View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17116_low_7 (Length: 340)
Name: NF17116_low_7
Description: NF17116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17116_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 52518206 - 52518536
Alignment:
| Q |
1 |
tataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaataacaggaatcctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52518206 |
tataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaataacaggaatcctgca |
52518305 |
T |
|
| Q |
101 |
ataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaactagatgctgagactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52518306 |
ataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaactagatgctgagactg |
52518405 |
T |
|
| Q |
201 |
cactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacttaacaaacatggaccctttgctgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
52518406 |
cactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacataacaaacatggaccctttgcagac |
52518505 |
T |
|
| Q |
301 |
attgtaacaatttcattgccattattataga |
331 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
52518506 |
attgtaacaatttcatagccattattataga |
52518536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University