View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_high_1 (Length: 1350)

Name: NF17117_high_1
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_high_1
NF17117_high_1
[»] chr4 (15 HSPs)
chr4 (623-1336)||(12620566-12621283)
chr4 (213-368)||(41839646-41839802)
chr4 (216-367)||(44136799-44136951)
chr4 (216-346)||(5383743-5383874)
chr4 (216-301)||(38011457-38011544)
chr4 (216-346)||(44206908-44207039)
chr4 (216-303)||(44311641-44311729)
chr4 (242-320)||(44274206-44274285)
chr4 (216-363)||(21081554-21081702)
chr4 (171-299)||(18402641-18402770)
chr4 (217-316)||(3674379-3674476)
chr4 (216-301)||(20650157-20650244)
chr4 (219-271)||(41421371-41421423)
chr4 (289-368)||(25100368-25100447)
chr4 (306-368)||(1745423-1745485)
[»] chr1 (23 HSPs)
chr1 (17-362)||(18628678-18629023)
chr1 (17-368)||(18650153-18650505)
chr1 (18-324)||(11871457-11871763)
chr1 (193-366)||(33323885-33324060)
chr1 (216-363)||(26759363-26759511)
chr1 (216-350)||(26925027-26925162)
chr1 (216-336)||(23777060-23777178)
chr1 (87-368)||(16256461-16256747)
chr1 (629-919)||(26420245-26420534)
chr1 (23-161)||(26762458-26762598)
chr1 (170-317)||(14393199-14393345)
chr1 (285-367)||(50959501-50959584)
chr1 (216-368)||(19757744-19757896)
chr1 (79-161)||(26759565-26759647)
chr1 (87-161)||(27901077-27901152)
chr1 (216-298)||(15309102-15309185)
chr1 (273-368)||(8326964-8327060)
chr1 (171-302)||(42241444-42241576)
chr1 (248-303)||(16219281-16219336)
chr1 (79-153)||(26924890-26924964)
chr1 (22-55)||(8326714-8326747)
chr1 (856-897)||(25596491-25596532)
chr1 (213-301)||(30052525-30052614)
[»] chr2 (14 HSPs)
chr2 (20-385)||(9848079-9848443)
chr2 (87-368)||(35114355-35114637)
chr2 (755-916)||(21086560-21086721)
chr2 (216-303)||(5136345-5136432)
chr2 (216-350)||(38002026-38002162)
chr2 (248-320)||(22193714-22193787)
chr2 (216-303)||(18481914-18482001)
chr2 (856-924)||(34073024-34073092)
chr2 (193-301)||(4724508-4724618)
chr2 (291-369)||(463795-463873)
chr2 (17-111)||(5737581-5737675)
chr2 (306-368)||(39228886-39228948)
chr2 (207-301)||(12419325-12419421)
chr2 (207-301)||(12431385-12431481)
[»] chr6 (10 HSPs)
chr6 (1028-1317)||(7092179-7092466)
chr6 (629-919)||(15949120-15949409)
chr6 (1066-1181)||(15925412-15925527)
chr6 (216-301)||(15563665-15563751)
chr6 (248-368)||(31304017-31304139)
chr6 (211-301)||(30625577-30625668)
chr6 (810-942)||(21697127-21697259)
chr6 (220-302)||(6257385-6257468)
chr6 (310-368)||(3008845-3008903)
chr6 (214-301)||(31946347-31946436)
[»] chr8 (9 HSPs)
chr8 (17-385)||(14575099-14575450)
chr8 (27-302)||(18003694-18003970)
chr8 (217-368)||(10659105-10659257)
chr8 (213-343)||(14442516-14442646)
chr8 (273-335)||(41940062-41940125)
chr8 (306-368)||(1029736-1029797)
chr8 (306-360)||(41566177-41566231)
chr8 (218-301)||(41566347-41566432)
chr8 (858-919)||(39530609-39530670)
[»] chr3 (10 HSPs)
chr3 (17-368)||(47005550-47005901)
chr3 (17-99)||(3369317-3369399)
chr3 (216-303)||(24405197-24405284)
chr3 (836-919)||(15788369-15788452)
chr3 (216-300)||(17765996-17766080)
chr3 (216-300)||(19067316-19067400)
chr3 (23-161)||(28421409-28421549)
chr3 (289-368)||(51663937-51664016)
chr3 (216-302)||(44558474-44558562)
chr3 (641-693)||(44493676-44493728)
[»] chr7 (9 HSPs)
chr7 (213-347)||(20118166-20118301)
chr7 (43-152)||(31727413-31727523)
chr7 (213-316)||(9957245-9957351)
chr7 (261-367)||(46611470-46611574)
chr7 (61-161)||(12425316-12425417)
chr7 (171-301)||(10623511-10623642)
chr7 (87-155)||(22543104-22543173)
chr7 (218-300)||(11669163-11669247)
chr7 (216-301)||(28002808-28002893)
[»] scaffold0003 (1 HSPs)
scaffold0003 (216-368)||(353145-353298)
[»] chr5 (6 HSPs)
chr5 (801-919)||(8723036-8723154)
chr5 (95-161)||(32560644-32560710)
chr5 (217-301)||(19932329-19932414)
chr5 (1070-1123)||(27953095-27953148)
chr5 (218-269)||(2770890-2770941)
chr5 (216-266)||(12466262-12466312)
[»] scaffold0007 (1 HSPs)
scaffold0007 (856-895)||(236379-236418)
[»] scaffold0530 (1 HSPs)
scaffold0530 (629-919)||(10129-10418)
[»] scaffold0114 (1 HSPs)
scaffold0114 (771-924)||(13115-13268)


Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 623 - 1336
Target Start/End: Original strand, 12620566 - 12621283
Alignment:
Q  623 gcaatgttaaatgctgctagatctttaaaacccatacctccattgttcttatgcatcgataatttttcccatgacaagcaatgcaagcctctttttcttg 722  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12620566 gcaacgttaaatgctgctagatctttaaaacccatacctctattgttcttatgcatcgataatttttcccatgacaagcaatgcaagcctctttttcttg 12620665  T
Q  723 ttcccccatttcctcactagaacgcattcatccatcttctcaagctaatctaagagagtgttaggtaatcttaagatgctcatcacatacgaagggattg 822  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12620666 ttcccccatttcctcactagaacacattcatccatcttctcaatctaatctaagagagtgttaggtaatcttaagatggtcatcacatacgaagggattg 12620765  T
Q  823 attgcagaacaactttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaagct 922  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||    
T  12620766 actgcagaacaactttaatcattacttccctttctgcttttgacagacatttactactccagctgtttattttctaccacagcttgtctttgataaagct 12620865  T
Q  923 gagtattgccttcttacttctccctatcatcggtggtaaaccaaggtattttccggttccaagtagatcacacgctcctaagatattggtaattgattga 1022  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  12620866 gaatattgccttcttacttctccctatcatcggtggtaaaccaaggtattttccggttccaagtagatcacatgctcctaagatgttggtaattgattga 12620965  T
Q  1023 tgcaa-----cttggacattcctactatagaatatttcggacttagtaaaggctgatggcttgacctgatgcttcctcataccttgttaaaattttcttc 1117  Q
    |||||     |||||| |||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||  |||||||||||||||||    
T  12620966 tgcaacgaatcttggatattcctactatagaatatttcggacttagt-aaggttgatggcttgatccgatgcttcctcataaattgttaaaattttcttc 12621064  T
Q  1118 atcacatgagcttaactttcttctacttggaacaataggaaacattcatcagcaaacaataagtcagacaccaccgggacattacgataaatacgcacac 1217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12621065 atcacatgagcttaactttcttctacttgaaacaataggaaacattcatcagcaaacaataagtcagacaccaccggggcattacgataaatacgcacac 12621164  T
Q  1218 catgtagttccccttggttttcagcaattatgatcaatgctgataaaccttcatcacatagaatgatatatgtaaggtgacagaggatctacttgcctca 1317  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  12621165 catgtagttccccttggtttttagcaattatgatcaatgctgataagccttcatcacatagaatgatatatgtaaggtgacggaggatctactttcctca 12621264  T
Q  1318 taccatgctctagaataat 1336  Q
    |||||||| ||||||||||    
T  12621265 taccatgccctagaataat 12621283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 213 - 368
Target Start/End: Original strand, 41839646 - 41839802
Alignment:
Q  213 tgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgag-caagcaacgcgt 311  Q
    ||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||  |||| ||||   ||| ||||||||||| ||| |||||| |    
T  41839646 tgacgaatggatcgaccgccaacacggtaacaaaatccaagtgtcaatagctccctgatcaacaacaagctaaaaggctctttcgagccaaacaacgcat 41839745  T
Q  312 aagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||||||| || |||||||  ||||||||||||  |||||||||| |||||    
T  41839746 aagaactcagatcgagggatgagtccaatacgtcagtaacaagaccctttcaggtta 41839802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 216 - 367
Target Start/End: Complemental strand, 44136951 - 44136799
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcgagcaagcaacgcgtaa 313  Q
    ||||||||| |||||||| ||| |||||||| ||| |||| ||||||||||||||| |   ||||||| | | |||| ||||||||||  || |||||||    
T  44136951 cgaatggattgaccgccaacacggtaacaaaatcctagtgccaacagctccctgaatacaccagcaagcaaagaagccctttcgagcataca-cgcgtaa 44136853  T
Q  314 gaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtt 367  Q
    |||||| ||||| || |||||||  ||||||||||||  |||||||||||||||    
T  44136852 gaactcggatcgagggatgagtccaatacgtcagtaaccagaccctttcgggtt 44136799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 5383874 - 5383743
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagc-aagcaacgcgtaa 313  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||  || |||||| |||||| || ||||||||| || ||||||| ||    
T  5383874 cgaatggatcgaccgccaacacggtaacaaat-ccaagtgtcaacagctccctgatcaatagcaagcataaaatgccctttcgagcaaaacaacgcgcaa 5383776  T
Q  314 gaactcagatcgcggcatgagtctgatacgtca 346  Q
    ||||| | |||| || |||||||  ||||||||    
T  5383775 gaacttaaatcgagggatgagtccaatacgtca 5383743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 38011457 - 38011544
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa--aaacagcaagtataaaagctctttcgagca 301  Q
    ||||||||||||||| || ||| |||||||| |||||||| |||||||||||||||  || ||||||| |||||||||||||||||||    
T  38011457 cgaatggatcgaccgtcaacacggtaacaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcgagca 38011544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 216 - 346
Target Start/End: Original strand, 44206908 - 44207039
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagc-aagcaacgcgtaa 313  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||||||| ||||  ||||||||| |||||| || ||||||| | || ||||||||||    
T  44206908 cgaatggatcgaccgccaacacggtaacaaa-tccaagtgccaacagctctctgatcaacagcaagcataaaatgccctttcgaacaaaacaacgcgtaa 44207006  T
Q  314 gaactcagatcgcggcatgagtctgatacgtca 346  Q
    ||||||||||||  | |||||||  ||||||||    
T  44207007 gaactcagatcgatggatgagtccaatacgtca 44207039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 44311641 - 44311729
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa-aaacagcaagtataaaagctctttcgagcaag 303  Q
    |||||||||||||||||||||| ||| |||| |||||||| || |||||||||||| || ||||||| |||| ||||||||||||||||    
T  44311641 cgaatggatcgaccgccagcacggtatcaaaatccaagtgccatcagctccctgaacaagcagcaagcataagagctctttcgagcaag 44311729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 44274285 - 44274206
Alignment:
Q  242 acaaattccaagtgtcaacagctccctgaaaaacagcaagtat-aaaagctctttcgagcaagcaacgcgtaagaactca 320  Q
    ||||| |||||||||||||||||||||||  |||| ||||||| |||| |||||| ||||||||||||||||||||||||    
T  44274285 acaaaatccaagtgtcaacagctccctgatcaacaacaagtatgaaaaactcttttgagcaagcaacgcgtaagaactca 44274206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 21081702 - 21081554
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagcaag-caacgcgtaa 313  Q
    |||||||||||||||||| ||| ||||||||| |||||||||| | |||||||||  |||| |||| |||||| ||| |||| |||||  ||| ||||||    
T  21081702 cgaatggatcgaccgccaacacggtaacaaat-ccaagtgtcatcggctccctgatcaacaacaagcataaaaagctatttctagcaatacaatgcgtaa 21081604  T
Q  314 gaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcg 363  Q
    ||||||| |||  || ||||| |  |||||||||||| ||||||||||||    
T  21081603 gaactcatatcaagggatgagaccaatacgtcagtaactagaccctttcg 21081554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 299
Target Start/End: Original strand, 18402641 - 18402770
Alignment:
Q  171 atgaaaagtgaacatatgcatggaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctga 270  Q
    |||| ||||||||||||| |  |||||||||| || || ||| |||||||||||||||||||| |||| || |||| ||| |||| ||||| ||||||||    
T  18402641 atgacaagtgaacatatgaaaagaacaattaaggtttaatttcgacgaatggatcgaccgccaacacaatatcaaactcctagtgacaacaactccctga 18402740  T
Q  271 --aaaacagcaagtataaaagctctttcgag 299  Q
      ||| ||||||| || ||||||||||||||    
T  18402741 acaaagcagcaagcat-aaagctctttcgag 18402770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 3674379 - 3674476
Alignment:
Q  217 gaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagcaagcaacgcgtaaga 315  Q
    ||||||||||||  ||| ||| ||| || | || |||||||||||||||||||||   |||||| ||||||| |||||||||||||||||| ||||||||    
T  3674379 gaatggatcgactaccaacacggtatcagaatcaaagtgtcaacagctccctgaa---cagcaaatataaaaagctctttcgagcaagcaatgcgtaaga 3674475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 20650244 - 20650157
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctga--aaaacagcaagtataaaagctctttcgagca 301  Q
    |||| |||||||| |||| ||| |||||||| |||||||| ||||||||||||||  ||| |||||||  ||| ||||||||||||||    
T  20650244 cgaacggatcgactgccaacacggtaacaaaatccaagtgccaacagctccctgagcaaagcagcaagcgtaagagctctttcgagca 20650157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 41421371 - 41421423
Alignment:
Q  219 atggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa 271  Q
    ||||||||||||||| ||| |||||||| |||| ||| |||||||||||||||    
T  41421371 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaa 41421423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 25100447 - 25100368
Alignment:
Q  289 gctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||| ||| ||| |||||| ||||||||||| || ||||||   ||||||||| ||  ||||||||||||||||    
T  25100447 gctctttcgaacaaacaaagcgtaaaaactcagatcgagggatgagttcaatacgtcagcaaccagaccctttcgggtta 25100368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 1745485 - 1745423
Alignment:
Q  306 acgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||||||||||| | || |||||||  |||||| |||||  ||||||||||||||||    
T  1745485 acgcgtaagaactcagattgagggatgagtccaatacgttagtaaccagaccctttcgggtta 1745423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 4e-69; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 18628678 - 18629023
Alignment:
Q  17 acataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatca 116  Q
    ||||| ||||||||||||||||||||||||||||||| | | | || ||| |||||| ||| ||||||| | |||||| ||||||||| |||||||||||    
T  18628678 acataagacctgacccaggaaaacccaaacgggaatatatcgtgatgaataagcctaagtggatctactcttatctatcctaacaaaaattcactaatca 18628777  T
Q  117 tag-ctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttga 215  Q
      | | ||| |||||||||||||||||||||||||||| || ||||        |||||||||||||||| | ||| ||||| ||| |||||  || ||     
T  18628778 cgggcgcaacctagcgaacccgcgtacgggcgcgaaaccaggttacaaaaaag-aatgaaaagtgaacatctacatagaacatttagagtgtgattatgg 18628876  T
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaagcaacgcgtaaga 315  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |||| |||| |||||||||||||||| ||| ||||||||||||    
T  18628877 cgaatggatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctgaacaacaacaagcataaaagctctttcgatcaaacaacgcgtaaga 18628976  T
Q  316 actcagatcgcggcatgagtctgatacgtcagtaattagaccctttc 362  Q
    |||||||| | || |||||||  ||||||||||||  ||||||||||    
T  18628977 actcagattgagggatgagtccaatacgtcagtaaccagaccctttc 18629023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 18650153 - 18650505
Alignment:
Q  17 acataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatca 116  Q
    |||||||||||||||| ||||||| ||||||| |||||| | | | ||||||| | | ||| ||| ||| ||| |||| ||||||||| | |||||||||    
T  18650153 acataggacctgacccgggaaaactcaaacggaaatacatcgtgaaaaatcagtccaagtggatccactctaacctatcctaacaaaaatccactaatca 18650252  T
Q  117 tag-ctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttga 215  Q
     || | |||   |||||||||||||||||||||||||| |  ||||        |||||||||||||||| || |  ||||||| | ||||||    ||     
T  18650253 cagacgcaactcagcgaacccgcgtacgggcgcgaaaccaagttacaaaaaaagaatgaaaagtgaacat-tgtagagaacaataagagtgtacaaatgg 18650351  T
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagcaagcaacgcgtaag 314  Q
    ||||||||| |||||||||||   || |  | |||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||    
T  18650352 cgaatggattgaccgccagcatgatatccgaatccaagtgccaacagctccctgaacaacagcaagcataaaaagctctttcgagcaagcaatgcgtaag 18650451  T
Q  315 aactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||| |||||  || |||||||  ||||||||||||  | |||||| |||||||    
T  18650452 aactaagatcaagggatgagtccaatacgtcagtaaccatacccttccgggtta 18650505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 11871763 - 11871457
Alignment:
Q  18 cataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatca- 116  Q
    |||||||| ||||||| |||||| |||| | ||||| | | | |||||||| |||| ||| || |||| |||||||| ||||||||| |||| ||||||     
T  11871763 cataggacatgacccaagaaaactcaaatgtgaatatatcgtgataaatcaacctaagtggatatactctaatctatcctaacaaaaattcaataatcac 11871664  T
Q  117 tagctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttgac 216  Q
    | || ||| | | ||||||| ||||| |||| ||||| |  ||||        |||||||||||||||| ||||  ||| | ||  |||||| || || |    
T  11871663 tggcgcaacccaacgaacccacgtacaggcgtgaaaccatgttacaaaaaag-aatgaaaagtgaacatctgcaaagaatagttggagtgtaattatggc 11871565  T
Q  217 gaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaagcaacgcgtaagaa 316  Q
    ||||||||||||||| | ||| |||||||| |||||||| ||||| ||||||||| |||| |||| ||||||||||||||||| || |||||||||||||    
T  11871564 gaatggatcgaccgctaacacggtaacaaaatccaagtgccaacaactccctgaacaacatcaagaataaaagctctttcgagaaaacaacgcgtaagaa 11871465  T
Q  317 ctcagatc 324  Q
    ||||||||    
T  11871464 ctcagatc 11871457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 193 - 366
Target Start/End: Complemental strand, 33324060 - 33323885
Alignment:
Q  193 gaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gct 291  Q
    ||||||||| ||| || || || |||||||||||||||||| ||||||||| || |||||||| ||||||||||||||  |||| |||| |||||| |||    
T  33324060 gaacaattagagtttaattatggcgaatggatcgaccgccaacacagtaacgaaatccaagtgccaacagctccctgatgaacaacaagcataaaatgct 33323961  T
Q  292 ctttcgagc-aagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggt 366  Q
    |||| |||| || |||||||||||||||||||||| || |||||||  |||||||| |||  | ||||||||||||    
T  33323960 cttttgagcaaaacaacgcgtaagaactcagatcgagggatgagtccaatacgtcattaaccataccctttcgggt 33323885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 26759511 - 26759363
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgag-caagcaacgcgtaag 314  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||   |||  |||| ||||||||||||||||| ||| ||||  |||||    
T  26759511 cgaatggatcgaccgccaacacagtaacaaaatccaagtgccaacagctccctggtcaacgacaagcataaaagctctttcgagccaaacaacatgtaag 26759412  T
Q  315 aactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcg 363  Q
    |||| |||||| || |||||||  ||||||||||||  | |||||||||    
T  26759411 aacttagatcgagggatgagtccaatacgtcagtaaccataccctttcg 26759363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 216 - 350
Target Start/End: Original strand, 26925027 - 26925162
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgag-caagcaacgcgtaag 314  Q
    |||||||||||||||||| |||||||||||| |||||||| ||| |||||| ||   |||  |||| ||||||||||||||||| ||| |||||||||||    
T  26925027 cgaatggatcgaccgccaacacagtaacaaaatccaagtgccaatagctccttggtcaacgacaagcataaaagctctttcgagccaaacaacgcgtaag 26925126  T
Q  315 aactcagatcgcggcatgagtctgatacgtcagtaa 350  Q
    ||||||||||| || |||||||  |||| |||||||    
T  26925127 aactcagatcgagggatgagtccaatacatcagtaa 26925162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 216 - 336
Target Start/End: Complemental strand, 23777178 - 23777060
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaagcaacgcgtaaga 315  Q
    |||||||||||||||||| ||| ||| |||| |||||||| ||||||||||||||| ||||||||| || |||| |||||||| ||| ||||||||| ||    
T  23777178 cgaatggatcgaccgccaacacggta-caaaatccaagtgccaacagctccctgaacaacagcaagcat-aaagttctttcgaacaaacaacgcgtagga 23777081  T
Q  316 actcagatcgcggcatgagtc 336  Q
    |||||||||| || |||||||    
T  23777080 actcagatcgagggatgagtc 23777060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 87 - 368
Target Start/End: Complemental strand, 16256747 - 16256461
Alignment:
Q  87 taatctattctaacaaaagttcactaatcatag-ctcaatctagcgaacccgcgtacgggcgcgaaactagattac----nnnnnnntaatgaaaagtga 181  Q
    ||||||||| |||||||| |||||||||||||| | ||||| |||||||||||||||||||||||| | |||||||            ||||||||||||    
T  16256747 taatctattttaacaaaaattcactaatcataggcgcaatccagcgaacccgcgtacgggcgcgaagccagattacaaaaaaaaaaagaatgaaaagtga 16256648  T
Q  182 acatatgcatggaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaag 281  Q
    ||||  |||  ||||||||| ||| ||  | || |||||||||||||  ||| ||| || ||||| | |||||| |||||||||||||||||||| ||||    
T  16256647 acatcagcagagaacaattagagtttaaatatggcgaatggatcgacaaccaacacggtgacaaaat-caagtgccaacagctccctgaaaaacaacaag 16256549  T
Q  282 -tataaaagctctttcgag-caagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
     |||  | ||  |||||||  ||  ||| ||||||||||||||||| || |||||||  ||||||||| ||  ||||||||||||||||    
T  16256548 ctat-gatgccatttcgagtaaaataacacgtaagaactcagatcgagggatgagtccaatacgtcagcaaacagaccctttcgggtta 16256461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 629 - 919
Target Start/End: Original strand, 26420245 - 26420534
Alignment:
Q  629 ttaaatgctgctagatctttaaaacccatacctccattgttcttatgcatcgataatttttcccatgacaagcaatgcaagcctctttttcttgttcccc 728  Q
    ||||| ||||| |||||||| ||||||||||||||||  || || || |  ||||| |||||||| || || ||| |||||||| | || ||||| || |    
T  26420245 ttaaaggctgccagatctttgaaacccatacctccatgatttttgtgtactgataacttttcccaggataaccaacgcaagcctttgttgcttgtacctc 26420344  T
Q  729 catttcctcactagaacgcattcatccatcttctcaagctaatctaagagagtgttaggtaatcttaagatgctcatcacatacgaagggattgattgca 828  Q
    ||| ||| ||| |||| |||||||| ||| || |||| || ||| || | ||| || |||||||| ||||| ||||| ||||| |||||||||||||| |    
T  26420345 catgtccccaccagaatgcattcat-cattttttcaatctcatccaacaaagtatttggtaatctgaagatactcataacatatgaagggattgattgaa 26420443  T
Q  829 gaacaactttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaa 919  Q
    | |||   || | ||| |||||| |  ||||||| || | ||| || || ||||||||||||||| | | |||||| || || ||||||||    
T  26420444 ggacagacttgaccatgacttccttccctgctttagataaacacttgctgctccaactgcttattctttgccacactctatccttgataaa 26420534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 26762598 - 26762458
Alignment:
Q  23 gacctgaccca-ggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatca-tagc 120  Q
    ||||||||||| ||| |||||||||||| ||||| | | ||||| ||||| | ||| | | ||| |||||||| ||||||||| | ||||||||| | ||    
T  26762598 gacctgacccacggataacccaaacggggatacatcatgataaaacagcccaagtggaacaactctaatctatcctaacaaaaatacactaatcactggc 26762499  T
Q  121 tcaatctagcgaacccgcgtacgggcgcgaaactagattac 161  Q
     ||| | |||||||| ||||||||||||||||| |||||||    
T  26762498 gcaacccagcgaaccagcgtacgggcgcgaaaccagattac 26762458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 14393345 - 14393199
Alignment:
Q  170 aatgaaaagtgaacatatgcatggaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctg 269  Q
    |||||||||||||||| | ||  ||||| ||| ||||||  | || | ||||||| ||| || | ||| | |||||| |||||| | |||||||||||||    
T  14393345 aatgaaaagtgaacatttacaaagaacagttagagtgtaaatatggcaaatggattgactgcaaacacgggaacaaaatccaagcgccaacagctccctg 14393246  T
Q  270 aaaaacagcaagtataaaagctctttcgagcaagcaacgcgtaagaac 317  Q
    || |||| |||| |||||| |||||| |||||| ||||||||||||||    
T  14393245 aacaacaacaagcataaaa-ctctttagagcaaacaacgcgtaagaac 14393199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 50959501 - 50959584
Alignment:
Q  285 aaaagctctttcgagcaag-caacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtt 367  Q
    |||||||||| |||||||  |||||||||||||||||||||| || |||||||  ||||||||||||  |||||||||| ||||    
T  50959501 aaaagctcttccgagcaatacaacgcgtaagaactcagatcgagggatgagtccaatacgtcagtaaccagaccctttctggtt 50959584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 368
Target Start/End: Complemental strand, 19757896 - 19757744
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaa-gcaacgcgtaag 314  Q
    ||||||||| |||| ||| ||| |||||||| || ||||| ||||||||||||||  |||| |||  |||||    ||||||||||| |||||| ||||     
T  19757896 cgaatggattgaccaccaacacggtaacaaactc-aagtgccaacagctccctgatcaacatcaaacataaagtgcctttcgagcaaagcaacgtgtaaa 19757798  T
Q  315 aactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
     |||||||||| || |||||||  |||||| || || |||||||||||||||||    
T  19757797 gactcagatcgtgggatgagtccaatacgttaggaactagaccctttcgggtta 19757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 26759647 - 26759565
Alignment:
Q  79 atctactttaatctattctaacaaaagttcactaatca-tagctcaatctagcgaacccgcgtacgggcgcgaaactagattac 161  Q
    ||||||| |||||||||||||||||| |||||||||||  ||| ||| ||| ||||||||||||||| | |||||| |||||||    
T  26759647 atctactctaatctattctaacaaaa-ttcactaatcacaagcgcaacctaacgaacccgcgtacggacacgaaaccagattac 26759565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 27901077 - 27901152
Alignment:
Q  87 taatctattctaacaaaagttcactaatcata-gctcaatctagcgaacccgcgtacgggcgcgaaactagattac 161  Q
    |||||||||||||| ||| ||||||||||||| |  ||||| |||||||| |||||||||||| |||| |||||||    
T  27901077 taatctattctaacgaaaattcactaatcataggagcaatccagcgaacctgcgtacgggcgcaaaaccagattac 27901152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 298
Target Start/End: Complemental strand, 15309185 - 15309102
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcga 298  Q
    |||||||||||||||||| ||| ||| |||| |||||| | ||||| |||||||||||   ||||||||||| ||||||||||||    
T  15309185 cgaatggatcgaccgccaacacggta-caaaatccaagcgccaacaactccctgaaaacatcagcaagtatagaagctctttcga 15309102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 8326964 - 8327060
Alignment:
Q  273 aacagcaagtataaaa-gctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    ||||||| | |||||| |||||||| ||| | |||||||||| ||||||||||| || ||||||   ||||||||| ||  ||||||||||||||||    
T  8326964 aacagcaggcataaaatgctctttcaagcgaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaaccagaccctttcgggtta 8327060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 42241576 - 42241444
Alignment:
Q  171 atgaaaagtgaacatatgcatggaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctga 270  Q
    ||||||||||||||| | ||| ||||| ||| ||| ||| | || | ||  |||||||||||| ||| |||||||| |||||||| ||||| ||||||||    
T  42241576 atgaaaagtgaacatctacatagaacatttagagtttaggtatggcaaaatgatcgaccgccaacacggtaacaaaatccaagtgccaacaactccctga 42241477  T
Q  271 aaaacagcaagtat-aaaagctctttcgagcaa 302  Q
     ||| | |||  || ||||| ||||||||||||    
T  42241476 taaataacaaacataaaaagttctttcgagcaa 42241444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 16219336 - 16219281
Alignment:
Q  248 tccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaag 303  Q
    |||||||| ||||||||||||||| ||  ||||| |||| ||||||||||||||||    
T  16219336 tccaagtgccaacagctccctgaacaagcgcaagcataagagctctttcgagcaag 16219281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 26924890 - 26924964
Alignment:
Q  79 atctactttaatctattctaacaaaagttcactaatca-tagctcaatctagcgaacccgcgtacgggcgcgaaac 153  Q
    ||||||| |||||||||||||||||| |||||||||||  ||| ||||| ||| ||||||||||||| | ||||||    
T  26924890 atctactctaatctattctaacaaaa-ttcactaatcacaagcgcaatccagcaaacccgcgtacggacacgaaac 26924964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 8326714 - 8326747
Alignment:
Q  22 ggacctgacccaggaaaacccaaacgggaataca 55  Q
    |||||||||| |||||||||||||||||||||||    
T  8326714 ggacctgacctaggaaaacccaaacgggaataca 8326747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 856 - 897
Target Start/End: Original strand, 25596491 - 25596532
Alignment:
Q  856 ctgcttttgacagacatttactactccaactgcttattttct 897  Q
    ||||||||||||||||||| ||||||||||| || |||||||    
T  25596491 ctgcttttgacagacatttgctactccaactactaattttct 25596532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 30052525 - 30052614
Alignment:
Q  213 tgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagca 301  Q
    |||||||||||||||||  || ||| | |||||| | |||||| || |||||||||||  |||| |||| |||||| |||||||||||||    
T  30052525 tgacgaatggatcgaccatcaacacggcaacaaaattcaagtgccagcagctccctgatcaacatcaagcataaaacgctctttcgagca 30052614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 2e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 9848443 - 9848079
Alignment:
Q  20 taggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatcatag 119  Q
    ||||||||||||||| |||||||||| ||||||||||| | | ||| ||| ||   |  ||||||| ||||||||  |||||||||| |||| |||| ||    
T  9848443 taggacctgacccagaaaaacccaaaagggaatacaacatgacaaaacagtcttaatagatctactctaatctatcttaacaaaagtccactgatcaaag 9848344  T
Q  120 -ctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttgacga 218  Q
     | ||| | ||| ||| |||||||| ||||||||| | |||||        ||  |||||||||||| ||||| || ||| |||||||||||| ||||||    
T  9848343 acgcaacccagcaaacacgcgtacgagcgcgaaaccatattacaaaaa---aaaaaaaagtgaacatctgcatagagcaactaaagtgtagttatgacga 9848247  T
Q  219 atggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaagcaacgcgtaagaact 318  Q
    ||||||||| ||||| ||| | |||||  |||||||| ||||| ||||||||| |||| |||||||||| || |||||||||||||||||||||||||||    
T  9848246 atggatcgatcgccaacacggcaacaacatccaagtgccaacaactccctgaacaacaacaagtataaacgccctttcgagcaagcaacgcgtaagaact 9848147  T
Q  319 cagatcgcggcatgagtctgatacgtcagtaattagacc-ctttcgggttattgtaaccgaccctttc 385  Q
    ||||||| || |||||||  ||||||||||||  |||||  |||||||||||||| ||||||||||||    
T  9848146 cagatcgagggatgagtccaatacgtcagtaaccagacctttttcgggttattgtgaccgaccctttc 9848079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 87 - 368
Target Start/End: Original strand, 35114355 - 35114637
Alignment:
Q  87 taatctattctaacaaaagttcactaatcatag-ctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacat 185  Q
    |||||||||||||||||| |||||  ||||||| | |||   |||||||||||||||| ||||||||  || ||||        ||||||||||||||||    
T  35114355 taatctattctaacaaaaattcacatatcatagacacaaaacagcgaacccgcgtacgtgcgcgaaatcaggttacaaaaaaagaatgaaaagtgaacat 35114454  T
Q  186 atgcatggaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtat- 284  Q
     ||||  ||||||||| ||  ||    |   ||||||||||||||||| || ||  ||||| |||||||||||||||||||||||  |||| ||||  |     
T  35114455 ttgcaaagaacaattagagattaaggatagtgaatggatcgaccgccaaca-agatacaaaatccaagtgtcaacagctccctgatcaacaacaagcgtg 35114553  T
Q  285 aaaagctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||| |||||||||||||||||||| ||| ||||  || |||||||| |||||||| |||  ||||||||| ||||||    
T  35114554 aaaagctcttccgagcaagcaacgcgtaagagctcggatcaagggatgagtctaatacgtcaataaccagacccttttgggtta 35114637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 755 - 916
Target Start/End: Original strand, 21086560 - 21086721
Alignment:
Q  755 catcttctcaagctaatctaagagagtgttaggtaatcttaagatgctcatcacatacgaagggattgattgcagaacaactttaatcattacttccctt 854  Q
    |||||||||||  | |||||| | |||||| |||||||| ||||| ||||| ||||| || || || ||||| |||||   ||| ||||| |||||||||    
T  21086560 catcttctcaatttcatctaacaaagtgtttggtaatctgaagatactcataacataggatggaatagattgaagaaccgattttatcatgacttccctt 21086659  T
Q  855 tctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgat 916  Q
     ||||||| |||| ||||||||| |||||||| || || ||||||||||| || ||||||||    
T  21086660 cctgctttagacaaacatttactgctccaactactaatcttctaccacactctatctttgat 21086721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 5136432 - 5136345
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa-aaacagcaagtataaaagctctttcgagcaag 303  Q
    |||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||| || |||||||  | ||||||||||||||||||    
T  5136432 cgaatggatcgaccgctagcacggtaacgaat-ccaagtgccaacagctccctgaacaagcagcaagcgtgaaagctctttcgagcaag 5136345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 350
Target Start/End: Complemental strand, 38002162 - 38002026
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagcaag-caacgcgtaa 313  Q
    ||||||||||||||||||||||  ||||||| | | |||| |||| |||||||||  |||| |||  ||||||  | |||||||||||| |||| |||||    
T  38002162 cgaatggatcgaccgccagcacgataacaaaattctagtgccaacggctccctgatcaacatcaaacataaaataccctttcgagcaagacaacacgtaa 38002063  T
Q  314 gaactcagatcgcggcatgagtctgatacgtcagtaa 350  Q
    |||||||||||| || |||||||  |||||| |||||    
T  38002062 gaactcagatcgagggatgagtccaatacgttagtaa 38002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 22193714 - 22193787
Alignment:
Q  248 tccaagtgtcaacagctccctgaaaaacagcaagtataaaag-ctctttcgagcaagcaacgcgtaagaactca 320  Q
    |||||||| ||||| |||||| || |||| |||||||||||  ||||||||| |||||||||||||||||||||    
T  22193714 tccaagtgccaacaactccctaaacaacaacaagtataaaaaactctttcgaacaagcaacgcgtaagaactca 22193787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 18481914 - 18482001
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa-cagcaagtataaaagctctttcgagcaag 303  Q
    |||||||||||||||||| ||| ||||| ||| ||||||| ||||| |||||| || || |||||||  ||||||||||||||||||||    
T  18481914 cgaatggatcgaccgccaacacggtaacgaat-ccaagtgccaacaactccctaaacaagcagcaagcgtaaaagctctttcgagcaag 18482001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 856 - 924
Target Start/End: Original strand, 34073024 - 34073092
Alignment:
Q  856 ctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaagctga 924  Q
    ||||||| |||| ||||||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||    
T  34073024 ctgctttggacaaacatttactactccaactgctaattttttgccacactctgtccttgataaaactga 34073092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 4724618 - 4724508
Alignment:
Q  193 gaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctga--aaaacagcaagtataaaagc 290  Q
    |||||||||| || ||  || ||||||||||| |||||| | | |||||||||| | ||||||||||||  ||| |||  ||| ||||||| ||||||||    
T  4724618 gaacaattaaggtttaagttcgacgaatggattgaccgctaactcagtaacaaagttcaagtgtcaacaattccatgatcaaagcagcaagcataaaagc 4724519  T
Q  291 tctttcgagca 301  Q
    |||||||||||    
T  4724518 tctttcgagca 4724508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 463873 - 463795
Alignment:
Q  291 tctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggttat 369  Q
    |||||||||||| |||||||| | ||||||||||| || ||||||   ||||||||| ||| ||| |||||||||||||    
T  463873 tctttcgagcaaacaacgcgttaaaactcagatcgggggatgagttcaatacgtcagaaatcagatcctttcgggttat 463795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 5737675 - 5737581
Alignment:
Q  17 acataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcact 111  Q
    ||||||||||||||||| || | |||||||||||||||| | | ||  | |||||||| || || |||| |||||||| | ||||||| ||||||    
T  5737675 acataggacctgacccaagagagcccaaacgggaatacatcatgatggaacagcctagatggatatactctaatctatccaaacaaaaattcact 5737581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 39228948 - 39228886
Alignment:
Q  306 acgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||||||||||||| || |||||||  |||||| |||||  ||| ||||||||||||    
T  39228948 acgcgtaagaactcagatcgagggatgagtcgaatacgttagtaaccagaacctttcgggtta 39228886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 12419325 - 12419421
Alignment:
Q  207 tagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa--aaacagcaagtataaaagctctttcgagca 301  Q
    |||||| | ||||||||| ||| | || | || ||| ||| |||||||| || ||||||||||||  || ||||||| |||||||||||||||||||    
T  12419325 tagtttcggcgaatggattgactgtcaacgcaataataaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcgagca 12419421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 12431385 - 12431481
Alignment:
Q  207 tagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa--aaacagcaagtataaaagctctttcgagca 301  Q
    |||||| | ||||||||| ||| | || | || ||| ||| |||||||| || ||||||||||||  || ||||||| |||||||||||||||||||    
T  12431385 tagtttcggcgaatggattgactgtcaacgcaataataaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcgagca 12431481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 2e-40; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1028 - 1317
Target Start/End: Original strand, 7092179 - 7092466
Alignment:
Q  1028 cttggacattcctactatagaatatttcggacttagtaaaggctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcacatgag 1127  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||  ||| ||||||||||||| |||||||    |||||||||||||    
T  7092179 cttggacattcctactatagaatatttcggacataggaa-ggctgatagcttgacccaatggttcctcatacctttttaaaatccgattcatcacatgag 7092277  T
Q  1128 cttaactttcttctacttggaacaataggaaacattcatcagcaaacaataagtcagacaccaccgggacattacgataaatacgcacaccatgtagttc 1227  Q
    |||  ||||| ||| ||| ||| || | |||||   ||||| |||||||||| | |||||||||||||||| ||||| ||||||| ||||| || |||||    
T  7092278 cttggctttcctctgcttagaagaacatgaaacgaccatcaacaaacaataaatgagacaccaccgggacactacgacaaatacgtacaccttgaagttc 7092377  T
Q  1228 cccttggttttcagcaattatgatcaatgctgataaaccttcatcacatagaatgatatatgtaaggtgacagaggatctacttgcctca 1317  Q
    ||||   |||||| ||  | | ||||||| |||||| |||||| |||| | ||||| ||| ||||||||| ||||| ||| |||||||||    
T  7092378 ccctatattttcaacatatttaatcaatgttgataagccttcaacacacaaaatga-ataagtaaggtgatagagggtctccttgcctca 7092466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 629 - 919
Target Start/End: Complemental strand, 15949409 - 15949120
Alignment:
Q  629 ttaaatgctgctagatctttaaaacccatacctccattgttcttatgcatcgataatttttcccatgacaagcaatgcaagcctctttttcttgttcccc 728  Q
    ||||| ||||| |||||||| ||||||||||||||||  || || || |  ||||| |||||||| || || ||| |||||||| | || ||||| || |    
T  15949409 ttaaaggctgccagatctttgaaacccatacctccatgatttttgtgtactgataacttttcccaggataaccaacgcaagcctttgttgcttgtacctc 15949310  T
Q  729 catttcctcactagaacgcattcatccatcttctcaagctaatctaagagagtgttaggtaatcttaagatgctcatcacatacgaagggattgattgca 828  Q
    ||| ||| ||| |||| ||||||||| || || |||| || ||| || | ||| || |||||||| ||||| ||||| ||||| |||||||||||||| |    
T  15949309 catgtccccaccagaatgcattcatc-attttttcaatctcatccaacaaagtatttggtaatctgaagatactcataacatatgaagggattgattgaa 15949211  T
Q  829 gaacaactttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaa 919  Q
    | |||   || | ||| |||||| |  ||||||| || | ||| || || ||||||||||||||| ||| |||||| || || ||||||||    
T  15949210 ggacagacttgaccatgacttccttccctgctttagataaacacttgctgctccaactgcttattctctgccacactctatccttgataaa 15949120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1066 - 1181
Target Start/End: Original strand, 15925412 - 15925527
Alignment:
Q  1066 aaggctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcacatgagcttaactttcttctacttggaacaataggaaacattca 1165  Q
    |||| ||||||||||||| |||||||| ||||||||||| ||||| | |||||| |||| ||||| ||| || ||| ||||||| || |  ||||| ||     
T  15925412 aaggttgatggcttgacccgatgcttcttcataccttgtcaaaatctgcttcataacataagcttgactatcctctgcttggaagaacaaaaaacagtcg 15925511  T
Q  1166 tcagcaaacaataagt 1181  Q
    ||||||||||||||||    
T  15925512 tcagcaaacaataagt 15925527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 15563751 - 15563665
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaa-acagcaagtataaaagctctttcgagca 301  Q
    |||||||||||||| ||| ||||||| |||| | ||||||| ||||||||||| |||| |||||||  |||||||||||||||||||    
T  15563751 cgaatggatcgaccaccaacacagtatcaaaattcaagtgtgaacagctccctaaaaatacagcaaacataaaagctctttcgagca 15563665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 31304139 - 31304017
Alignment:
Q  248 tccaagtgtcaacagctccctgaaa-aacagcaagtataaaa-gctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtc 345  Q
    |||||||||||||||  |||||||  ||||||||| |||||| | |||||  ||||| ||||  |||||||||||||||| || ||||||   |||||||    
T  31304139 tccaagtgtcaacagtcccctgaatcaacagcaagcataaaatgttcttttaagcaaacaacatgtaagaactcagatcgagggatgagttcaatacgtc 31304040  T
Q  346 agtaattagaccctttcgggtta 368  Q
    |||||  ||||||||||||||||    
T  31304039 agtaaccagaccctttcgggtta 31304017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 30625577 - 30625668
Alignment:
Q  211 tttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccct-gaaaaacagcaagtataaaagctctttcgagca 301  Q
    |||| |||||||||||||||||| ||| |||||||| | |||||||||||  ||||||  ||| ||| |||  |||||||||||||||||||    
T  30625577 tttggcgaatggatcgaccgccaacacggtaacaaaattcaagtgtcaactactccctacaaatacatcaaacataaaagctctttcgagca 30625668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 810 - 942
Target Start/End: Complemental strand, 21697259 - 21697127
Alignment:
Q  810 tacgaagggattgattgcagaacaactttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctaccacaccctgt 909  Q
    |||||||| || ||||| |||||   ||| ||||| ||||||||| ||||||| ||||  |||||||||||||| || || || |||| ||| || || |    
T  21697259 tacgaaggaatagattgaagaactgatttgatcatgacttcccttcctgctttggacaagcatttactactccagctactaatcttctgccaaactctat 21697160  T
Q  910 ctttgataaagctgagtattgccttcttacttc 942  Q
    | ||||| |||||||   |||||||||||||||    
T  21697159 ccttgatgaagctgaaggttgccttcttacttc 21697127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 6257468 - 6257385
Alignment:
Q  220 tggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaag-tataaaagctctttcgagcaa 302  Q
    |||||||| | ||| ||| ||| |||| |||||||||||||||||||||||  |||| |||| |  ||||||||||||||||||    
T  6257468 tggatcgatcaccaacacggtatcaaaatccaagtgtcaacagctccctgatcaacaacaagcttaaaaagctctttcgagcaa 6257385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 3008845 - 3008903
Alignment:
Q  310 gtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    ||||||||||||||||  | |||||||| |||||| |||||  ||||||||||||||||    
T  3008845 gtaagaactcagatcgaaggatgagtctaatacgttagtaaccagaccctttcgggtta 3008903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 31946436 - 31946347
Alignment:
Q  214 gacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctg--aaaaacagcaagtataaaagctctttcgagca 301  Q
    ||||||||||| | |||||| ||| ||| |||| |||||||| |||||||||||||   || ||| |||| |||| ||||||||||||||    
T  31946436 gacgaatggattgcccgccaacacggtatcaaaatccaagtgccaacagctccctgcacaagacaacaagcataacagctctttcgagca 31946347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 7e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 14575099 - 14575450
Alignment:
Q  17 acataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatca 116  Q
    ||||||||||||||||||||||||||||| ||||||||||| | | ||| ||||||   |  ||||||| ||||||||  |||||||||||| || ||||    
T  14575099 acataggacctgacccaggaaaacccaaaagggaatacaacatgacaaaacagccttaatagatctactctaatctatcttaacaaaagttctctgatca 14575198  T
Q  117 tagctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttgac 216  Q
      ||  || | |   |||||||||||| ||||||||| |||||||        ||||||||| |||||| | ||| |||||| |||||||||||| ||||    
T  14575199 acgc--aacccaagaaacccgcgtacgagcgcgaaaccagattacaaaaaaa-aatgaaaagggaacatcttcatagaacaactaaagtgtagttatgac 14575295  T
Q  217 gaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaagcaacgcgtaagaa 316  Q
    ||||||||||||||||| ||| | |||||  |||||||| |||||               ||||||||||| || |||||||||||||||||||||| ||    
T  14575296 gaatggatcgaccgccaacacggcaacaacatccaagtgccaaca---------------gcaagtataaatgccctttcgagcaagcaacgcgtaaaaa 14575380  T
Q  317 ctcagatcgcggcatgagtctgatacgtcagtaattagacc-ctttcgggttattgtaaccgaccctttc 385  Q
     |||||||| || |||||||| ||||||||||||  |||||  ||||||| |||||| ||||||||||||    
T  14575381 atcagatcgagggatgagtctaatacgtcagtaaccagacctttttcgggctattgtgaccgaccctttc 14575450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 27 - 302
Target Start/End: Complemental strand, 18003970 - 18003694
Alignment:
Q  27 tgacccaggaa-aacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatcatag-ctcaa 124  Q
    ||||||||||| |||||||||||||||||||| | ||||||||| | ||||  ||| ||| |||||||| ||||||||| ||| ||||||| || | |||    
T  18003970 tgacccaggaataacccaaacgggaatacaacatgataaatcagtccaggtagatcaactctaatctatcctaacaaaaattccctaatcaaaggcgcaa 18003871  T
Q  125 tctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttgacgaatggat 224  Q
     | |||||||||||||||  ||||||||| |  ||||         ||||||||||||| | ||||| ||||||||| ||| ||| | |||| |||| ||    
T  18003870 cccagcgaacccgcgtacatgcgcgaaaccaagttacaaaaaat--atgaaaagtgaacgtctgcatagaacaattagagtttaggtatgacaaatgaat 18003773  T
Q  225 cgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtat-aaaagctctttcgagcaa 302  Q
    ||||||||| ||| |||||||| |||||||| ||||||||||||||  ||||  ||| || ||||||||||||||||||    
T  18003772 cgaccgccaacacggtaacaaaatccaagtgccaacagctccctgatcaacaagaagcataaaaagctctttcgagcaa 18003694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 10659105 - 10659257
Alignment:
Q  217 gaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagc-aagcaacgcgtaaga 315  Q
    ||||||||||||| ||| ||| |||||||| |||||||| ||||| ||||||||  |||| |||| ||||| | |||||||||| || ||||||||||||    
T  10659105 gaatggatcgaccaccaacacggtaacaaaatccaagtgccaacaactccctgatgaacaacaagcataaatgatctttcgagcaaaacaacgcgtaaga 10659204  T
Q  316 actcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||| || |||||||  ||||||||| ||  |||| ||||| |||||    
T  10659205 actcagatcgagggatgagtccaatacgtcagcaaccagactctttcaggtta 10659257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 14442516 - 14442646
Alignment:
Q  213 tgacgaatggatcgaccgccagcacagtaacaaattccaagtg-tcaacagctccctgaaaaacagcaagtataaaagctctttcgagcaagcaacgcgt 311  Q
    |||||||||||| |||||||| ||| |||||||| ||||||||  |||| |||||||||| | ||||||| | |  | | ||||||||| |  |||||||    
T  14442516 tgacgaatggattgaccgccaacacggtaacaaaatccaagtgcccaacggctccctgaacaccagcaagcaaagcatccctttcgagc-attaacgcgt 14442614  T
Q  312 aagaactcagatcgcggcatgagtctgatacg 343  Q
    |||||||||||||| || |||||||| |||||    
T  14442615 aagaactcagatcgagggatgagtctaatacg 14442646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 41940062 - 41940125
Alignment:
Q  273 aacagcaagtataaaa-gctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagt 335  Q
    ||||||| | |||||| |||||||||||||| |||||||||| ||||||||||| || ||||||    
T  41940062 aacagcaggcataaaatgctctttcgagcaaacaacgcgtaaaaactcagatcgagggatgagt 41940125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 1029736 - 1029797
Alignment:
Q  306 acgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||||||||||||| || |||||||  |||||| |||||  ||||||||||||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaa-cagaccctttcgggtta 1029797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 41566231 - 41566177
Alignment:
Q  306 acgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctt 360  Q
    |||||||||||||||||||| || |||||||| |||||| |||||  ||||||||    
T  41566231 acgcgtaagaactcagatcgtgggatgagtctaatacgttagtaaccagaccctt 41566177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 41566432 - 41566347
Alignment:
Q  218 aatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctg--aaaaacagcaagtataaaagctctttcgagca 301  Q
    |||||||||||||||| ||| ||| |||| || ||||| |||||||||||||   || ||| |||| |||| ||||||||||||||    
T  41566432 aatggatcgaccgccaacacggtatcaaaatctaagtggcaacagctccctgcacaagacaacaagcataacagctctttcgagca 41566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 858 - 919
Target Start/End: Complemental strand, 39530670 - 39530609
Alignment:
Q  858 gcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaa 919  Q
    ||||| |||||||| ||||||||||||||  ||||||||| |||||| || ||||| |||||    
T  39530670 gctttagacagacacttactactccaactatttattttctgccacactctatctttaataaa 39530609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 1e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 47005550 - 47005901
Alignment:
Q  17 acataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatca 116  Q
    |||||||||| |||| |||| ||||||||| |||||||| | | ||||| ||| | | ||| ||||||| |||||||| ||||| ||| |||||||||||    
T  47005550 acataggaccagacctaggataacccaaacaggaatacatcgtgataaagcagtccaagtggatctactctaatctatcctaaccaaaattcactaatca 47005649  T
Q  117 tag-ctcaatctagcgaacccgcgtacgggcgcgaaactagattacnnnnnnntaatgaaaagtgaacatatgcatggaacaattaaagtgtagttttga 215  Q
     |  | ||| |||||||||||||||||| ||||||||| |  || |         |||||||||||| || ||||  ||||||||| ||||||     |     
T  47005650 catacgcaacctagcgaacccgcgtacgagcgcgaaaccaagtt-caaaaaaaagatgaaaagtgaatat-tgcagagaacaattagagtgtaaccaggg 47005747  T
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaa-gctctttcgagcaagcaacgcgtaag 314  Q
    ||||||||||||||| || | | ||| |  | |||||||| ||||||||||||||  |||| |||| |||||| ||||||||||||||||||||||||||    
T  47005748 cgaatggatcgaccgtcaacgcggtatccgaatccaagtgccaacagctccctgagcaacaacaagcataaaaagctctttcgagcaagcaacgcgtaag 47005847  T
Q  315 aactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||| |||||| || |||||||  ||||||||||||  ||||||||| ||||||    
T  47005848 aactaagatcgagggatgagtccaatacgtcagtaaccagacccttttgggtta 47005901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 3369317 - 3369399
Alignment:
Q  17 acataggacctgacccaggaaaacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaa 99  Q
    ||||| |||||||||||||| |||||||||||||||||| | | ||||| ||| ||| ||| |||||||||||||||| ||||    
T  3369317 acataagacctgacccaggataacccaaacgggaatacagcgtgataaagcagtctaagtggatctactttaatctatcctaa 3369399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 24405284 - 24405197
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaa-aaacagcaagtataaaagctctttcgagcaag 303  Q
    |||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||| || | |||||  | ||||||||||||||||||    
T  24405284 cgaatggatcgacctccagcacggtaacaaa-tccaagtgccaacagctccctgaacaagcggcaagcgtgaaagctctttcgagcaag 24405197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 836 - 919
Target Start/End: Complemental strand, 15788452 - 15788369
Alignment:
Q  836 tttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaa 919  Q
    ||||||||| ||||||||| ||||||| || |  |||||||||||||| ||||||||||||| |||||| |  |||||||||||    
T  15788452 tttaatcataacttcccttcctgctttggataagcatttactactccagctgcttattttctgccacactcgatctttgataaa 15788369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 17765996 - 17766080
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa-cagcaagtataaaagctctttcgagc 300  Q
    |||||||||| |||||||||  |||| |||| |||||||| ||||||||||| ||| || ||||||| ||||||||||||||||||    
T  17765996 cgaatggatctaccgccagct-agtatcaaaatccaagtgccaacagctcccagaataagcagcaagcataaaagctctttcgagc 17766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 19067316 - 19067400
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa-cagcaagtataaaagctctttcgagc 300  Q
    |||||||||| |||||||||  |||| |||| |||||||| ||||||||||| ||| || ||||||| ||||||||||||||||||    
T  19067316 cgaatggatctaccgccagct-agtatcaaaatccaagtgccaacagctcccagaataagcagcaagcataaaagctctttcgagc 19067400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 28421549 - 28421409
Alignment:
Q  23 gacctgacccaggaa-aacccaaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatcatagct 121  Q
    ||||||||| ||||| ||| ||| ||| |||||||| | ||||| ||| | | ||| ||||||| ||||||||  |||||||| ||||||||||| |  |    
T  28421549 gacctgacctaggaataactcaagcggaaatacaacgtgataaaacagtccaagtggatctactctaatctatcataacaaaaattcactaatcacatgt 28421450  T
Q  122 -caatctagcgaacccgcgtacgggcgcgaaactagattac 161  Q
     ||||| | ||||| |||||||||||||||||| |||||||    
T  28421449 gcaatccaacgaactcgcgtacgggcgcgaaaccagattac 28421409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 51663937 - 51664016
Alignment:
Q  289 gctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||||||| |||||||||| |||| |||||| |  |||||| | ||| ||||||||  ||||||||||||||||    
T  51663937 gctctttcgagcaaacaacgcgtaaaaacttagatcgagcgatgagtttaatatgtcagtaaccagaccctttcgggtta 51664016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 44558474 - 44558562
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcgagcaa 302  Q
    |||||||||| |||| || ||||||| |||| |||||||| || ||||||| |||| |   ||||||| ||||||||||||||||||||    
T  44558474 cgaatggatcaaccggcaacacagtatcaaaatccaagtgccagcagctccgtgaacacagcagcaagcataaaagctctttcgagcaa 44558562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 641 - 693
Target Start/End: Complemental strand, 44493728 - 44493676
Alignment:
Q  641 agatctttaaaacccatacctccat-tgttcttatgcatcgataatttttccca 693  Q
    ||||||||||||||||| || |||| |||| |||||||||||||||||||||||    
T  44493728 agatctttaaaacccatgccaccatgtgtt-ttatgcatcgataatttttccca 44493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 4e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 20118166 - 20118301
Alignment:
Q  213 tgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaacagcaagtataaaagctctttcgagc-aagcaacgcgt 311  Q
    |||||||| ||||||||||||  || |||||||| |||||||| ||||| ||||||||  ||||||||| ||||| |||||||||||| || | || |||    
T  20118166 tgacgaatagatcgaccgccaatacggtaacaaaatccaagtgccaacaactccctgatgaacagcaagcataaatgctctttcgagcaaacctacacgt 20118265  T
Q  312 aagaactcagatcgcggcatgagtctgatacgtcag 347  Q
    ||||||||| |||| || |||||||  |||||||||    
T  20118266 aagaactcatatcgagggatgagtccaatacgtcag 20118301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 31727413 - 31727523
Alignment:
Q  43 aaacgggaatacaactttataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatcatag-ctcaatctagcgaacccgcgta 141  Q
    |||| |||||||||||| |||||||| ||||  ||  |||||| |||||||| ||||||||||||||||||||| || | |||   ||||||||||||||    
T  31727413 aaacaggaatacaacttgataaatcaacctaaatgggtctactctaatctatcctaacaaaagttcactaatcacagacgcaactcagcgaacccgcgta 31727512  T
Q  142 cgggcgcgaaa 152  Q
    |||||||||||    
T  31727513 cgggcgcgaaa 31727523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 9957351 - 9957245
Alignment:
Q  213 tgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctga-aaaacagcaagtataaaa-gctctttcgagca-agcaacgc 309  Q
    ||||||||||||||||| ||| ||| |||||||| |||||||||||| ||||||||||  || ||||||| | |||| ||||||||||||| | ||||||    
T  9957351 tgacgaatggatcgaccaccaacacggtaacaaaatccaagtgtcaatagctccctgatcaatcagcaagcacaaaatgctctttcgagcataacaacgc 9957252  T
Q  310 gtaagaa 316  Q
    |||||||    
T  9957251 gtaagaa 9957245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 46611470 - 46611574
Alignment:
Q  261 agctccctgaaaaacagcaagtataaaa-gctctttcgagcaagcaacgcgtaagaactcagatcgcggcatgagtctgatacgtcagtaattagaccct 359  Q
    ||||||||||| | | ||||| |||| | |||||||||||||| |||||||||||||||||||||| || |||||||  |||||||   ||| |||||||    
T  46611470 agctccctgaacagcggcaagcataagatgctctttcgagcaaacaacgcgtaagaactcagatcgagggatgagtccaatacgtc---aatcagaccct 46611566  T
Q  360 ttcgggtt 367  Q
    ||||||||    
T  46611567 ttcgggtt 46611574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 12425316 - 12425417
Alignment:
Q  61 ataaatcagcctaggtgtatctactttaatctattctaacaaaagttcactaatcatag-ctcaatctagcgaacccgcgtacgggcgcgaaactagatt 159  Q
    |||||||| || | ||| ||| ||| |||| ||| ||||||||| |||||||||||||| | ||| | ||||||||||||||||||| |||||| |||||    
T  12425316 ataaatcaacccaagtgcatcaactctaatatatcctaacaaaaattcactaatcataggcgcaaccaagcgaacccgcgtacgggctcgaaaccagatt 12425415  T
Q  160 ac 161  Q
    ||    
T  12425416 ac 12425417  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 10623642 - 10623511
Alignment:
Q  171 atgaaaagtgaacatatgcatggaacaattaaagtgtagttttgacgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctga 270  Q
    ||||||| |||||||||| |  |||||||||| || || ||||| ||||||||||||| |||| ||||||  |||| | ||| || ||||| ||||||||    
T  10623642 atgaaaaatgaacatatgtaaagaacaattaaggtttatttttggcgaatggatcgactgccaacacagtgtcaaaatacaattgccaacaactccctga 10623543  T
Q  271 --aaaacagcaagtataaaagctctttcgagca 301  Q
      ||| ||||||| ||  |||||||||||||||    
T  10623542 acaaagcagcaagcat-gaagctctttcgagca 10623511  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 22543173 - 22543104
Alignment:
Q  87 taatctattctaacaaaagttcactaatcata-gctcaatctagcgaacccgcgtacgggcgcgaaacta 155  Q
    ||||||||||||||| || ||||||||||| | || ||| ||||||||||||||||| || |||||||||    
T  22543173 taatctattctaacacaaattcactaatcacatgcacaacctagcgaacccgcgtactggtgcgaaacta 22543104  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 11669163 - 11669247
Alignment:
Q  218 aatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcgagc 300  Q
    |||||||| |||| || |||| || |||| || ||||||||||| |||||| || ||  ||||||| ||||||||||||||||||    
T  11669163 aatggatcaaccgtcatcacaatatcaaaatctaagtgtcaacaactccctaaataaatcagcaagcataaaagctctttcgagc 11669247  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 28002893 - 28002808
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcgagca 301  Q
    ||||||||| |||||||| ||| ||| |||| || ||||| |||  |||||||||| ||  ||||||| |||||||||||||||||||    
T  28002893 cgaatggattgaccgccaacacggtatcaaaatctaagtgccaa--gctccctgaacaaagcagcaagcataaaagctctttcgagca 28002808  T

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Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 368
Target Start/End: Original strand, 353145 - 353298
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcgagcaagcaacgcgtaa 313  Q
    ||||||||| |||||| | ||  |||||||| |||||||| |||| |||| ||||| |   ||||||| ||| |||||||||||||||  || |||||||    
T  353145 cgaatggattgaccgctaacatggtaacaaaatccaagtgccaaccgctctctgaatacaccagcaagcatacaagctctttcgagcataca-cgcgtaa 353243  T
Q  314 gaactcagatcgcggcatgagtctgatacgtcagtaattagaccctttcgggtta 368  Q
    |||||||||||| || |||||||  ||| ||||||||  ||||||||||| ||||    
T  353244 gaactcagatcgagggatgagtccaatatgtcagtaaccagaccctttcgagtta 353298  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 801 - 919
Target Start/End: Complemental strand, 8723154 - 8723036
Alignment:
Q  801 ctcatcacatacgaagggattgattgcagaacaactttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctacc 900  Q
    ||||| |||||||||||||| | ||| || |||  ||||||||| |||| |||| ||||||| || |  |||||||||||||| ||||||||||||| ||    
T  8723154 ctcataacatacgaagggatagcttggaggacagatttaatcataactttccttcctgctttggataagcatttactactccagctgcttattttctgcc 8723055  T
Q  901 acaccctgtctttgataaa 919  Q
    |||| |  |||||||||||    
T  8723054 acactcgatctttgataaa 8723036  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 32560710 - 32560644
Alignment:
Q  95 tctaacaaaagttcactaatcatagctcaatctagcgaacccgcgtacgggcgcgaaactagattac 161  Q
    |||||||||| ||||| ||||| ||| ||||| |||||||||||||||||||||||||| |||||||    
T  32560710 tctaacaaaaattcacaaatcacagcgcaatccagcgaacccgcgtacgggcgcgaaaccagattac 32560644  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 19932329 - 19932414
Alignment:
Q  217 gaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctgaaaaa--cagcaagtataaaagctctttcgagca 301  Q
    ||||||||||||||||| ||| |||  |||| ||||||| ||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  19932329 gaatggatcgaccgccaacacggtatgaaat-ccaagtgccaacagctccctgaacaatgcagcaagcataaaagctctttcgagca 19932414  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1070 - 1123
Target Start/End: Original strand, 27953095 - 27953148
Alignment:
Q  1070 ctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcaca 1123  Q
    ||||||||||||||||||||||||||||||  ||||||||| | ||||||||||    
T  27953095 ctgatggcttgacctgatgcttcctcatactgtgttaaaatctgcttcatcaca 27953148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 2770890 - 2770941
Alignment:
Q  218 aatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctccctg 269  Q
    ||||||| |||||||| ||| ||| |||| ||||||||||||||||||||||    
T  2770890 aatggattgaccgccaacacggtatcaaaatccaagtgtcaacagctccctg 2770941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 12466262 - 12466312
Alignment:
Q  216 cgaatggatcgaccgccagcacagtaacaaattccaagtgtcaacagctcc 266  Q
    |||||||||||||| ||| |||||||||||| |||||||| | ||||||||    
T  12466262 cgaatggatcgacctccaacacagtaacaaaatccaagtgccgacagctcc 12466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 856 - 895
Target Start/End: Original strand, 236379 - 236418
Alignment:
Q  856 ctgcttttgacagacatttactactccaactgcttatttt 895  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  236379 ctgctttggacagacatttactactccaactgctaatttt 236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 629 - 919
Target Start/End: Complemental strand, 10418 - 10129
Alignment:
Q  629 ttaaatgctgctagatctttaaaacccatacctccattgttcttatgcatcgataatttttcccatgacaagcaatgcaagcctctttttcttgttcccc 728  Q
    ||||| ||||| |||||||| ||||||||||||| ||  || || || |  ||||| |||||||| || || |||||||||||| | || ||||| || |    
T  10418 ttaaaggctgccagatctttgaaacccatacctctatgatttttgtgtactgataacttttcccaagataaccaatgcaagcctttgttacttgtacctc 10319  T
Q  729 catttcctcactagaacgcattcatccatcttctcaagctaatctaagagagtgttaggtaatcttaagatgctcatcacatacgaagggattgattgca 828  Q
    ||| ||| ||| |||| |||||||| ||| || |||| ||  || || | ||| || || ||||| ||||  ||||| ||||| |||||||||||||| |    
T  10318 catgtccccaccagaatgcattcat-cattttttcaatctcgtccaacaaagtatttggcaatctgaagacactcataacatatgaagggattgattgaa 10220  T
Q  829 gaacaactttaatcattacttccctttctgcttttgacagacatttactactccaactgcttattttctaccacaccctgtctttgataaa 919  Q
    | |||   || ||||| |||| |||  ||||||| || | ||| ||  | ||||||||||||||| | | |||||| || || ||||||||    
T  10219 ggacagacttgatcatgactttcctccctgctttagataaacacttgatgctccaactgcttattctttgccacactctatccttgataaa 10129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 771 - 924
Target Start/End: Original strand, 13115 - 13268
Alignment:
Q  771 tctaagagagtgttaggtaatcttaagatgctcatcacatacgaagggattgattgcagaacaactttaatcattacttccctttctgcttttgacagac 870  Q
    ||||| ||| |||| |||||||| ||||||||||| ||||| || || || | ||| ||||||  ||| ||||| || |||||  | ||||| |||| ||    
T  13115 tctaatagaatgtttggtaatctaaagatgctcatgacataagatggaatagcttgaagaacagatttgatcataacctccctcccagctttagacaaac 13214  T
Q  871 atttactactccaactgcttattttctaccacaccctgtctttgataaagctga 924  Q
    |||| || |||||||| || ||| | | |||||| || || |||||||||||||    
T  13215 atttgctgctccaactactaattctttgccacactctatccttgataaagctga 13268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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