||(34957540-34957596)
chr3 (163-239)||(36476621-36476697)
chr3 (249-292)||(8679154-8679197)
chr3 (249-327)||(19822948-19823026)
chr3 (249-292)||(31158611-31158654)
chr3 (249-327)||(36460516-36460594)
chr3 (249-332)||(38795276-38795359)
chr3 (183-234)||(44301604-44301655)
chr3 (158-236)||(10366639-10366717)
chr3 (158-239)||(8679051-8679132)
chr3 (158-239)||(37311987-37312068)
chr3 (158-239)||(37695663-37695744)
chr3 (158-239)||(43253860-43253941)
chr3 (249-327)||(43253963-43254042)
chr3 (158-234)||(12736569-12736645)
chr3 (114-202)||(38374670-38374758)
chr3 (183-239)||(53560254-53560310)
[»] chr8 (32 HSPs)
chr8 (160-216)||(15809982-15810038)
chr8 (158-237)||(7703154-7703233)
chr8 (249-327)||(13335154-13335231)
chr8 (185-239)||(17719283-17719337)
chr8 (163-239)||(4924070-4924146)
chr8 (168-216)||(44648540-44648588)
chr8 (249-329)||(14855035-14855117)
chr8 (158-239)||(10179945-10180026)
chr8 (158-239)||(31271058-31271139)
chr8 (158-239)||(39482652-39482733)
chr8 (158-239)||(42972506-42972587)
chr8 (180-224)||(13831615-13831659)
chr8 (142-202)||(27966464-27966524)
chr8 (142-202)||(27976875-27976935)
chr8 (142-202)||(28034144-28034204)
chr8 (183-239)||(34393977-34394033)
chr8 (244-327)||(40109650-40109732)
chr8 (184-239)||(31082656-31082711)
chr8 (249-326)||(17719359-17719436)
chr8 (249-332)||(36006988-36007073)
chr8 (281-331)||(396742-396794)
chr8 (158-239)||(1875590-1875671)
chr8 (249-325)||(1875840-1875916)
chr8 (158-239)||(9300111-9300192)
chr8 (170-239)||(36006897-36006966)
chr8 (155-204)||(45425661-45425710)
chr8 (163-223)||(4428354-4428414)
chr8 (183-239)||(7672364-7672420)
chr8 (142-202)||(27871091-27871151)
chr8 (142-202)||(27883251-27883311)
chr8 (142-202)||(28023430-28023490)
chr8 (183-239)||(44761517-44761573)
[»] scaffold0159 (1 HSPs)
scaffold0159 (249-327)||(34119-34196)
[»] scaffold0110 (1 HSPs)
scaffold0110 (163-241)||(1739-1817)
[»] chr1 (43 HSPs)
chr1 (158-239)||(6160459-6160540)
chr1 (158-239)||(23168993-23169074)
chr1 (249-327)||(24991756-24991835)
chr1 (252-327)||(12039019-12039094)
chr1 (163-239)||(45331378-45331454)
chr1 (155-234)||(31042839-31042918)
chr1 (164-239)||(49223992-49224067)
chr1 (249-327)||(4659714-4659791)
chr1 (137-202)||(11642239-11642304)
chr1 (183-239)||(917061-917117)
chr1 (183-239)||(7351673-7351729)
chr1 (249-329)||(11449822-11449900)
chr1 (163-266)||(35538653-35538756)
chr1 (183-239)||(36701958-36702014)
chr1 (183-239)||(36718062-36718118)
chr1 (163-239)||(40144852-40144928)
chr1 (183-239)||(41121850-41121906)
chr1 (249-327)||(6785193-6785271)
chr1 (137-216)||(15444460-15444539)
chr1 (249-292)||(35682897-35682940)
chr1 (249-327)||(39864048-39864126)
chr1 (280-327)||(49224121-49224167)
chr1 (158-216)||(10495898-10495956)
chr1 (158-224)||(16395047-16395113)
chr1 (251-329)||(27721468-27721545)
chr1 (183-217)||(28092571-28092605)
chr1 (183-225)||(43614448-43614490)
chr1 (183-285)||(44122203-44122308)
chr1 (235-327)||(7759152-7759244)
chr1 (163-228)||(22181384-22181449)
chr1 (158-239)||(26093431-26093512)
chr1 (163-216)||(27687301-27687354)
chr1 (158-239)||(30754941-30755022)
chr1 (158-223)||(32970567-32970632)
chr1 (243-327)||(33733359-33733443)
chr1 (158-239)||(39864148-39864229)
chr1 (183-239)||(15699159-15699215)
chr1 (163-239)||(20209845-20209921)
chr1 (158-234)||(28749033-28749109)
chr1 (156-212)||(33131585-33131641)
chr1 (155-239)||(34031524-34031608)
chr1 (183-239)||(37276498-37276554)
chr1 (236-327)||(37506061-37506152)
[»] scaffold0294 (1 HSPs)
scaffold0294 (155-239)||(17072-17156)
[»] scaffold1809 (1 HSPs)
scaffold1809 (249-327)||(784-861)
[»] scaffold0330 (2 HSPs)
scaffold0330 (249-327)||(5329-5405)
scaffold0330 (153-239)||(5427-5513)
[»] scaffold1391 (1 HSPs)
scaffold1391 (158-239)||(1814-1895)
[»] scaffold0328 (1 HSPs)
scaffold0328 (163-239)||(7983-8059)
[»] scaffold0018 (1 HSPs)
scaffold0018 (183-239)||(136059-136115)


Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Complemental strand, 30107379 - 30106879
Alignment:
Q  20 ataagtcttgaagaggttggatagctcaattcgtttgagctaaaggttgaaggagttgaagggctcgggtttaacctagcaagttaacaacaactactcc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30107379 ataagtcttgaagaggttggatagctcaattcgtttgagctaaaggttgaaggagttgaagggctcgggtttaacctagcaagttaacaacaactactcc 30107280  T
Q  120 ctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaa 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30107279 ctccatctcaatttagttgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattaatattatttacttaa 30107180  T
Q  220 atacccttatgaattatagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgaca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30107179 atacccttatgaattatagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgaca 30107080  T
Q  320 attattttaagaccgatnnnnnnnntgcagaagtgactattattatgaaacagagcggagtaattactaacaattgtttatccaatttttgttttaaaca 419  Q
    ||||||||||||| |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  30107079 attattttaagacggat-aaaaaaatgcagaagtgactattattatgaaacagagcggagtaattactaacaattgtttgtccaatttttgatttaaaca 30106981  T
Q  420 agctaaataatataagtcatttatcctaagccatctatagtatagatacatcttcattcctatgctgaaaatcaagcacaaaacataatgaatcaagtat 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30106980 agctaaataatataagtcatttatcctaagccatctatagtatagatacatcttcattcctatgctgaaaatcaagcacaaaacataatgaatcaagtat 30106881  T
Q  520 aa 521  Q
    ||    
T  30106880 aa 30106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 3178311 - 3178393
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaa-ataataaa-atgttgcattagtatcctaaggtgacaattattttaa 329  Q
    ||||||||||||||||| ||||||| | ||| |||| |||||||| ||||||||||||||| |||| || |||||||||||||    
T  3178311 tgaaattcaataaataagggtatattaatgggaaaacataataaatatgttgcattagtattctaaagtaacaattattttaa 3178393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 2850882 - 2850966
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||| ||||| |||| |||| ||  |||||||| |||| |||||||| ||||||||||| ||||||||| || |||||||||    
T  2850882 catgattattaaggaaatgattaattatgttgatttcaatgataaaattaatattatttactaaaataccctcattaattatagt 2850966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 34100658 - 34100736
Alignment:
Q  253 attcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattattttaaga 331  Q
    ||||||||||||| ||||||  |||| ||||| |||||||| ||||||||||||||  ||| ||||||||||||||||||    
T  34100658 attcaataaataagggtataatagtgaaaaaacataataaa-tgttgcattagtattgtaaagtgacaattattttaaga 34100736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 37245712 - 37245634
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtg-gaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  |||| |||||||||||||| ||||||||| ||||  ||| ||||||||||||||    
T  37245712 tgaaattcaataaataagggtataatagtgagaaaaaataataaa-tgttgcattggtattgtaaagtgacaattatttt 37245634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 39308706 - 39308580
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatga-at-ta--tagtcaagtagagtgaaattcaa 258  Q
    |||||||||| ||||| | ||||||||||||| ||||||||| ||||||||||| ||| |||| ||| | || ||  |||| |||| |||||||||||||    
T  39308706 ttaagaaaatgattagatgagttgattttaatagtaaaattaatattatttactaaaacacccctattacatgtaagtagttaagttgagtgaaattcaa 39308607  T
Q  259 taaataatggtatatgagtggaaaaaa 285  Q
    || |||| | ||||| | |||||||||    
T  39308606 tagataaagatatattaatggaaaaaa 39308580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 39452444 - 39452393
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  39452444 gttgattttaatggtaaaattaatatcatttactaaaatacccttattaatt 39452393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 25571441 - 25571364
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | |  ||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  25571441 tgaaattcaataaataagggtataataattaaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 25571364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 30546318 - 30546404
Alignment:
Q  117 tccctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaatt 203  Q
    ||||||| |||||||||||||||||| |||| ||| ||| || ||| ||||||||| ||||| || ||||| || ||||| ||||||    
T  30546318 tccctccgtctcaatttaattgtcacgtttggattgtacgtggttcctaagaaaatgattagattggttgagttcaatggaaaaatt 30546404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 39005590 - 39005480
Alignment:
Q  114 tactccctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattattt 213  Q
    ||||| |||| |||||  |||| |||||||||||  || | |||| ||||| |  |||| ||||||| ||||||||  ||||||||||||||||| ||||    
T  39005590 tactctctccgtctcatattaagtgtcacatttgggttgtgcatggttcttgatgaaattattagttgagttgattaaaatggtaaaattagtatcattt 39005491  T
Q  214 acttaaatacc 224  Q
    ||| |||||||    
T  39005490 actaaaatacc 39005480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 21759985 - 21760058
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaataccctta 228  Q
    ||||||| |||||||||| |||| ||  ||||||||| |||||||||||||||| ||||| | ||| |||||||    
T  21759985 catgattattaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttaataaaacaccctta 21760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 36790762 - 36790682
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||||||||||||||  ||||| ||||||  ||| |||| ||||||||||||||    
T  36790762 tgaaattcaataaataagggtataataatggaaaaaataataataaatgctgcattgctattctaaagtgacaattatttt 36790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 6855302 - 6855254
Alignment:
Q  166 agaaaataattagtttagttgattttaatggtaaaattagtattattta 214  Q
    ||||||| ||||||| | || ||||||||||||||||||||||||||||    
T  6855302 agaaaatgattagttgaatttattttaatggtaaaattagtattattta 6855254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 27921108 - 27921032
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  |||||||||||||||||||||||||| ||||| | ||| || ||||| |||| ||||    
T  27921108 ttaagaaaatgattaattatgttgattttaatggtaaaattagtatcatttattaaaacactcttattaattgtagt 27921032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 42935781 - 42935705
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  ||||||||| |||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  42935781 ttaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagt 42935705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 759198 - 759276
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtgg-aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||| |||||||||| ||||| |||||| |||| |||| ||||||||||||||    
T  759198 tgaaattcaataaataagggtataataatggaaaaaaataat-aaatgctgcattggtattctaaagtgacaattatttt 759276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 17609349 - 17609392
Alignment:
Q  173 aattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  17609349 aattaattgagttgattttaatggtaaaattagtataatttact 17609392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 17609592 - 17609635
Alignment:
Q  173 aattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  17609592 aattaattgagttgattttaatggtaaaattagtataatttact 17609635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 17609835 - 17609878
Alignment:
Q  173 aattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  17609835 aattaattgagttgattttaatggtaaaattagtataatttact 17609878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 17610078 - 17610121
Alignment:
Q  173 aattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  17610078 aattaattgagttgattttaatggtaaaattagtataatttact 17610121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 17610321 - 17610364
Alignment:
Q  173 aattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  17610321 aattaattgagttgattttaatggtaaaattagtataatttact 17610364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 17610561 - 17610693
Alignment:
Q  177 agtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt------------atagtcaagtagagtgaaattcaataaata 264  Q
    |||| ||||||||||||||||||||||||||| ||||| | |||||  ||||| ||||            ||||| || |||||||||||||||||||||    
T  17610561 agttgagttgattttaatggtaaaattagtataatttattaaaatattcttattaattttaattagtgaaatagttaattagagtgaaattcaataaata 17610660  T
Q  265 atggtatatgagtggaaaaaataataaaatgtt 297  Q
      | ||||| ||||||||||||||  |||||||    
T  17610661 gggatatattagtggaaaaaataaataaatgtt 17610693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 34947522 - 34947444
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||| | ||||||  | ||||||||| ||||||| ||||||||| |||| |||| ||||||||||||||    
T  34947522 tgaaattcaataaatgagggtataataatggaaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 34947444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 42935680 - 42935602
Alignment:
Q  249 tgaaattcaataaataatggtat-atgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||| ||||||||||||  |||| || | |||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  42935680 tgaagttcaataaataagagtattataattggaaaaaataataaa-tgttgcatttgtattctaaagtgacaattatttt 42935602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 44180335 - 44180272
Alignment:
Q  153 tacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||| |||| |||||||||| |||| ||  |||||||| ||||||||||||||||| |||||||    
T  44180335 tacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtataatttact 44180272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 40614737 - 40614787
Alignment:
Q  235 atagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa 285  Q
    ||||||||| ||||||||||||||| ||| | ||||||||||||| |||||    
T  40614737 atagtcaagaagagtgaaattcaatgaatgaaggtatatgagtgggaaaaa 40614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 6611336 - 6611299
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaattag 205  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  6611336 aaaataattagtttagttgatttcaatgataaaattag 6611299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 21350732 - 21350811
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtgg--aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  |||||  |||||||||| ||||| |||||| ||||  ||| ||||||||||||||    
T  21350732 tgaaattcaataaataagggtataatagtggaaaaaaaataat-aaatgctgcattggtattgtaaagtgacaattatttt 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 38391868 - 38391815
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||||||||| |||| ||  ||||||||| |||||||||||||||| |||||||    
T  38391868 ttaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttact 38391815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 7457530 - 7457605
Alignment:
Q  251 aaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||||||||||||||  |||||  ||||||||||||||| ||||||||||||  |||  ||| |||| |||||||||    
T  7457530 aaattcaataaataagagtataatagtggaaaaaataat-aaatgttgcattgatattgtaaagtgataattatttt 7457605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 7463313 - 7463257
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| |||| |||||||||||  ||||||||||||||||| || |||| ||||    
T  7463313 gttgatttcaatgataaaattagtagcatttacttaaataccctcattaattgtagt 7463257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 16904399 - 16904359
Alignment:
Q  251 aaattcaataaataatggtatatgagtggaaaaaataataa 291  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  16904399 aaattcaataaataagggtataatagtggaaaaaataataa 16904359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 28202318 - 28202394
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||||||||| ||  ||||||||| |||||||||||| | | ||||||| ||| | |||||| |||| ||||    
T  28202318 ttaagaaaataattaattgtgttgattttgatggtaaaattaatgtcatttactaaaacatccttattaattgtagt 28202394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 30546449 - 30546489
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgag 276  Q
    |||| |||| |||||||||||||||||||| ||||||||||    
T  30546449 tagttaagtggagtgaaattcaataaataagggtatatgag 30546489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 31665730 - 31665766
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaatta 204  Q
    |||||||||||||  ||||||||||||||||||||||    
T  31665730 aaaataattagttgtgttgattttaatggtaaaatta 31665766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 32346146 - 32346237
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||| |||| || ||||||||||||||||| ||||||  | |||||||| ||||| ||||| ||||||||||| ||||  ||| |||||||||    
T  32346146 tagttaagttgaatgaaattcaataaataagggtataataatggaaaaagataat-aaatgctgcattagtattctaaaatgataattatttt 32346237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 34947600 - 34947544
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  34947600 gttgatttcaatggtaaaattattatcatttactaaaacacccttattaattgtagt 34947544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 292
Target Start/End: Original strand, 38187847 - 38188024
Alignment:
Q  127 tcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaataccct 226  Q
    ||||||||||||||||||||| | | | | || ||||||   ||||| ||||||| ||||| |||||||||||||||||| | ||||||| ||| ||||     
T  38187847 tcaatttaattgtcacatttggaatgtgcgtggttcttacagaaatatttagtttggttgactttaatggtaaaattagtttaatttactaaaacacccc 38187946  T
Q  227 tatgaattatagtca------------agtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaa 292  Q
    ||| |||| |||| |            |||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  38187947 tattaattgtagttagtcgagtatgtaagtgaagtgaaattcaataaataatggtatatgagtggaaaaattaataaa 38188024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 5272237 - 5272318
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaaga 331  Q
    ||||||||||||||||| ||||||  | ||| |||||||||||| ||||||||| |||| |||| ||||||||||||||||||    
T  5272237 tgaaattcaataaataagggtataataatgggaaaaataataaa-tgttgcatttgtattctaaagtgacaattattttaaga 5272318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 5789746 - 5789823
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||  |||  ||| ||||||||||||||    
T  5789746 tgaaattcaataaataatggtataatagtggaaaaaataat-aaatgatgcattgatattgtaaagtgacaattatttt 5789823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 36354541 - 36354618
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||  |||||| |||| |||| ||||||||||||||    
T  36354541 tgaaattcaataaataatggtataataatggaaaaaataat-aaattctgcattggtattctaaagtgacaattatttt 36354618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 17695345 - 17695265
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  ||||||||||||||||  ||||| ||||||  ||| |||| ||||||||||||||    
T  17695345 tgaaattcaataaataagggtataatagtggaaaaaataataataaatgctgcattgatattctaaagtgacaattatttt 17695265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 34120431 - 34120498
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaata 222  Q
    ||||||| |||||||||| |||| ||  ||||||||| ||||||||| |||||||||||||| |||||    
T  34120431 catgattattaagaaaatgattaattgtgttgattttgatggtaaaactagtattatttactaaaata 34120498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 34225682 - 34225627
Alignment:
Q  184 ttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||| |||| ||||    
T  34225682 ttgattttaatggtaaacttagtattatttactaaaacacccttattaattgtagt 34225627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 9458364 - 9458441
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||| ||||||||| ||||||  | ||||||||||||| ||||| |||||| |||| |||| ||||||||||||||    
T  9458364 tgaaatttaataaataagggtataataatggaaaaaataat-aaatgctgcattggtattctaaagtgacaattatttt 9458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 43410454 - 43410361
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattattttaa 329  Q
    |||| |||| || ||||||||||||||| |  |||||  | ||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||    
T  43410454 tagttaagttgaatgaaattcaataaatgagagtataataatggaaaaaaataataaa-tgttgcattagtattctaaagtgacaattattttaa 43410361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 1206723 - 1206804
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaata 264  Q
    |||||||| | ||||||||||||||  ||||||| ||||| |||||| |||| |||| |||| |  ||||||||||||||||    
T  1206723 gttgatttcagtggtaaaattagtaacatttactaaaatatccttattaattgtagttaagttggatgaaattcaataaata 1206804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 5528110 - 5528158
Alignment:
Q  160 ttcttaagaaaataattagtttagttgattttaatggtaaaattagtatt 209  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  5528110 ttcttaagaaaataattagtt-agttgatttcaatggtaaaattaatatt 5528158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 327
Target Start/End: Complemental strand, 16463782 - 16463624
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagtca-------agtagag-----tgaaattcaataaataatggta 270  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||||||| |||| |||| |       |||| ||     ||||||| ||||||||||||||    
T  16463782 gttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagtagtaaagtttgatgaaatttaataaataatggta 16463683  T
Q  271 tatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 327  Q
     |  | ||||||||||||||  ||||| |||||| |||| |||| ||||||||||||||    
T  16463682 aaataatggaaaaaataataataaatgctgcattggtattctaaagtgacaattatttt 16463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 16805974 - 16805918
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||| ||||||||||||| ||||||| ||||| |||||| |||| ||||    
T  16805974 gttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagt 16805918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 16845255 - 16845199
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||| ||||||||||||| ||||||| ||||| |||||| |||| ||||    
T  16845255 gttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagt 16845199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 35313902 - 35313824
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||||||||||||||||  |||||  ||||||||||| ||||||| |||||||||| |||  ||| ||||||||||||||    
T  35313902 tgaaattcaataaataagagtataatagtggaaaaaagtaataaa-tgttgcattattattgtaaagtgacaattatttt 35313824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 11367172 - 11367118
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattata 237  Q
    |||||||||||| ||||||||| | | ||||||||||||||| |||| |||||||    
T  11367172 gttgattttaattgtaaaattaatgtcatttacttaaatacctttattaattata 11367118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 37322443 - 37322366
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||||||||||||| ||||| | |||  |||| |||| ||||||||||||||    
T  37322443 tgaaattcaataaataagggtataataatggaaaaaataat-aaatgctacataggtattctaaagtgacaattatttt 37322366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 38763711 - 38763585
Alignment:
Q  113 ctactccctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatt 212  Q
    ||||||||||| |||||| |||  |||| | ||||| ||||||| | || ||||| ||||  |||||   ||||||||||||||||||||  || | |||    
T  38763711 ctactccctccgtctcaaattaggtgtcccttttgagttttacacggttattaaggaaatggttagtagtgttgattttaatggtaaaatgtgtttcatt 38763612  T
Q  213 tacttaaatacccttatgaattatagt 239  Q
    |||| |||||| | ||| |||||||||    
T  38763611 tactaaaatactcatattaattatagt 38763585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 16028343 - 16028267
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaag 313  Q
    |||| |||| ||||||||||||||||||||  |||||  |||| ||||||| || ||||||||||||| ||| |||||    
T  16028343 tagttaagtggagtgaaattcaataaataaatgtataatagtgaaaaaaattat-aaatgttgcattaatattctaag 16028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 36354438 - 36354519
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| | |||||  ||||||||| |||||||||||||||||||||| | ||| || ||||| |||| ||||    
T  36354438 gattattaaggaaatgactagttgtgttgattttgatggtaaaattagtattatttattgaaacactcttattaattgtagt 36354519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 45235596 - 45235516
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataa--aatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| | ||||  | || ||||||||||||  ||||||||||| ||||  ||| ||||||||||||||    
T  45235596 tgaaattcaataaataaggatatagtaatgaaaaaaataataataaatgttgcattggtattataaagtgacaattatttt 45235516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 8947072 - 8947128
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| |||| ||||||||||| |||||||| ||| | |||||| |||||||||    
T  8947072 gttgatttcaatgataaaattagtaatatttactaaaacatccttattaattatagt 8947128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 14523392 - 14523448
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||||| ||||| |||||| |||| ||||    
T  14523392 gttgatttcaatggtaaaattaatatcatttactaaaatatccttattaattgtagt 14523448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 37322521 - 37322465
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||| | |||||||||||| |||| ||||    
T  37322521 gttgatttcaatggtaaaattaatatcatttattaaaatacccttattaattgtagt 37322465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 45235674 - 45235618
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  45235674 gttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagt 45235618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 7827916 - 7828002
Alignment:
Q  153 tacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||| ||||||||||||||| ||  |||||||| ||||||||||||||||| ||||| | |||||||||||| |||| ||||    
T  7827916 tacacgattattaagaaaataattaattgtgttgatttcaatggtaaaattagtatcatttattaaaatacccttattaattgtagt 7828002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 6754044 - 6753966
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| |||||||   ||||||||| || ||||||||||||| ||||  ||| ||||||||||||||    
T  6754044 tgaaattcaataaataagggtatattgatggaaaaaaaaaaaaaatgttgcattggtattataaagtgacaattatttt 6753966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 16319875 - 16319953
Alignment:
Q  132 ttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtatta 210  Q
    ||||||||||| ||| | || | | |||||||||||||||||||||||| ||||||||||| |||| |||||| |||||    
T  16319875 ttaattgtcacgtttaagttgtgcgtgattcttaagaaaataattagttgagttgattttattggtgaaattaatatta 16319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 6753654 - 6753734
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| |||| || |||| ||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  6753654 gattattaagaaaatgattaattta-ttaatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagt 6753734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 6315875 - 6315953
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  6315875 tgaaattcaataaataagggtataataatggaaaataataataaa-tgttgcattggtattctaaagtgacaattatttt 6315953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 18890555 - 18890606
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattattta 214  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||| |||||    
T  18890555 ttaagaaaatgattagttgagttgtttttaatggtaaaattagtatcattta 18890606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 19929961 - 19929883
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  19929961 tgaaattcaataaataagggtataataatggaaaataataataaa-tgttgcattggtattctaaagtgacaattatttt 19929883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 41062161 - 41062236
Alignment:
Q  164 taagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||||| ||  ||||||||| ||| |||||||||||| ||||||| ||| |||||||| |||| ||||    
T  41062161 taagaaaataattaattatgttgattttgatgataaaattagtatcatttactaaaacacccttattaattgtagt 41062236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 41496095 - 41496017
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||||| |||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||  ||| ||||||||||||||    
T  41496095 tgaaatgcaataaataaaggtataatagtggaaaagaataataaa-tgttgcattagtattgtaaagtgacaattatttt 41496017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 31299444 - 31299398
Alignment:
Q  174 attagtttagttgattttaatggtaaaattagtattatttacttaaa 220  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||    
T  31299444 attagtttagttaattttaatggtaaaatttgtgttatttacttaaa 31299398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 40530219 - 40530300
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  |||||||| ||||||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  40530219 gattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagt 40530300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 1248624 - 1248680
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  1248624 gttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagt 1248680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 21060719 - 21060667
Alignment:
Q  187 attttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| |||||||||||||||||||||||| |||||| ||||| |||| ||||    
T  21060719 attttgatggtaaaattagtattatttactaaaatactcttattaattgtagt 21060667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 27580693 - 27580637
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  27580693 gttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagt 27580637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 29412043 - 29412094
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattattta 214  Q
    |||| |||||||||||||   ||||||||||||||||||||||||| |||||    
T  29412043 ttaaaaaaataattagttcgattgattttaatggtaaaattagtatgattta 29412094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 4441129 - 4441075
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaattagtattatttacttaaata 222  Q
    |||||||||| ||  ||||||||||||| |||||||| ||||||||||| |||||    
T  4441129 aaaataattaattgtgttgattttaatgataaaattaatattatttactaaaata 4441075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 5129227 - 5129285
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||||||||||||||||||||||   ||| ||| ||||||||||||| ||| |||||||    
T  5129227 gattcttaagaaaataattagttgcattggtttgaatggtaaaattaatataatttact 5129285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 11761319 - 11761372
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattata 237  Q
    |||||||||||||||||||||||||| | ||||| |||||| ||||| |||||||    
T  11761319 gttgattttaatggtaaaattagtatca-ttactaaaatactcttataaattata 11761372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 4818669 - 4818588
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| ||||||||| ||  |||||||| ||| ||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  4818669 gattattaaggaaataattaattgtgttgatttcaattgtaaaattagtagcatttactaaaacacccttattaattgtagt 4818588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 8493833 - 8493914
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||| ||||||||||  ||| |||| ||| ||||||||||||| ||||| | | |||| ||||| |||| ||||    
T  8493833 gattcttaagaatataattagttgggttaatttcaatcgtaaaattagtatgatttattaatatactcttattaattttagt 8493914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 16181760 - 16181804
Alignment:
Q  160 ttcttaagaaaataattagtttagttgattttaatggtaaaatta 204  Q
    ||||||||||||| ||||||| | ||||||| |||||||||||||    
T  16181760 ttcttaagaaaatgattagttaaattgatttcaatggtaaaatta 16181804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 26285477 - 26285529
Alignment:
Q  162 cttaagaaaataattagtttagttgattttaatggtaaaattagtattattta 214  Q
    ||||| ||||| ||||||| | |||||||||| |||||||||||||| |||||    
T  26285477 cttaataaaatgattagttgacttgattttaacggtaaaattagtatcattta 26285529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 37184074 - 37184138
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaata 222  Q
    |||| |||| ||||| |||| || ||||||||| ||||||||||||| ||| ||||||| |||||    
T  37184074 gatttttaaaaaaatgattaattgagttgatttcaatggtaaaattaatatcatttactaaaata 37184138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 40900011 - 40899955
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| |||| ||||||||||| ||||||| ||| |||||||| |||| ||||    
T  40900011 gttgattttgatggcaaaattagtatcatttactaaaacacccttattaattgtagt 40899955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 41478800 - 41478745
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcatt 302  Q
    ||||||||||||||||| ||||||  ||| ||||||||||||  ||||||||||||    
T  41478800 tgaaattcaataaataaaggtataatagtagaaaaaataataataaatgttgcatt 41478745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 41480166 - 41480111
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcatt 302  Q
    ||||||||||||||||| ||||||  |||| |||||||||||  ||||||||||||    
T  41480166 tgaaattcaataaataaaggtataatagtgaaaaaaataataataaatgttgcatt 41480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 24983445 - 24983526
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||||||| ||||||||| ||||||||||||||| | ||||||| ||| |||||||| |||| ||||    
T  24983445 gattcttaaggaaatgattagttgagttgatttcaatggtaaaattagtgtcatttactaaaacacccttattaattgtagt 24983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 4581977 - 4582041
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaata 222  Q
    |||||||| |||||||||||| |  |||||||||||||||||||||| ||| ||||||| |||||    
T  4581977 gattcttatgaaaataattagctgtgttgattttaatggtaaaattaatatcatttactaaaata 4582041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 7072273 - 7072213
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatac 223  Q
    ||||||||||||||| ||  |||||||||||||||||||||||| | ||||||| ||||||    
T  7072273 ttaagaaaataattaattgtgttgattttaatggtaaaattagtgtcatttactgaaatac 7072213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 32440666 - 32440717
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||| ||||    
T  32440666 gttgattttgatggtaaaattagtattatttactaaaacacccttattaatt 32440717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 12307691 - 12307776
Alignment:
Q  246 gagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 332  Q
    ||||||||||||||||||||   ||||| ||| ||||||||||| |||||||| |||| |||  ||| |||||||||||||| ||||    
T  12307691 gagtgaaattcaataaataagaatatattagttgaaaaaataat-aaatgttgtattaatattttaaagtgacaattattttgagac 12307776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 15058132 - 15058051
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaaga 331  Q
    ||||||||||||||||| ||||||  |||  |||||||||| |||||||||||  ||||  ||| ||||||||||||||||||    
T  15058132 tgaaattcaataaataagggtataatagtacaaaaaataat-aaatgttgcatcggtattataaagtgacaattattttaaga 15058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 3291792 - 3291845
Alignment:
Q  186 gattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||||| |||||||||||||||| ||||||| |||| |||| ||||    
T  3291792 gattttaatggtaatattagtattatttactaaaatacctttattaattgtagt 3291845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 6699046 - 6698973
Alignment:
Q  125 tctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggta 198  Q
    |||||| |||||  || ||||||||||||||||| || ||||||||||||||| |   ||||||||||||||||    
T  6699046 tctcaaattaataatctcatttgaattttacatggttattaagaaaataattaatagtgttgattttaatggta 6698973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 15058235 - 15058154
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| || |||| |||| |||||||||||||||   ||||||| |||||||||||| |||| ||||    
T  15058235 gattattaagaaaatgattaattaagttaatttcaatggtaaaattagtggcatttactaaaatacccttattaattgtagt 15058154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 1063604 - 1063664
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatac 223  Q
    |||||||||| |||| ||  |||||||| |||| |||||||||||||||||||| ||||||    
T  1063604 ttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatac 1063664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 11655947 - 11656023
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  ||||||||| |||||||||||||| | ||||||| ||| |||||||| |||| ||||    
T  11655947 ttaagaaaatgattaattgtgttgattttgatggtaaaattagtgtcatttactaaaacacccttattaattgtagt 11656023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 30717013 - 30716937
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| |||| |||| |||  |||| ||| |||||||||||||||| ||||||||||| |||||||| |||| ||||    
T  30717013 ttaaggaaatgattaattttattgactttgatggtaaaattagtatcatttacttaaacacccttattaattgtagt 30716937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 2423751 - 2423692
Alignment:
Q  143 atttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||| |||||||||||||| || ||||||| |||| | | ||||||||||||||||||||    
T  2423751 atttaaattttacatgattattcagaaaatgattaatattgttgattttaatggtaaaat 2423692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 7920254 - 7920178
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||||||||||  ||||  ||||||||  ||||||||||||  ||| |||| |||| |||||||||    
T  7920254 tgaaattcaataaataatggtataatagtg--aaaaataaataaatgttgcattgatattctaaagtgataattatttt 7920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 20526460 - 20526531
Alignment:
Q  137 tgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtat 208  Q
    |||||||||||| || |||||  |||| |||||||| |||| ||| |||||||||||| ||||||| |||||    
T  20526460 tgtcacatttgagttgtacattgttctcaagaaaatgattaatttggttgattttaatagtaaaataagtat 20526531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 16464492 - 16464446
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaattagtattattta 214  Q
    ||||| |||| ||| |||||||||||||||||||||| |||||||||    
T  16464492 aaaattattactttggttgattttaatggtaaaattaatattattta 16464446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 23397617 - 23397675
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||||||| |||||| |||| || ||||||||| ||||||||||||||| | |||||||    
T  23397617 gattcttatgaaaattattacttgagttgatttaaatggtaaaattagtgtaatttact 23397675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 34300006 - 34299926
Alignment:
Q  253 attcaataaataatggtatatgagtggaaa--aaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 332  Q
    ||||||||||||| | ||||| ||||||||  |||||||||| ||||| |||  ||| |||| |||||||||||||||||||    
T  34300006 attcaataaataaggatatattagtggaaagaaaataataaa-tgttgtattgatattctaaagtgacaattattttaagac 34299926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 34300087 - 34300037
Alignment:
Q  184 ttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    ||||||| |||| |||||||||||||||||||| ||||| |||||| ||||    
T  34300087 ttgatttgaatgataaaattagtattatttactaaaatatccttattaatt 34300037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 1781920 - 1781839
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  |||||| | ||||||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  1781920 gattgttaagaaaatgattaattatgttgatctcaatggtaaaattagtagcatttactaaaacacccttattaattgtagt 1781839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 6834365 - 6834446
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||||||||||||| ||  ||||||||| || || |||||| ||| ||||||| ||| ||| |||| |||||||||    
T  6834365 gattattaagaaaataattaattgtgttgattttgatagtcaaattaatatcatttactaaaacacctttattaattatagt 6834446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 13087648 - 13087567
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||| | |||| ||  |||||||| ||||||||||||| ||| ||||||| ||| | |||||| |||||||||    
T  13087648 gattattaagaaagtgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacatccttattaattatagt 13087567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 29363321 - 29363241
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||||||||||||||||  |||||  | ||||||||||||||  ||||| |||||| |||| || | ||||||||||||||    
T  29363321 tgaaattcaataaataagagtataataatggaaaaaataataataaatgctgcattggtattctgaagtgacaattatttt 29363241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 6802044 - 6801968
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  ||||||||| |||||||||||| ||| ||||||| |||  ||||||| |||| ||||    
T  6802044 ttaagaaaatgattaattatgttgattttgatggtaaaattaatatcatttactaaaacgcccttattaattgtagt 6801968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 11143608 - 11143664
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| ||| |||||||||||| ||||||| ||  |||||||| |||||||||    
T  11143608 gttgattttgatgataaaattagtatcatttactaaatcacccttattaattatagt 11143664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 13909517 - 13909461
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| |||||||||||||||   ||||||| |||||||||||| |||| ||||    
T  13909517 gttgatttcaatggtaaaattagtgacatttactaaaatacccttattaattgtagt 13909461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 21010290 - 21010214
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  ||| ||||| |||| ||||||||||| ||||||| ||| |||||||| |||| ||||    
T  21010290 ttaagaaaatgattaattgtgttaattttgatggaaaaattagtatcatttactaaaacacccttataaattgtagt 21010214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 24983547 - 24983624
Alignment:
Q  248 gtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||||||||||||||||| ||||||| |||||| |||| |||  ||||| || || |||  |||| ||||||||||||||    
T  24983547 gtgaaattcaataaataagggtatattagtggataaaaaaat--aatgtggcgttggtaatctaaagtgacaattatttt 24983624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 27367523 - 27367602
Alignment:
Q  248 gtgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatt 325  Q
    |||||||||||||||||| ||||||  ||||||||||| | ||  ||||||| |||| ||||  ||| ||||||||||||    
T  27367523 gtgaaattcaataaataagggtataatagtggaaaaaaaactaataaatgttacattggtattgtaaagtgacaattatt 27367602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 27457870 - 27457949
Alignment:
Q  248 gtgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatt 325  Q
    |||||||||||||||||| ||||||  ||||||||||| | ||  ||||||| |||| ||||  ||| ||||||||||||    
T  27457870 gtgaaattcaataaataagggtataatagtggaaaaaaaactaataaatgttacattggtattgtaaagtgacaattatt 27457949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 31894204 - 31894264
Alignment:
Q  156 atgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||||| |||||||||| |||| ||  |||||||| ||||||||||||||||  |||||||    
T  31894204 atgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttact 31894264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 331
Target Start/End: Original strand, 46396911 - 46397059
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaataatggtatatgagtggaaa 282  Q
    |||||||| ||||||||||||| ||  ||||||| ||| || ||||| |||| |||| |||| |  | ||||||| ||||||| ||||||  | ||||||    
T  46396911 gttgatttcaatggtaaaattaatagcatttactaaaacactcttattaattgtagttaagttggataaaattcattaaataagggtataataatggaaa 46397010  T
Q  283 aaa-taataaaatgttgcattagtatcctaaggtgacaattattttaaga 331  Q
    ||| |||| |||||||| ||| ||||| ||| ||||||||||||||||||    
T  46397011 aaactaat-aaatgttgtattcgtatcgtaaagtgacaattattttaaga 46397059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 42517636 - 42517722
Alignment:
Q  153 tacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||| |||||||||| |||| ||  |||||||| |||||||||||||  || ||||||| |||||||||||| |||||||||    
T  42517636 tacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattaagatcatttactaaaatacccttattaattatagt 42517722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 35311329 - 35311409
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||||||||||||||  |||||||||||| ||||  ||| ||||||||||||||    
T  35311329 tgaaattcaataaataaaggtataatattggaaaaaataataataaatgttgcattggtattgtaaagtgacaattatttt 35311409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 5841455 - 5841511
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  5841455 gttgattttaatggtaaaattaatatcatttactaaaatacccttattaattgtagt 5841511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 47773027 - 47773103
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| ||||||||| ||  ||||||||| |||||||||||||||| ||||||| ||| |||||||| |||| ||||    
T  47773027 ttaaggaaataattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagt 47773103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 17512352 - 17512423
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| ||||||| |||||||||||| |||||||||| ||| ||||||| ||||||| |||| |||| ||||    
T  17512352 aaaatgattagttgagttgattttaaaggtaaaattaatataatttactaaaataccattattaattgtagt 17512423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 327
Target Start/End: Original strand, 28500919 - 28501069
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt----atagtcaagtagagtgaaattcaataaataatggtatatgagtg 278  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||||||| ||||     |||| ||||    ||||||||||||||||| ||||||  | ||    
T  28500919 gttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgcagttagttaagtttgatgaaattcaataaataagggtataataatg 28501018  T
Q  279 gaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    | ||||| ||||  |||||||| ||| |||| |||| | ||||||||||||    
T  28501019 ggaaaaaaaataataaatgttgtattggtattctaaagagacaattatttt 28501069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 11907602 - 11907683
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  ||||||||| |||||||||||||||| ||||||| ||| |||||||| |||| ||||    
T  11907602 gattattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagt 11907683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 38405105 - 38405186
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  38405105 gattattaaggaaatgattaattctgttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagt 38405186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 43237258 - 43237174
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattattttaaga 331  Q
    |||||||||||||||||  |||||  |||| |||||||||||  |||||||||||||||| | ||| |||||| | |||||||||    
T  43237258 tgaaattcaataaataagtgtataatagtgaaaaaaataataataaatgttgcattagtaccgtaaagtgacactcattttaaga 43237174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 49428345 - 49428426
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  49428345 gattattaaggaaatgattatttgtgttgatttcaatggtaaaattaatataatttactaaaatacccttattaattgtagt 49428426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 17114533 - 17114477
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||||||| |||| ||||    
T  17114533 gttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagt 17114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 17237296 - 17237380
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||| ||||||||||||||| ||  |||||||  ||||||||||||||||  ||||||| ||| | |||||| |||| ||||    
T  17237296 catgattattaagaaaataattaattgtgttgattgcaatggtaaaattagtaacatttactaaaacaaccttattaattgtagt 17237380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 34360668 - 34360592
Alignment:
Q  251 aaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||| ||||||  ||||||||||| || ||||||||  ||| ||||  ||| ||||||||||||||    
T  34360668 aaattcaataaataagggtataatagtggaaaaaaaaaaaaaatgttaaattggtattgtaaagtgacaattatttt 34360592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 36985879 - 36985823
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||||||| ||||||| |||||||| ||| |||| ||||    
T  36985879 gttgatttcaatggtaaaattagtatcatttactaaaatacccgtattaattgtagt 36985823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 38502490 - 38502566
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| ||||||||| ||  ||||||||| |||||||||||||||| ||||| | ||||||  |||| |||||||||    
T  38502490 ttaaggaaataattaattgtgttgattttgatggtaaaattagtatcatttattaaaatacttttattaattatagt 38502566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 42616996 - 42617087
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||| |||| || |||||||||||||||||  |||||  | ||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  42616996 tagttaagtcgaatgaaattcaataaataagtgtataataatggaaaataataataaa-tgttgcatttgtattctaaagtgacaattatttt 42617087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 49176042 - 49176124
Alignment:
Q  251 aaattcaataaataatggtatatgagtgg--aaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 332  Q
    ||||||||||||||| ||||||  |||||  ||||||||||||  ||||||||| |||| |||| |||||||||||||| ||||    
T  49176042 aaattcaataaataagggtataatagtgggaaaaaaataataat-tgttgcattggtattctaaagtgacaattattttgagac 49176124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 3689654 - 3689599
Alignment:
Q  184 ttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| |||||||||||||||| ||||||| ||| || ||||| |||||||||    
T  3689654 ttgattttgatggtaaaattagtatcatttactaaaacactcttattaattatagt 3689599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 16821437 - 16821518
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataa--aatgttgcattagtatcctaaggtgacaattattttaa 329  Q
    ||||||||||||||||| ||||||  |||| ||||| ||||||  |||| |||||| |||| |||| ||||||||||||||||    
T  16821437 tgaaattcaataaataagggtataatagtgcaaaaa-taataataaatgctgcattggtattctaaagtgacaattattttaa 16821518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 35380331 - 35380394
Alignment:
Q  153 tacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||| |||| |||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  35380331 tacacgattattaagaaaatgattaattatgttgattttaatggtaaaattagtagcatttact 35380394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 39157862 - 39157957
Alignment:
Q  144 tttgaattttacatgattcttaagaaaataattagtttagttga-ttttaatggtaaaattagtattatttacttaaatacccttatgaattatag 238  Q
    ||||| ||||||| |||| |||||||||| |||||||  ||| | |||| ||||||||||| || | ||||||| |||||| ||||| ||||||||    
T  39157862 tttgagttttacacgattattaagaaaatgattagttgtgtttaattttgatggtaaaatttgtttcatttactaaaatacacttattaattatag 39157957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 49747069 - 49746998
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| ||  |||||||| |||| ||||||||||| |||||||| ||||||| | || |||||||||    
T  49747069 aaaataattaattgtgttgatttcaatgataaaattagtagtatttactaaaataccttcattaattatagt 49746998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 2066907 - 2066826
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  ||||||||| |||||||| ||||||||||||| | ||| |||||||| |||| ||||    
T  2066907 gattattaaggaaatgattaattgtgttgattttgatggtaaagttagtattatttattaaaacacccttattaattttagt 2066826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 32469958 - 32470007
Alignment:
Q  165 aagaaaataattagtttagttgattttaatggtaaaattagtattattta 214  Q
    |||||||| |||| ||  |||||||||||||||||||||||||| |||||    
T  32469958 aagaaaatgattaattgtgttgattttaatggtaaaattagtatcattta 32470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 33790734 - 33790815
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  ||||||||| |||||||||||||| | |||| || ||| |||||||| |||| ||||    
T  33790734 gattattaagaaaatgattaattgtgttgattttgatggtaaaattagtttcatttgctaaaacacccttattaattgtagt 33790815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 38405208 - 38405287
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa--taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | |||||||||  |||| ||||||||||||  ||| |||| ||||||||||||||    
T  38405208 tgaaattcaataaataaaggtataataatggaaaaaaagtaat-aaatgttgcattgctattctaaagtgacaattatttt 38405287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 49746976 - 49746897
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataa--aatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | |||||||| ||||||  ||||||||||| ||||  ||| ||||||||||||||    
T  49746976 tgaaattcaataaataagggtataataatggaaaaa-taataataaatgttgcattggtattgtaaagtgacaattatttt 49746897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 52859802 - 52859883
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  ||||||||| |||||||||||||||| ||||||| ||| | |||||| |||| ||||    
T  52859802 gattattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacatccttattaattgtagt 52859883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 52859930 - 52859978
Alignment:
Q  278 ggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  52859930 ggaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 52859978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 53412226 - 53412145
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||  |||| |||  ||||||| ||||||||||||||||| ||||||| |||||   |||| |||||||||    
T  53412226 gatttttaagaaaacgattaattttattgatttcaatggtaaaattagtatcatttactaaaatatttttattaattatagt 53412145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 5618660 - 5618584
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    |||| |||| ||||| || ||||  ||||||||||||||||||||||  |||||||| | ||||| |||||| ||||    
T  5618660 gattattaaaaaaatgatgagttgtgttgattttaatggtaaaattaaaattatttattaaaatatccttattaatt 5618584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 16821359 - 16821415
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| |||| |||||||||||| |||||||  |||| |||||| |||||||||    
T  16821359 gttgatttcaatgataaaattagtatcatttactataatatccttattaattatagt 16821415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 25734660 - 25734700
Alignment:
Q  174 attagtttagttgattttaatggtaaaattagtattattta 214  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  25734660 attagtttggatgattttaatcgtaaaattagtattattta 25734700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 49175934 - 49176018
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||| |||||||||| |||| ||  |  ||||| |||| |||||||||||| ||||||| ||||| |||||| |||| ||||    
T  49175934 catgatttttaagaaaatgattaattgtggagatttcaatgataaaattagtatcatttactaaaataaccttattaattgtagt 49176018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 24569097 - 24569178
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  |||||||| ||||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  24569097 gattattaagaaaatgattaattgtgttgatttcaatggtaaaattaatattatttactaaaatacccttattaattgtagt 24569178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 30190682 - 30190738
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  30190682 gttgatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagt 30190738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 10366749 - 10366827
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtgg-aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  | ||| ||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  10366749 tgaaattcaataaataagggtataataatgggaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 10366827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 37772958 - 37773044
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagtca 241  Q
    ||||||| ||||| |||| |||| ||   ||||||  ||||||||||||| ||| ||||||| |||||||||||| |||||||||||    
T  37772958 catgattattaaggaaatgattaattgtattgattacaatggtaaaattaatatcatttactaaaatacccttattaattatagtca 37773044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 39043844 - 39043932
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattt 326  Q
    |||| |||| || ||||||||||||||||| ||||||  | || ||||||||||||| ||||||||| |||| |||| |||||||||||||    
T  39043844 tagttaagttgaatgaaattcaataaataagggtataataatg-aaaaaataataaa-tgttgcattggtattctaaagtgacaattattt 39043932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 52206806 - 52206908
Alignment:
Q  120 ctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaa 219  Q
    |||| ||||| |||||| ||||  ||| |||| | ||| ||||||||| |||| ||||||| | ||||||| ||||||||||||| ||| ||||||| ||    
T  52206806 ctccgtctcattttaatagtcatttttcaattgtgcattattcttaaggaaatgattagttaaattgatttcaatggtaaaattaatatcatttactaaa 52206905  T
Q  220 ata 222  Q
    |||    
T  52206906 ata 52206908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 34750589 - 34750533
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||||||||||||||||| ||||||| ||| | |||||| |||| ||||    
T  34750589 gttgattttaatggtaaaattagtatcatttactaaaacatccttattaattgtagt 34750533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 34957596 - 34957540
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| ||| ||||||||||| |||| ||||||||||||| |||||| |||||||||    
T  34957596 gttgaatttgatggtaaaatttgtataatttacttaaatatccttattaattatagt 34957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 36476697 - 36476621
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||||||||  ||  |||||||  ||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  36476697 ttaagaaaataattgattgtgttgattgcaatggtaaaattaatatcatttactaaaatacccttattaattgtagt 36476621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 8679154 - 8679197
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaa 292  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||    
T  8679154 tgaaattcaataaataagggtataatagtggaaaaaataataaa 8679197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 19823026 - 19822948
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcct-aaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||| | || |||||||||| ||||| |||||| |||| || || ||||||||||||||    
T  19823026 tgaaattcaataaataagggtatattaatgaaaaaaataat-aaatgctgcattggtattctaaaagtgacaattatttt 19822948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 31158611 - 31158654
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaa 292  Q
    ||||||||||||||||||||||||  |||| |||||||||||||    
T  31158611 tgaaattcaataaataatggtataatagtgaaaaaaataataaa 31158654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 36460516 - 36460594
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaa-aaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  |||||||| ||||||| |||| |||||||  |||| ||| ||||||||||||||    
T  36460516 tgaaattcaataaataagggtataatagtggaaacaaataat-aaatattgcattgatatcgtaaagtgacaattatttt 36460594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 38795359 - 38795276
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 332  Q
    ||||||| |||||| || || |||  ||||||||| | |||||||| ||||||| |||| |||| |||||||||||||| ||||    
T  38795359 tgaaatttaataaaaaagggcataatagtggaaaataaaataaaatattgcattggtattctaaagtgacaattattttgagac 38795276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 44301655 - 44301604
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    |||||||| |||| |||||||||||| ||||||| |||||||||||| ||||    
T  44301655 gttgatttcaatgataaaattagtatcatttactaaaatacccttatcaatt 44301604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 10366639 - 10366717
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattat 236  Q
    |||| |||||||||| |||| ||  |||||||| ||||||||||||||||| ||||| | ||| || ||||| ||||||    
T  10366639 gattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtatcatttattaaaacactcttattaattat 10366717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 8679051 - 8679132
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||||||  ||||||| ||| | |||||| |||||||||    
T  8679051 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaagatccttattaattatagt 8679132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 37312068 - 37311987
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  37312068 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaaaacccttattaattgtagt 37311987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 37695663 - 37695744
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  37695663 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagt 37695744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 43253860 - 43253941
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  43253860 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagt 43253941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 43253963 - 43254042
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa--taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||| ||||||| ||||||  |||||||||||  |||| |||||||||||| ||||  ||| ||||||||||||||    
T  43253963 tgaaattcattaaataagggtataatagtggaaaaaaactaat-aaatgttgcattggtattgtaaagtgacaattatttt 43254042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 12736569 - 12736645
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    |||| ||||| |||| |||| ||  ||||||| ||||| |||||||||||| |||||||  ||||||||||| ||||    
T  12736569 gatttttaaggaaatgattaattgtgttgattctaatgataaaattagtatcatttactacaatacccttattaatt 12736645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 38374670 - 38374758
Alignment:
Q  114 tactccctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||||| ||||||||||  || | || |||| ||||||  |||| || |||||| ||||||| | ||||||||||||| ||||||    
T  38374670 tactccctccgtctcaatttatgtgactcagttgagttttactcgattatttagaaaacaattagtattgttgattttaatgttaaaat 38374758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 53560310 - 53560254
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| ||||||||||| |||| ||||||| ||| |||||||| || ||||||    
T  53560310 gttgattttgatggtaaaatttgtatcatttactaaaacacccttattaaatatagt 53560254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 15809982 - 15810038
Alignment:
Q  160 ttcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||    
T  15809982 ttcttaagaaaatgattagttcagttgattttaatggtagaattaatattatttact 15810038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 7703154 - 7703233
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattata 237  Q
    |||| ||||| ||||||||| ||  |||||||| ||||||||||||| ||| ||||||| |||||||||||| |||||||    
T  7703154 gattattaaggaaataattaattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattata 7703233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 13335231 - 13335154
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||| | ||||||  | |||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  13335231 tgaaattcaataaatcagggtataataatggaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 13335154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 17719283 - 17719337
Alignment:
Q  185 tgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||    
T  17719283 tgattttaatggtaaagttagtattatttactaaaatatccttattaattatagt 17719337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 4924070 - 4924146
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||||||  ||  |||||||||||||||||||||||||||||| ||||| | |||| |||| ||||    
T  4924070 ttaagaaaattattagttgtgtatattttaatggtaaaattagtattatttactaaaatatctttattaattgtagt 4924146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 44648540 - 44648588
Alignment:
Q  168 aaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  44648540 aaaatgattagtttagttgatttcaatggtaaaattagtatcatttact 44648588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 14855035 - 14855117
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattattttaa 329  Q
    |||||||||||||| |||||||||  ||||||||||| ||||  |||| |||||||| |||  ||| ||||||||||||||||    
T  14855035 tgaaattcaataaagaatggtataatagtggaaaaaaaaataataaatattgcattaatattgtaaagtgacaattattttaa 14855117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 10179945 - 10180026
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| | |||||   ||||||| ||||||||||||||||| ||||||| |||||| ||||| |||| ||||    
T  10179945 gattattaagaaaatgagtagttgtattgatttcaatggtaaaattagtataatttactaaaatacacttattaattgtagt 10180026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 31271139 - 31271058
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||  ||  |||||||||||||||||||||| ||| || |||| |||||| ||||| |||||||||    
T  31271139 gattattaagaaaatgattgattgtgttgattttaatggtaaaattaatatcatatactaaaatactcttattaattatagt 31271058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 39482733 - 39482652
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  |||||||| || |||||||||||||  ||||||| ||| |||||||| |||||||||    
T  39482733 gattattaagaaaatgattaattgtgttgatttcaagggtaaaattagtagaatttactaaaacacccttattaattatagt 39482652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 42972506 - 42972587
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||   ||||||| ||||||||||||| |||  |||||| |||||||||||| |||||||||    
T  42972506 gattattaagaaaatgattaattgttttgatttcaatggtaaaattaatatcgtttactaaaatacccttattaattatagt 42972587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 13831615 - 13831659
Alignment:
Q  180 ttagttgattttaatggtaaaattagtattatttacttaaatacc 224  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||    
T  13831615 ttagttgattttaatggtaaaattaatattatttattaaaatacc 13831659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 27966524 - 27966464
Alignment:
Q  142 catttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||  |||||||||||  |||||||||||||| || |||| ||||||||||||||||    
T  27966524 catttgagatttacatgattaataagaaaataattaattgagttaattttaatggtaaaat 27966464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 27976935 - 27976875
Alignment:
Q  142 catttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||  |||||||||||  |||||||||||||| || |||| ||||||||||||||||    
T  27976935 catttgagatttacatgattaataagaaaataattaattgagttaattttaatggtaaaat 27976875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 28034204 - 28034144
Alignment:
Q  142 catttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||  |||||||||||  |||||||||||||| || |||| ||||||||||||||||    
T  28034204 catttgagatttacatgattaataagaaaataattaattgagttaattttaatggtaaaat 28034144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 34393977 - 34394033
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| |||||||||||||||| ||||||| ||| ||| |||| |||||||||    
T  34393977 gttgattttgatggtaaaattagtataatttactaaaacacctttattaattatagt 34394033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 40109732 - 40109650
Alignment:
Q  244 tagagtgaaattcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||||||||   ||||| |||||||||| ||||| ||||||||||||| ||| ||||  |||||||||||||    
T  40109732 tagagtgaaattcaataaataagaatatattagtggaaaaatataat-aaatgttgcatta-tattctaaaatgacaattatttt 40109650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 31082711 - 31082656
Alignment:
Q  184 ttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||| ||||||||||  |||||||| ||| |||||||| |||||||||    
T  31082711 ttgattttaatgataaaattagtggtatttactaaaacacccttattaattatagt 31082656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 17719359 - 17719436
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattattt 326  Q
    ||||||| ||||||||| ||||||  | |||||||| |||||||| ||||||||| |||| |||| |||||||||||||    
T  17719359 tgaaatttaataaataaaggtataataatggaaaaagataataaa-tgttgcattggtattctaaagtgacaattattt 17719436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 36006988 - 36007073
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaa--tgttgcattagtatcctaaggtgacaattattttaagac 332  Q
    |||||||||||||||||  | |||  |||| ||||||||| || |  |||||||||||||| |||| |||||||||||||| ||||    
T  36006988 tgaaattcaataaataagagcataatagtgaaaaaaataaaaataattgttgcattagtattctaaagtgacaattattttgagac 36007073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 396742 - 396794
Alignment:
Q  281 aaaaataataa--aatgttgcattagtatcctaaggtgacaattattttaaga 331  Q
    |||||||||||  ||||||||||| |||| |||| ||||||||||||||||||    
T  396742 aaaaataataataaatgttgcattggtattctaaagtgacaattattttaaga 396794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 1875590 - 1875671
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  1875590 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagt 1875671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 1875840 - 1875916
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatt 325  Q
    ||||||| ||||||||| ||||||  ||||||||||| |||| |||||||||||| ||||  ||| ||||||||||||    
T  1875840 tgaaatttaataaataagggtatactagtggaaaaaagtaat-aaatgttgcattggtattgtaaagtgacaattatt 1875916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 9300111 - 9300192
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||  ||  |||||||||||||||||||||| ||  ||||||| ||| |||||||| |||| ||||    
T  9300111 gattattaagaaaatgattgtttgtgttgattttaatggtaaaattaatagcatttactaaaacacccttattaattttagt 9300192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 36006897 - 36006966
Alignment:
Q  170 aataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||  ||||||||||||| |||||||| ||||||| ||| ||||| || ||| |||| ||||    
T  36006897 aataattagttgtgttgattttaatgataaaattaatattattgactaaaatatccctattaattgtagt 36006966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 45425661 - 45425710
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaatta 204  Q
    ||||||| |||||||||| |||| ||  ||||||||||||||||||||||    
T  45425661 catgattattaagaaaatgattaattgtgttgattttaatggtaaaatta 45425710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 4428354 - 4428414
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatac 223  Q
    |||||||||| |||| ||  ||||||||||||| |||||||| ||| ||||||| ||||||    
T  4428354 ttaagaaaatgattatttgtgttgattttaatgataaaattattatcatttactaaaatac 4428414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 7672364 - 7672420
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||||| |||||||  || ||||||||| ||||| |||||| |||||||||    
T  7672364 gttgattttaatagtaaaatgtgttttatttactaaaatatccttattaattatagt 7672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 27871151 - 27871091
Alignment:
Q  142 catttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||  |||||||||||  |||||||||||||| || |||| |||||||| |||||||    
T  27871151 catttgagatttacatgattaataagaaaataattaattgagttaattttaatagtaaaat 27871091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 27883311 - 27883251
Alignment:
Q  142 catttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||  |||||||||||   ||||||||||||| || |||| ||||||||||||||||    
T  27883311 catttgagatttacatgattaacaagaaaataattaattgagttaattttaatggtaaaat 27883251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 28023490 - 28023430
Alignment:
Q  142 catttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||||||  |||||||||||   ||||||||||||| || |||| ||||||||||||||||    
T  28023490 catttgagatttacatgattaacaagaaaataattaattgagttaattttaatggtaaaat 28023430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 44761517 - 44761573
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||||||  ||||||| ||| |||||||| |||| ||||    
T  44761517 gttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagt 44761573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 34119 - 34196
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||  |||  ||| ||||||||||||||    
T  34119 tgaaattcaataaataatggtataatagtggaaaaaataat-aaatgatgcattgatattgtaaagtgacaattatttt 34196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 1817 - 1739
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagtca 241  Q
    |||||||||| |||| ||  ||||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||    
T  1817 ttaagaaaatgattaattatgttgattttgatggtaaaattagtatcatttacttaaacacccgtattaattgtagtca 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 6160459 - 6160540
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  |||||||| |||| |||||||||||||||||||| |||||| ||||| |||| ||||    
T  6160459 gatttttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatactcttattaattgtagt 6160540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 23168993 - 23169074
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||||||||||||| ||  |||||||| ||||||||||||||||  ||||||| ||| | |||||| |||||||||    
T  23168993 gattattaagaaaataattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacatccttattaattatagt 23169074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 24991756 - 24991835
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtgg--aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  |||||  ||||||||||||| ||||||||||||||  ||| ||||||||||||||    
T  24991756 tgaaattcaataaataaaggtataatagtgggaaaaaaataataaa-tgttgcattagtattgtaaagtgacaattatttt 24991835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 12039094 - 12039019
Alignment:
Q  252 aattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||||||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||  ||| ||||||||||||||    
T  12039094 aattcaataaataagggtataatagtggaaaataataataaa-tgttgcattagtattgtaaagtgacaattatttt 12039019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 45331454 - 45331378
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||||||||| ||  ||||||||| |||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  45331454 ttaagaaaataattaattatgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagt 45331378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 31042918 - 31042839
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    ||||||| ||||| |||| |||| ||  |||||||| ||||||||||||||||| |||||||  ||||||||||| ||||    
T  31042918 catgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactgtaatacccttattaatt 31042839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 49223992 - 49224067
Alignment:
Q  164 taagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| |||| ||  ||||||||| |||||||||||||||| ||||||| ||| |||||||| |||| ||||    
T  49223992 taagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagt 49224067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 4659791 - 4659714
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| | ||||  |||||||||||||| | ||||||||||| ||||  ||| ||||||||||||||    
T  4659791 tgaaattcaataaataaggatataatagtggaaaaaataa-ataatgttgcattggtattgtaaagtgacaattatttt 4659714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 11642304 - 11642239
Alignment:
Q  137 tgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaat 202  Q
    |||| ||||||| ||||||||| || |||||||||| |||| | | ||||||||||||||||||||    
T  11642304 tgtctcatttgagttttacatggttattaagaaaatgattaatattgttgattttaatggtaaaat 11642239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 917117 - 917061
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  917117 gttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagt 917061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 7351729 - 7351673
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||| |||| ||||    
T  7351729 gttgattttaatgataaaattaatattatttactaaaataaccttattaattctagt 7351673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 11449900 - 11449822
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaa 329  Q
    ||||||||||||||||| ||||||  | |||||| || || |||||||||||||||||| |||| ||||||| ||||||||    
T  11449900 tgaaattcaataaataa-ggtataataatggaaagaaaaa-aaaatgttgcattagtattctaaagtgacaactattttaa 11449822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 35538756 - 35538653
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagtcaag-tagagtgaaattcaataa 261  Q
    |||||||||| |||| ||  |||||||| |||| ||||||   ||||||||||| ||||| |||||| |||| |||| ||| |||| |||||||||||||    
T  35538756 ttaagaaaattattaattgtgttgatttcaatgataaaatggatattatttactaaaatatccttattaattgtagttaagttaga-tgaaattcaataa 35538658  T
Q  262 ataat 266  Q
    |||||    
T  35538657 ataat 35538653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 36702014 - 36701958
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||||||| ||||||| |||| ||||||| |||| ||||    
T  36702014 gttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagt 36701958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 36718118 - 36718062
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||||||| ||||||| |||| ||||||| |||| ||||    
T  36718118 gttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagt 36718062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 40144852 - 40144928
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  ||||||||| |||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  40144852 ttaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagt 40144928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 41121850 - 41121906
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| ||||||||||||| || ||||||| |||||||||||| |||| ||||    
T  41121850 gttgattttgatggtaaaattagcataatttactaaaatacccttattaattgtagt 41121906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 6785271 - 6785193
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  ||||||||||| ||||||| ||||||||  ||||  ||| ||||||||||||||    
T  6785271 tgaaattcaataaataagggtataatagtggaaaaaaataataaa-tgttgcataggtattgtaaagtgacaattatttt 6785193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 15444460 - 15444539
Alignment:
Q  137 tgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||||||||||| ||||| ||| || ||||| |||| |||| |   ||||||||||||||||||||  ||||||||||||    
T  15444460 tgtcacatttgagttttatatggttattaaggaaatgattaatagtgttgattttaatggtaaaatatgtattatttact 15444539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 35682897 - 35682940
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaa 292  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||    
T  35682897 tgaaattcaataaataagggtataatagtggaaaaaataataaa 35682940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 39864126 - 39864048
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  ||||||||||| ||||||| |||||||||  |||  ||| ||||||||||||||    
T  39864126 tgaaattcaataaataagggtataatagtggaaaaaaataataaa-tgttgcattgatattgtaaagtgacaattatttt 39864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 49224121 - 49224167
Alignment:
Q  280 aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  49224121 aaaaaataataaa-tgttgcattagtattctaaagtgacaattatttt 49224167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 10495956 - 10495898
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||| |||| ||||| |||| ||| ||||||||| |||||||||||||||| |||||||    
T  10495956 gattattaaaaaaattattaattttgttgattttgatggtaaaattagtatcatttact 10495898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 16395047 - 16395113
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacc 224  Q
    |||| |||||||||| |||| ||  ||||||||| || ||||||||||||| ||||||| |||||||    
T  16395047 gattattaagaaaatgattaattgtgttgattttgatagtaaaattagtatcatttactaaaatacc 16395113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 27721545 - 27721468
Alignment:
Q  251 aaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaa 329  Q
    |||||||||||||||  |||||  ||||||||||||||| ||||| |||||| ||||  ||| ||| ||||||||||||    
T  27721545 aaattcaataaataaaagtataatagtggaaaaaataat-aaatgatgcatttgtattgtaaagtggcaattattttaa 27721468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 28092605 - 28092571
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttactt 217  Q
    |||||||||||||||||||||| ||||||||||||    
T  28092605 gttgattttaatggtaaaattaatattatttactt 28092571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 43614490 - 43614448
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaataccc 225  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||    
T  43614490 gttgattttaatggtaaaattagtatcattgactaaaataccc 43614448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 44122308 - 44122203
Alignment:
Q  183 gttgattttaatggtaaaattagtat--tatttacttaaatacccttatgaattatagtca-agtagagtgaaattcaataaataatggtatatgagtgg 279  Q
    |||||||||||||| |||||  ||||  |||||||| ||| |||||||| ||||||||| | ||  || |||||| |||||||||| ||||| | |||||    
T  44122308 gttgattttaatggaaaaatatgtatcatatttactaaaacacccttattaattatagttatagatgattgaaatgcaataaataagggtatgttagtgg 44122209  T
Q  280 aaaaaa 285  Q
    ||||||    
T  44122208 aaaaaa 44122203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 7759244 - 7759152
Alignment:
Q  235 atagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||| |||| || ||||||||||||||||| ||||||  | ||||||||| ||||||| || ||||||| |||  ||| ||||||||||||||    
T  7759244 atagttaagttgaatgaaattcaataaataagggtataataatggaaaaaaataataaa-tgatgcattattattgtaaagtgacaattatttt 7759152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 22181449 - 22181384
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaataccctta 228  Q
    ||||| |||| ||||||| |||| |||| ||||||||||||| ||| ||||||| ||| |||||||    
T  22181449 ttaaggaaatgattagttgagttcatttcaatggtaaaattaatatcatttactaaaacaccctta 22181384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 26093512 - 26093431
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| |||||||||| |||| ||  |||||||| ||||||||||||| ||| ||||| | ||||| |||||| |||| ||||    
T  26093512 gattattaagaaaatgattaattgtgttgatttcaatggtaaaattaatatcatttattaaaatatccttattaattgtagt 26093431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 27687354 - 27687301
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttact 216  Q
    |||| ||||| |||||||  |||||||| ||||||||||||| |||||||||||    
T  27687354 ttaaaaaaatgattagttgtgttgatttcaatggtaaaattaatattatttact 27687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 30754941 - 30755022
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  ||||||||||| |||||||||  ||||||||||| ||||| | |||| |||||||||    
T  30754941 gattattaaggaaatgattaattgtgttgattttaagggtaaaatttatattatttactaaaatatcattattaattatagt 30755022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 32970567 - 32970632
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatac 223  Q
    |||| |||||||||| |||| ||  |||||||| |||| |||||||| ||||||||||| ||||||    
T  32970567 gattattaagaaaatgattaattgtgttgatttcaatgataaaattaatattatttactaaaatac 32970632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 33733359 - 33733443
Alignment:
Q  243 gtagagtgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||| ||||||||||||||||| ||||||  | ||||||| |||||| ||||| | |||| |||| |||| ||||||||||||||    
T  33733359 gtagaatgaaattcaataaataagggtataataatggaaaagaataat-aaatgcttcattggtattctaaagtgacaattatttt 33733443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 39864229 - 39864148
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||||||  ||||||| |||||| ||||| |||| ||||    
T  39864229 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaatactcttattaattgtagt 39864148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 15699215 - 15699159
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| |||||||||||| ||| ||||||| ||| |||||||| |||| ||||    
T  15699215 gttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagt 15699159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 20209845 - 20209921
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||||| |||| ||  ||||||||| || ||||||||||||| ||||||| ||| | |||||| |||| ||||    
T  20209845 ttaagaaaatgattaattatgttgattttgatagtaaaattagtatcatttactaaaacatccttattaattgtagt 20209921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 28749109 - 28749033
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaatt 234  Q
    |||| ||||| |||| |||| ||  |||||||| ||||||||||||||||  ||||||| ||| |||||||| ||||    
T  28749109 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaatt 28749033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 33131641 - 33131585
Alignment:
Q  156 atgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatt 212  Q
    ||||||||||||||||| |||| || | ||||||||||||  ||||||| |||||||    
T  33131641 atgattcttaagaaaatgattatttgaattgattttaatgtcaaaattaatattatt 33131585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 34031524 - 34031608
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||| ||||| |||| |||| ||  |||||||  ||||||||||||| ||| ||||||| ||||||| |||| |||| ||||    
T  34031524 catgattattaaggaaatgattacttgtgttgattccaatggtaaaattaatatcatttactaaaataccgttattaattgtagt 34031608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 37276554 - 37276498
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| ||||||||||||||||  |||||| ||| |||||||| |||| ||||    
T  37276554 gttgattttgatggtaaaattagtatcgtttactaaaacacccttattaattgtagt 37276498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 37506152 - 37506061
Alignment:
Q  236 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    |||| |||| || ||||||||||||||||| |||||   | ||||||||| ||||||| |||||||||  ||| |||| ||||||||||||||    
T  37506152 tagttaagttgaatgaaattcaataaataagggtattataatggaaaaaaataataaa-tgttgcattgatattctaaagtgacaattatttt 37506061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 17156 - 17072
Alignment:
Q  155 catgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||| |||||||||| |||| ||  |||||||| ||||||||||||||||  ||||| |  || |||||||| |||||||||    
T  17156 catgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttattagaacacccttattaattatagt 17072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 784 - 861
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||  |||||||||||| ||  ||||||||| | ||||  ||| ||||||||||||||    
T  784 tgaaattcaataaataagggtataatagtggaaaaaat-attcaatgttgcaatggtattgtaaagtgacaattatttt 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 5405 - 5329
Alignment:
Q  249 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 327  Q
    ||||||||||||||||| ||||||| | ||||||||||||| |||||||| ||| | || |||| || |||||||||||    
T  5405 tgaaattcaataaataaaggtatat-aatggaaaaaataat-aaatgttgtattggcattctaaagtaacaattatttt 5329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 5513 - 5427
Alignment:
Q  153 tacatgattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||||||| |||||||||| ||||  |  ||||| || ||||||||||||| ||| ||||||| ||||| |||||| |||| ||||    
T  5513 tacatgattattaagaaaatgattaactgtgttgaattcaatggtaaaattaatatcatttactaaaatatccttattaattttagt 5427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1391 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 1814 - 1895
Alignment:
Q  158 gattcttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||| ||||||||||||||| ||  ||||||||| || || |||||| ||| ||||||| ||| ||| |||| |||||||||    
T  1814 gattattaagaaaataattaattgtgttgattttgatagtcaaattaatatcatttactaaaacacctttattaattatagt 1895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 7983 - 8059
Alignment:
Q  163 ttaagaaaataattagtttagttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    ||||| |||| |||| ||| ||||||||  |||||||||||| ||||||||||  ||| |||||||| |||| ||||    
T  7983 ttaaggaaatgattaattttgttgatttggatggtaaaattaatattatttaccaaaacacccttattaattgtagt 8059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 136059 - 136115
Alignment:
Q  183 gttgattttaatggtaaaattagtattatttacttaaatacccttatgaattatagt 239  Q
    |||||||| ||||||||||||| ||  ||||||| ||| |||||||| |||||||||    
T  136059 gttgatttcaatggtaaaattaatagcatttactaaaacacccttattaattatagt 136115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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